Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G1302 Erigeron canadensis HOM05D005889 ORTHO05D007495 6.8e-91 337.4 185 100.0
Lsat_1_v5_gn_2_92760 Lactuca sativa HOM05D005889 ORTHO05D007495 5.0e-49 198.4 199 58.8
HanXRQChr12g0385561 Helianthus annuus HOM05D005889 ORTHO05D007495 8.5e-49 197.6 200 65.5
HanXRQChr14g0448791 Helianthus annuus HOM05D005889 ORTHO05D007495 1.4e-43 180.3 189 61.9
DCAR_011198 Daucus carota HOM05D005889 ORTHO05D007495 2.4e-35 152.9 125 71.2
Actinidia06039 Actinidia chinensis HOM05D005889 ORTHO05D007495 3.1e-35 152.5 158 57.6
Manes.17G118700 Manihot esculenta HOM05D005889 ORTHO05D007495 3.4e-34 149.1 199 53.3
Rhsim10G0026400 Rhododendron simsii HOM05D005889 ORTHO05D007495 3.4e-34 149.1 186 52.2
Nn4g22882 Nelumbo nucifera HOM05D005889 ORTHO05D007495 5.9e-34 148.3 126 62.7
QL02p077702 Quercus lobata HOM05D005889 ORTHO05D007495 5.9e-34 148.3 135 63.0
Rhsim10G0026900 Rhododendron simsii HOM05D005889 ORTHO05D007495 5.9e-34 148.3 120 68.3
SalBow1G5017 Salvia bowleyana HOM05D005889 ORTHO05D007495 5.9e-34 148.3 187 53.5
Aqoxy3G03079 Aquilegia oxysepala HOM05D005889 ORTHO05D007495 1.0e-33 147.5 163 58.3
MBI14_g19739_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 1.7e-33 146.7 150 59.3
TAR371G1159 Trochodendron aralioides HOM05D005889 ORTHO05D007495 2.9e-33 146.0 132 64.4
CSS0022009 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 3.8e-33 145.6 114 71.1
Cc07_g02540 Coffea canephora HOM05D005889 ORTHO05D007495 5.0e-33 145.2 196 49.5
PSO063G7534 Papaver somniferum HOM05D005889 ORTHO05D007495 5.0e-33 145.2 141 58.9
Hma1.2p1_0697F.1_g204970 Hydrangea macrophylla HOM05D005889 ORTHO05D007495 6.5e-33 144.8 201 49.3
Nitab4.5_0001952g0130 Nicotiana tabacum HOM05D005889 ORTHO05D007495 6.5e-33 144.8 145 58.6
PSO832G3377 Papaver somniferum HOM05D005889 ORTHO05D007495 8.5e-33 144.4 119 66.4
PGSC0003DMG400000508 Solanum tuberosum HOM05D005889 ORTHO05D007495 8.5e-33 144.4 181 49.2
Manes.15G180360 Manihot esculenta HOM05D005889 ORTHO05D007495 1.1e-32 144.1 164 54.3
FAN09G4317 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.5e-32 142.9 155 55.5
Sopen02g031900 Solanum pennellii HOM05D005889 ORTHO05D007495 2.5e-32 142.9 181 51.4
Gorai.001G259800 Gossypium raimondii HOM05D005889 ORTHO05D007495 4.2e-32 142.1 186 54.3
Solyc02g087150.3 Solanum lycopersicum HOM05D005889 ORTHO05D007495 4.2e-32 142.1 181 49.7
Potri.001G350500 Populus trichocarpa HOM05D005889 ORTHO05D007495 5.5e-32 141.7 130 62.3
Gohir.D07G225400 Gossypium hirsutum HOM05D005889 ORTHO05D007495 7.2e-32 141.4 186 53.8
A03p06840 Brassica napus HOM05D005889 ORTHO05D007495 9.4e-32 141.0 182 50.5
Glyma.19G012900 Glycine max HOM05D005889 ORTHO05D007495 9.4e-32 141.0 125 60.0
Phvul.004G019800 Phaseolus vulgaris HOM05D005889 ORTHO05D007495 9.4e-32 141.0 125 62.4
Sabra16G0230000 Salix brachista HOM05D005889 ORTHO05D007495 1.6e-31 140.2 114 70.2
Ciclev10012884m.g Citrus clementina HOM05D005889 ORTHO05D007495 2.1e-31 139.8 188 50.0
