Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 2.1e-266 921.8 468 100.0
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 2.4e-185 652.5 455 76.0
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 7.3e-174 614.4 429 75.5
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 7.3e-166 587.8 466 67.6
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 1.7e-162 576.6 451 67.8
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 3.2e-161 572.4 467 64.5
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 1.2e-160 570.5 467 65.1
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 1.8e-159 566.6 462 64.5
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 8.7e-159 564.3 466 63.5
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 8.7e-159 564.3 448 65.2
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 1.1e-158 563.9 464 64.4
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 7.4e-158 561.2 457 63.2
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 8.1e-157 557.8 463 62.6
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 1.8e-156 556.6 479 61.2
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 2.4e-156 556.2 449 63.7
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 3.1e-156 555.8 452 64.4
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 4.0e-156 555.4 462 63.0
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 5.3e-156 555.1 449 63.5
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 9.0e-156 554.3 473 61.7
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 9.0e-156 554.3 448 64.1
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 1.2e-155 553.9 449 63.3
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 2.0e-155 553.1 520 57.9
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 3.4e-155 552.4 449 64.6
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 3.4e-155 552.4 485 62.1
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 3.4e-155 552.4 453 64.0
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 5.8e-155 551.6 459 62.3
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 7.6e-155 551.2 459 64.7
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 1.7e-154 550.1 459 63.0
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 2.2e-154 549.7 449 63.9
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 2.2e-154 549.7 462 63.9
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 3.8e-154 548.9 452 63.1
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 1.9e-153 546.6 444 64.6
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 5.5e-153 545.0 453 62.7
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 9.3e-153 544.3 459 62.3
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 9.3e-153 544.3 453 64.2
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 1.2e-152 543.9 452 62.8
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 1.6e-152 543.5 459 62.3
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 2.1e-152 543.1 453 62.9
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 3.5e-152 542.3 440 65.5
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 3.5e-152 542.3 450 64.2
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 4.6e-152 542.0 447 63.1
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 4.6e-152 542.0 505 58.2
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 4.6e-152 542.0 457 62.4
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 7.9e-152 541.2 449 63.7
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 1.3e-151 540.4 465 61.3
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 1.8e-151 540.0 455 63.3
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 2.3e-151 539.7 446 63.0
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 2.3e-151 539.7 476 60.3
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 2.3e-151 539.7 455 62.4
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 5.1e-151 538.5 454 62.1
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 8.7e-151 537.7 449 63.5
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 3.3e-150 535.8 468 61.3
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 2.1e-149 533.1 453 60.5
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 2.8e-149 532.7 450 61.6
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 2.8e-149 532.7 450 61.3
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 3.7e-149 532.3 447 62.0
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 8.2e-149 531.2 461 60.5
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 1.1e-148 530.8 447 62.0
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.1e-148 530.8 461 62.5
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 2.4e-148 529.6 459 61.2
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 3.1e-148 529.3 463 60.9
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 4.0e-148 528.9 447 62.2
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 4.0e-148 528.9 447 61.7
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 5.3e-148 528.5 500 55.8
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 1.7e-146 523.5 454 61.2
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 1.7e-146 523.5 461 61.0
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 2.2e-146 523.1 443 63.0
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 2.9e-146 522.7 445 62.0
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 3.8e-146 522.3 468 57.9
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 4.9e-146 521.9 461 61.6
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 6.5e-146 521.5 445 61.6
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 2.5e-145 519.6 461 60.7
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 3.2e-145 519.2 459 59.9
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 4.2e-145 518.8 459 60.1
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 2.1e-144 516.5 459 59.7
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 2.7e-144 516.2 467 57.6
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 3.5e-144 515.8 469 60.3
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 4.6e-144 515.4 463 59.2
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 1.3e-143 513.8 446 62.3
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 1.3e-143 513.8 454 59.3
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 1.8e-143 513.5 459 59.9
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 3.9e-143 512.3 459 59.7
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 3.9e-143 512.3 459 59.7
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 1.5e-142 510.4 443 60.5
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 5.7e-142 508.4 445 59.3
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 1.3e-141 507.3 464 58.8
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 2.2e-141 506.5 481 54.7
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 1.8e-140 503.4 449 59.7
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 6.9e-140 501.5 461 60.7
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 6.9e-140 501.5 443 59.4
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 2.2e-138 496.5 447 59.7
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 7.2e-137 491.5 465 55.9
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 6.1e-136 488.4 516 51.4
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 7.9e-136 488.0 415 61.9
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 5.3e-132 475.3 482 54.1
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 1.5e-131 473.8 448 56.0
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 1.1e-129 467.6 432 58.8
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.9e-129 466.8 450 58.0
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 1.9e-129 466.8 429 59.9
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 4.7e-128 462.2 447 56.4
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 1.0e-127 461.1 470 53.8
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 3.0e-127 459.5 447 56.2
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 5.7e-126 455.3 481 53.0
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 9.7e-126 454.5 403 60.0
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 4.8e-125 452.2 350 66.6
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 5.3e-116 422.2 354 61.3
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 2.1e-112 410.2 452 49.1
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 3.0e-103 379.8 459 48.6
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 2.6e-102 376.7 484 44.4
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 1.3e-101 374.4 524 42.6
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 2.3e-98 363.6 306 63.4
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 5.0e-98 362.5 359 55.2
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 8.6e-98 361.7 275 65.8
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 1.8e-95 354.0 479 44.1
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 5.4e-92 342.4 371 53.4
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 2.8e-88 330.1 269 63.2
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 1.6e-80 304.3 624 35.3
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 9.5e-73 278.5 534 37.3
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 2.7e-59 233.8 454 34.6
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 2.8e-56 223.8 467 33.6
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 1.4e-47 194.9 491 30.8
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 1.2e-46 191.8 171 61.4
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 6.0e-43 179.5 250 45.2
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 1.3e-40 171.8 252 43.3
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 7.4e-33 146.0 218 41.3
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 3.0e-26 124.0 193 46.6
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 5.1e-26 123.2 193 46.6
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 1.6e-24 118.2 122 54.1
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 2.0e-22 111.3 91 67.0
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 1.1e-20 105.5 153 45.1
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 6.1e-19 99.8 233 32.2
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 1.1e-15 89.0 131 41.2
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 1.2e-14 85.5 76 51.3
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 3.4e-14 84.0 95 46.3
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 4.5e-14 83.6 109 44.0
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 3.2e-12 77.4 65 61.5
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 1.6e-11 75.1 111 42.3
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 2.1e-11 74.7 125 41.6
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 3.3e-09 67.4 93 44.1
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 1.3e-08 65.5 93 43.0
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 3.7e-08 63.9 42 66.7
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 1.8e-07 61.6 59 55.9
A02p34280 Brassica napus HOM05D004999 ORTHO05D021597 4.1e-07 60.5 141 31.2
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 9.1e-07 59.3 34 76.5


User provided reference genes

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