Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 0.0e+00 1200.3 617 100.0
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 1.1e-267 926.4 592 79.2
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 5.3e-257 891.0 606 76.6
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 2.0e-232 809.3 600 69.2
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.9e-226 788.9 600 66.3
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 3.9e-223 778.5 603 66.7
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 8.6e-223 777.3 596 66.4
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 5.8e-219 764.6 540 70.4
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 7.5e-219 764.2 603 66.7
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 9.9e-219 763.8 597 65.0
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 2.4e-217 759.2 599 65.4
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 7.1e-217 757.7 540 70.2
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 3.6e-213 745.3 597 64.2
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 6.2e-213 744.6 548 68.4
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 5.2e-212 741.5 601 63.9
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 1.9e-209 733.0 622 62.5
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 1.2e-208 730.3 617 62.1
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 1.2e-208 730.3 598 63.9
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.6e-208 729.9 604 63.2
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 7.8e-208 727.6 583 64.2
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 1.0e-207 727.2 595 62.4
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 5.1e-207 724.9 518 69.3
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 1.1e-206 723.8 599 62.3
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 1.1e-206 723.8 597 62.8
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 1.5e-206 723.4 601 62.7
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 1.9e-206 723.0 597 62.6
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 5.6e-206 721.5 536 68.3
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 5.6e-206 721.5 601 62.9
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 7.3e-206 721.1 585 63.1
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 9.6e-206 720.7 603 62.2
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 1.3e-205 720.3 579 64.6
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 4.8e-205 718.4 568 63.7
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 6.2e-205 718.0 592 62.3
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 6.2e-205 718.0 596 62.1
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 1.5e-203 713.4 584 65.1
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.3e-202 710.3 604 60.6
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 1.7e-202 709.9 541 65.4
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 2.2e-202 709.5 532 66.4
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 2.9e-202 709.1 520 67.9
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 2.9e-202 709.1 584 62.5
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 1.9e-201 706.4 595 61.8
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 2.4e-201 706.1 524 66.8
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 4.2e-201 705.3 515 67.6
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 9.3e-201 704.1 597 60.3
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.2e-200 703.7 524 66.6
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 1.6e-200 703.4 592 60.5
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 6.0e-200 701.4 583 61.6
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 7.8e-200 701.0 544 65.1
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 1.3e-199 700.3 583 61.1
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 1.7e-199 699.9 592 62.3
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.0e-199 699.1 524 66.2
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 2.1e-197 693.0 543 63.0
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 1.4e-196 690.3 596 59.6
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 6.9e-196 688.0 523 67.7
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 6.9e-196 688.0 662 57.4
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 7.6e-195 684.5 610 57.5
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 2.2e-194 682.9 604 59.1
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 5.4e-193 678.3 786 48.7
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 1.2e-192 677.2 592 58.4
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.2e-192 677.2 533 64.2
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 2.7e-192 676.0 587 59.8
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 1.0e-191 674.1 588 59.9
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 2.3e-191 672.9 537 63.7
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 3.9e-191 672.2 538 63.8
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 1.5e-190 670.2 606 54.8
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 2.5e-190 669.5 600 57.7
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 3.3e-190 669.1 582 60.3
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 1.8e-188 663.3 577 60.0
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 3.1e-188 662.5 602 55.0
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 6.9e-188 661.4 615 54.0
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 1.5e-187 660.2 628 55.1
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 5.8e-187 658.3 545 62.2
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 1.7e-186 656.8 602 54.8
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 3.8e-186 655.6 602 54.7
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 9.3e-185 651.0 611 53.2
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 1.2e-184 650.6 542 58.9
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 1.2e-184 650.6 610 54.1
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 1.6e-184 650.2 610 54.1
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 2.3e-183 646.4 616 52.9
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 6.7e-183 644.8 605 52.9
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 9.6e-182 641.0 539 58.4
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 2.1e-181 639.8 541 58.4
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 4.0e-180 635.6 495 63.4
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 4.5e-179 632.1 482 67.8
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 5.0e-178 628.6 519 59.0
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 2.2e-173 613.2 614 55.2
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 1.5e-171 607.1 487 62.2
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 3.2e-169 599.4 512 59.8
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 3.9e-167 592.4 530 57.7
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 1.0e-159 567.8 516 54.7
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 3.9e-159 565.8 541 54.0
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 2.2e-157 560.1 473 62.6
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 1.8e-156 557.0 567 53.3
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 7.7e-155 551.6 597 49.7
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 5.7e-150 535.4 536 52.1
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 3.7e-149 532.7 351 75.8
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 1.6e-144 517.3 634 47.9
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 6.1e-128 462.2 548 46.5
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 4.3e-121 439.5 508 45.1
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 2.3e-119 433.7 300 72.3
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 4.9e-117 426.0 537 43.4
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 6.4e-117 425.6 445 50.1
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 5.4e-108 396.0 372 55.4
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 2.1e-107 394.0 335 60.9
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.0e-106 391.7 548 40.0
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 5.8e-86 322.8 213 76.1
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 4.5e-78 296.6 211 70.6
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.4e-76 291.6 289 52.9
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 1.9e-73 281.2 420 42.6
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.4e-71 275.0 307 51.1
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 1.8e-71 274.6 584 31.8
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 3.4e-70 270.4 363 38.6
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 3.0e-66 257.3 175 73.1
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.3e-64 251.9 303 43.9
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 6.5e-53 213.0 173 61.3
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 2.3e-42 177.9 109 78.0
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.6e-38 165.2 123 64.2
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 2.0e-38 164.9 122 68.9
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.2e-35 155.6 248 41.5
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.0e-34 152.5 114 64.0
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 3.3e-33 147.5 102 69.6
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.5e-28 131.3 112 58.9
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 8.8e-26 122.9 72 79.2
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 3.7e-24 117.5 98 52.0
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 8.3e-24 116.3 572 21.9
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.1e-23 115.9 158 39.2
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 5.4e-23 113.6 216 34.3
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 3.5e-22 110.9 70 74.3
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.1e-20 105.9 126 42.9
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 3.2e-20 104.4 77 63.6
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 5.5e-20 103.6 98 52.0
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 1.6e-19 102.1 77 62.3
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 5.2e-18 97.1 110 48.2
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 3.1e-15 87.8 65 61.5
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 7.7e-14 83.2 68 58.8
ECA233G4564 Erigeron canadensis HOM05D005072 ORTHO05D189103 7.7e-14 83.2 449 26.1
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 1.0e-13 82.8 114 45.6
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 3.8e-13 80.9 58 72.4
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 8.0e-11 73.2 172 34.3
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 2.6e-09 68.2 60 56.7
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 5.7e-09 67.0 138 34.8
Lsat_1_v5_gn_2_76440 Lactuca sativa HOM05D000807 ORTHO05D000662 3.2e-07 61.2 35 74.3
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 5.9e-06 57.0 239 23.4


User provided reference genes

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