MELO3C009927.2 Cucumis melo HOM05D005889 ORTHO05D007495 2.1e-31 139.8 139 57.6
FvH4_6g50270 Fragaria vesca HOM05D005889 ORTHO05D007495 2.1e-31 139.8 183 48.6
FAN14G2248 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.1e-31 139.8 183 48.6
Prupe.3G279900 Prunus persica HOM05D005889 ORTHO05D007495 2.1e-31 139.8 110 68.2
FAN05G0142 Fragaria x ananassa HOM05D005889 ORTHO05D007495 2.7e-31 139.4 185 49.2
Glyma.13G070100 Glycine max HOM05D005889 ORTHO05D007495 2.7e-31 139.4 113 64.6
RcHm_v2.0_Chr2g0170581 Rosa chinensis HOM05D005889 ORTHO05D007495 2.7e-31 139.4 111 67.6
CARHR198430 Cardamine hirsuta HOM05D005889 ORTHO05D007495 3.6e-31 139.0 184 47.3
CsaV3_3G042070 Cucumis sativus L. HOM05D005889 ORTHO05D007495 3.6e-31 139.0 139 56.8
BolC3t13283H Brassica oleracea HOM05D005889 ORTHO05D007495 4.7e-31 138.7 184 47.8
Cfa007463 Carpinus fangiana HOM05D001690 ORTHO05D002627 4.7e-31 138.7 92 79.3
Migut.K01361 Erythranthe guttata HOM05D005889 ORTHO05D007495 4.7e-31 138.7 148 56.8
Thhalv10014795m.g Eutrema salsugineum HOM05D005889 ORTHO05D007495 6.1e-31 138.3 182 48.4
THA.LOC104821069 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 6.1e-31 138.3 120 60.8
AT5G14910 Arabidopsis thaliana HOM05D005889 ORTHO05D007495 7.9e-31 137.9 182 47.3
Carub.0006s1306 Capsella rubella HOM05D005889 ORTHO05D007495 7.9e-31 137.9 182 47.8
MD17G1039100 Malus domestica HOM05D005889 ORTHO05D007495 1.0e-30 137.5 186 50.5
Peaxi162Scf00129g00825 Petunia axillaris HOM05D005889 ORTHO05D007495 1.0e-30 137.5 142 59.9
MSTRG.15501 Avicennia marina HOM05D005889 ORTHO05D007495 1.4e-30 137.1 92 77.2
C03p07840 Brassica napus HOM05D005889 ORTHO05D007495 1.4e-30 137.1 182 48.4
BraA03t10009Z Brassica rapa HOM05D005889 ORTHO05D007495 1.4e-30 137.1 92 75.0
FAN02G1209 Fragaria x ananassa HOM05D005889 ORTHO05D007495 1.4e-30 137.1 185 48.6
Lj7C409T13 Lonicera japonica HOM05D005889 ORTHO05D007495 1.4e-30 137.1 129 60.5
TWI56G0856 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.4e-30 137.1 188 49.5
BcaB01g05094 Brassica carinata HOM05D005889 ORTHO05D007495 1.8e-30 136.7 182 47.8
A02p02770 Brassica napus HOM05D005889 ORTHO05D007495 1.8e-30 136.7 101 69.3
CiPaw.03G035200 Carya illinoinensis HOM05D005889 ORTHO05D007495 1.8e-30 136.7 92 79.3
PGR083G2278 Punica granatum HOM05D005889 ORTHO05D007495 1.8e-30 136.7 118 64.4
BraA02t05248Z Brassica rapa HOM05D005889 ORTHO05D007495 2.3e-30 136.3 92 73.9
Sed0001958 Sechium edule HOM05D005889 ORTHO05D007495 3.9e-30 135.6 173 46.8
Oeu047335.1 Olea europaea HOM05D005889 ORTHO05D007495 5.2e-30 135.2 128 60.9
Sc20g0002790 Simmondsia chinensis HOM05D005889 ORTHO05D007495 5.2e-30 135.2 128 60.9
CDE01G0491 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 6.7e-30 134.8 108 69.4
Hund20036 Selenicereus undatus HOM05D005889 ORTHO05D007495 6.7e-30 134.8 130 59.2
Ah.16g106950 Amaranthus hybridus HOM05D005889 ORTHO05D007495 8.8e-30 134.4 123 61.8
