Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 0.0e+00 1199.5 624 100.0
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 2.9e-242 842.0 630 71.0
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 2.4e-236 822.4 646 67.3
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 1.0e-223 780.4 649 65.5
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 2.1e-216 756.1 624 66.0
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 2.2e-213 746.1 649 60.2
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 2.2e-202 709.5 618 60.2
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 3.8e-202 708.8 649 59.5
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 2.5e-201 706.1 618 60.2
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 7.9e-200 701.0 620 60.6
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 3.9e-199 698.7 615 61.0
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 2.6e-198 696.0 619 59.6
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.3e-197 693.7 631 59.9
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 2.8e-197 692.6 621 58.6
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 1.5e-195 686.8 618 58.3
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 1.7e-194 683.3 611 59.7
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 2.9e-194 682.6 637 57.9
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 8.5e-194 681.0 587 63.7
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 2.5e-193 679.5 617 59.3
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 3.6e-192 675.6 645 56.3
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 8.0e-192 674.5 613 58.1
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 8.0e-192 674.5 619 58.2
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.4e-191 673.7 621 57.5
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 1.8e-191 673.3 651 56.1
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 6.7e-191 671.4 614 58.3
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 6.7e-191 671.4 621 58.3
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 1.1e-190 670.6 651 55.1
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 1.1e-190 670.6 616 58.3
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 5.7e-190 668.3 649 57.2
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 1.3e-189 667.2 620 56.9
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 1.3e-189 667.2 624 58.2
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 1.7e-189 666.8 616 58.8
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 2.8e-189 666.0 622 57.1
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 3.7e-189 665.6 619 56.7
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 1.4e-188 663.7 622 57.2
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 4.1e-188 662.1 613 58.4
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 7.0e-188 661.4 612 56.2
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.6e-187 660.2 664 54.5
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 3.5e-187 659.1 604 56.1
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 4.5e-187 658.7 654 55.7
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.0e-186 657.5 615 57.6
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 2.2e-186 656.4 618 55.5
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 3.8e-186 655.6 611 58.4
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 6.5e-186 654.8 616 58.3
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 8.5e-186 654.4 614 56.7
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 1.1e-185 654.1 620 56.8
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 7.2e-185 651.4 649 54.1
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 9.4e-185 651.0 622 56.1
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 9.4e-185 651.0 618 56.8
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 9.4e-185 651.0 617 56.4
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 1.2e-184 650.6 618 57.0
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.2e-184 650.6 666 53.0
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 2.1e-184 649.8 617 56.4
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 2.7e-184 649.4 624 55.6
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 2.7e-184 649.4 614 57.2
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 3.0e-183 646.0 633 56.4
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 4.0e-183 645.6 651 55.5
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 5.2e-183 645.2 612 55.9
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 5.2e-183 645.2 627 56.6
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 2.0e-182 643.3 618 55.5
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 9.7e-182 641.0 604 54.5
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 2.8e-181 639.4 619 55.1
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 3.7e-181 639.0 658 54.1
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 2.4e-180 636.3 669 53.8
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 3.6e-176 622.5 618 53.6
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 1.8e-175 620.2 613 52.5
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 4.0e-175 619.0 602 55.0
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 1.2e-174 617.5 578 57.8
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 2.6e-174 616.3 628 52.1
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 7.5e-174 614.8 629 51.7
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 2.8e-173 612.8 609 54.8
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 1.4e-172 610.5 511 64.4
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 9.1e-172 607.8 570 59.1
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 1.3e-170 604.0 595 54.6
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.3e-170 603.2 635 52.3
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 3.3e-169 599.4 629 50.9
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 4.2e-169 599.0 622 51.8
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 2.3e-167 593.2 583 55.4
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 8.9e-167 591.3 613 54.3
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 2.0e-166 590.1 605 51.9
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 4.4e-166 589.0 615 51.1
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 1.3e-165 587.4 598 52.3
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 1.7e-165 587.0 636 51.4
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 1.4e-164 583.9 606 52.3
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 7.0e-164 581.6 606 52.1
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 9.2e-164 581.3 642 52.5
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 9.2e-164 581.3 597 51.8
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 9.2e-164 581.3 597 51.8
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.6e-163 580.5 624 50.2
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 7.8e-163 578.2 632 50.3
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 7.8e-163 578.2 603 50.6
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.3e-162 577.4 562 55.7
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 2.3e-162 576.6 483 61.5
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 5.0e-162 575.5 619 50.2
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 1.1e-161 574.3 598 55.0
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.5e-161 573.9 676 49.4
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 2.5e-161 573.2 631 51.3
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 3.3e-161 572.8 600 50.3
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 3.3e-161 572.8 600 50.3
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 5.6e-161 572.0 600 50.3
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 7.3e-161 571.6 674 49.4
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 2.8e-160 569.7 558 56.1
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 6.1e-160 568.5 605 51.1
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.5e-158 563.9 623 49.6
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 3.4e-158 562.8 520 58.3
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 5.8e-158 562.0 622 49.8
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 1.1e-156 557.8 602 51.7
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 7.8e-155 551.6 578 51.7
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 5.6e-153 545.4 472 60.0
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 4.0e-151 539.3 586 49.3
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 5.2e-151 538.9 466 62.7
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 6.8e-151 538.5 636 48.1
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 7.5e-150 535.0 511 56.4
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 1.3e-149 534.3 638 48.3
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 2.2e-149 533.5 599 51.1
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.4e-148 530.0 562 50.9
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 4.1e-148 529.3 507 55.4
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 1.6e-147 527.3 625 47.0
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 2.1e-147 526.9 530 53.2
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 1.0e-146 524.6 519 55.7
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 2.5e-145 520.0 553 51.5
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.7e-144 515.8 627 48.3
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 1.2e-142 511.1 578 48.8
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 3.5e-139 499.6 477 56.8
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 3.6e-136 489.6 516 51.4
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.6e-120 436.4 420 54.3
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.9e-117 426.0 484 49.0
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.9e-117 426.0 484 49.0
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 2.4e-116 423.7 615 43.1
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 9.3e-116 421.8 639 45.9
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 1.2e-115 421.4 696 37.5
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 1.3e-114 417.9 461 48.2
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 3.0e-114 416.8 537 46.0
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 7.6e-110 402.1 618 41.7
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 4.2e-108 396.4 534 43.6
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 5.8e-102 375.9 387 51.4
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 2.1e-99 367.5 510 44.7
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 2.3e-74 284.3 671 31.9
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 1.0e-69 268.9 502 35.9
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.8e-58 231.5 290 48.3
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 3.8e-53 213.8 416 33.4
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.5e-52 211.8 344 39.2
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 2.0e-46 191.4 194 46.9
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 8.6e-45 186.0 135 67.4
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 6.6e-29 133.3 181 39.8
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 9.2e-23 112.8 64 81.2
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.6e-22 112.1 152 46.7
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 8.1e-19 99.8 123 48.8
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-08 64.3 49 59.2
CDE04G1491 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 1.6e-06 58.9 48 50.0


User provided reference genes

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