BcaNung03088 Brassica carinata HOM05D005889 ORTHO05D007495 8.8e-30 134.4 182 49.5
CAN.G206.53 Capsicum annuum HOM05D005889 ORTHO05D007495 8.8e-30 134.4 149 55.0
BcaNung05888 Brassica carinata HOM05D005889 ORTHO05D007495 1.1e-29 134.0 91 73.6
C02p07380 Brassica napus HOM05D005889 ORTHO05D007495 1.1e-29 134.0 91 73.6
BolC2t06669H Brassica oleracea HOM05D005889 ORTHO05D007495 1.1e-29 134.0 91 73.6
Sed0023571 Sechium edule HOM05D005889 ORTHO05D007495 1.1e-29 134.0 92 73.9
VMungo0464G2061 Vigna mungo HOM05D001690 ORTHO05D002627 1.1e-29 134.0 113 62.8
Eucgr.J02175 Eucalyptus grandis HOM05D005889 ORTHO05D007495 1.5e-29 133.7 92 75.0
THA.LOC104822380 Tarenaya hassleriana HOM05D005889 ORTHO05D007495 2.6e-29 132.9 91 74.7
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 2.6e-29 132.9 144 54.9
AUR62032095 Chenopodium quinoa HOM05D005889 ORTHO05D007495 3.3e-29 132.5 159 49.1
MBI14_g42400_MAGBIO Magnolia biondii HOM05D005889 ORTHO05D007495 3.3e-29 132.5 181 50.8
arahy.Tifrunner.gnm1.ann1.LQS8H1 Arachis hypogaea HOM05D005889 ORTHO05D007495 4.4e-29 132.1 91 74.7
arahy.Tifrunner.gnm1.ann1.XH0R3V Arachis hypogaea HOM05D005889 ORTHO05D007495 4.4e-29 132.1 91 74.7
CANSAT64G0610 Cannabis sativa HOM05D005889 ORTHO05D007495 4.4e-29 132.1 145 57.9
SGA_v2.0_scaffold205G41723 Striga asiatica HOM05D005889 ORTHO05D007495 7.4e-29 131.3 127 60.6
Atru.chr8.2424 Acer truncatum HOM05D005889 ORTHO05D007495 1.3e-28 130.6 200 47.0
CDE02G1560 Ceratophyllum demersum HOM05D005889 ORTHO05D007495 1.7e-28 130.2 108 67.6
TWI12G0403 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 1.7e-28 130.2 133 54.9
unitig_21.g20501 Utricularia gibba HOM05D005889 ORTHO05D007495 1.7e-28 130.2 118 61.9
Thecc.04G004200 Theobroma cacao HOM05D005889 ORTHO05D007495 2.2e-28 129.8 203 46.3
CANSAT64G2621 Cannabis sativa HOM05D005889 ORTHO05D007495 3.7e-28 129.0 93 72.0
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 8.2e-28 127.9 92 70.7
Duzib147G1282 Durio zibethinus HOM05D005889 ORTHO05D007495 1.1e-27 127.5 92 71.7
Medtr6g007887 Medicago truncatula HOM05D005889 ORTHO05D007495 1.1e-27 127.5 93 67.7
CSS0028338 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 1.4e-27 127.1 166 50.6
Sp6g29140 Schrenkiella parvula HOM05D005889 ORTHO05D007495 1.8e-27 126.7 86 73.3
CSS0046645 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.4e-27 126.3 166 50.0
Lj2g0018244 Lotus japonicus HOM05D005889 ORTHO05D007495 2.4e-27 126.3 115 59.1
vmacro05795 Vaccinium macrocarpon HOM05D005889 ORTHO05D007495 1.2e-26 124.0 217 44.2
Ca_04220_v3 Cicer arietinum L. HOM05D005889 ORTHO05D007495 2.0e-26 123.2 90 65.6
ClCG10G014500 Citrullus lanatus HOM05D005889 ORTHO05D007495 3.5e-26 122.5 142 56.3
Psat1g080040 Pisum sativum HOM05D005889 ORTHO05D007495 4.5e-26 122.1 92 64.1
Aa31LG11G14590 Aethionema arabicum HOM05D005889 ORTHO05D007495 1.7e-25 120.2 133 53.4
GSVIVG01032527001 Vitis vinifera HOM05D005889 ORTHO05D007495 5.0e-25 118.6 80 78.8
Nitab4.5_0005206g0020 Nicotiana tabacum HOM05D005889 ORTHO05D007495 1.1e-24 117.5 180 43.9
EL10Ac2g03378 Beta vulgaris HOM05D005889 ORTHO05D007495 1.0e-22 110.9 77 71.4
Os05g0337400 Oryza sativa ssp. japonica HOM05D005889 ORTHO05D007495 6.7e-22 108.2 94 62.8
Zm00001eb286710 Zea mays HOM05D005889 ORTHO05D007495 2.0e-21 106.7 91 60.4
BcaB01g05020 Brassica carinata HOM05D005889 ORTHO05D007495 4.4e-21 105.5 77 68.8
Peaxi162Scf00700g00623 Petunia axillaris HOM05D005889 ORTHO05D007495 6.3e-20 101.7 74 68.9
Pp3c10_16560 Physcomitrium patens HOM05D005889 ORTHO05D007495 2.4e-19 99.8 87 54.0
Lalb_Chr21g0319321 Lupinus albus HOM05D000340 ORTHO05D000821 4.1e-19 99.0 77 62.3
ATR0787G083 Amborella trichopoda HOM05D005889 ORTHO05D007495 5.3e-19 98.6 72 70.8
Pp3c2_14600 Physcomitrium patens HOM05D005889 ORTHO05D007495 5.3e-19 98.6 87 54.0
Pp3c1_25290 Physcomitrium patens HOM05D005889 ORTHO05D007495 1.0e-17 94.4 86 54.7
Mapoly0034s0091 Marchantia polymorpha HOM05D005889 ORTHO05D007495 3.8e-17 92.4 105 47.6
Rhsim10G0027100 Rhododendron simsii HOM05D005889 ORTHO05D007495 1.2e-15 87.4 57 77.2
Gohir.A07G218300 Gossypium hirsutum HOM05D005889 ORTHO05D007495 1.8e-14 83.6 149 48.3
AL6G25690 Arabidopsis lyrata HOM05D005889 ORTHO05D007495 3.0e-14 82.8 166 35.5
SMO119G0369 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 2.0e-13 80.1 82 45.1
Dinv35030 Davidia involucrata HOM05D005889 ORTHO05D007495 1.7e-12 77.0 133 43.6
CSS0042844 Camellia sinensis var. sinensis HOM05D005889 ORTHO05D007495 2.2e-12 76.6 59 74.6
RcHm_v2.0_Chr2g0170541 Rosa chinensis HOM05D005889 ORTHO05D007495 8.3e-12 74.7 57 70.2
SEGI_28638 Sequoiadendron giganteum HOM05D005889 ORTHO05D007495 1.8e-11 73.6 86 50.0
HPP92_014818 Vanilla planifolia HOM05D005889 ORTHO05D007495 4.1e-11 72.4 123 42.3
Nn3g16976 Nelumbo nucifera HOM05D005889 ORTHO05D007495 1.7e-09 67.0 133 39.1
SMO163G0046 Selaginella moellendorffii HOM05D003366 ORTHO05D004045 1.1e-08 64.3 82 39.0
Gohir.A13G059250 Gossypium hirsutum HOM05D001962 ORTHO05D019237 7.2e-08 61.6 183 38.3
Gohir.A08G189616 Gossypium hirsutum HOM05D001962 ORTHO05D019237 1.6e-07 60.5 183 38.3
Gorai.N013200 Gossypium raimondii HOM05D001962 ORTHO05D019237 1.6e-07 60.5 177 40.7
Gohir.D12G031850 Gossypium hirsutum HOM05D001962 ORTHO05D019237 8.0e-07 58.2 122 43.4
TPR.G132 Trifolium pratense HOM05D005889 ORTHO05D007495 8.0e-07 58.2 40 70.0
Gorai.009G308300 Gossypium raimondii HOM05D001962 ORTHO05D019237 1.4e-06 57.4 173 37.6
TAR629G0556 Trochodendron aralioides HOM05D001690 ORTHO05D009096 1.8e-06 57.0 39 69.2
AagrBONN_evm.TU.Sc2ySwM_368.656 Anthoceros agrestis HOM05D005889 ORTHO05D007495 4.0e-06 55.8 70 38.6
Gohir.D05G332600 Gossypium hirsutum HOM05D001962 ORTHO05D019237 4.0e-06 55.8 165 37.6
Cpa.g.sc286.7 Carica papaya HOM05D005889 ORTHO05D007495 8.8e-06 54.7 134 36.6


User provided reference genes

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