Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 3.1e-87 325.1 163 100.0
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 6.8e-34 147.9 168 56.0
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 5.7e-33 144.8 183 54.1
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 1.6e-22 110.2 183 43.7
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 1.0e-21 107.5 182 43.4
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 1.0e-21 107.5 152 49.3
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 1.3e-21 107.1 148 46.6
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 1.5e-20 103.6 147 48.3
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 2.5e-20 102.8 173 42.2
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 3.3e-20 102.4 182 39.0
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 4.7e-19 98.6 147 46.3
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.0e-18 97.4 147 47.6
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 5.2e-18 95.1 167 43.7
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 6.8e-18 94.7 163 44.2
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.2e-17 94.0 161 41.6
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 1.5e-17 93.6 149 43.0
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 2.0e-17 93.2 155 43.9
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 2.0e-17 93.2 176 44.3
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 3.4e-17 92.4 144 47.2
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 4.4e-17 92.0 141 47.5
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 4.4e-17 92.0 144 47.2
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 4.4e-17 92.0 150 44.7
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 1.7e-16 90.1 142 43.7
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 2.2e-16 89.7 164 40.9
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 2.2e-16 89.7 162 40.1
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 2.9e-16 89.4 154 42.9
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 3.7e-16 89.0 137 44.5
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 3.7e-16 89.0 141 43.3
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 3.7e-16 89.0 169 39.1
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 6.4e-16 88.2 163 41.7
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 6.4e-16 88.2 152 42.8
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 1.4e-15 87.0 151 41.7
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 1.4e-15 87.0 147 40.8
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.4e-15 87.0 149 43.6
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 2.4e-15 86.3 158 41.8
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 3.2e-15 85.9 153 43.8
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 3.2e-15 85.9 160 38.8
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 5.4e-15 85.1 148 43.2
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 5.4e-15 85.1 164 40.9
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 5.4e-15 85.1 177 39.0
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.2e-14 84.0 151 41.1
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 2.0e-14 83.2 160 38.8
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.0e-14 83.2 161 41.0
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.0e-14 83.2 150 43.3
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 2.0e-14 83.2 150 43.3
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 3.5e-14 82.4 108 45.4
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 3.5e-14 82.4 148 42.6
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 3.5e-14 82.4 143 44.8
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 3.5e-14 82.4 163 41.7
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 3.5e-14 82.4 137 43.1
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 4.6e-14 82.0 108 47.2
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 6.0e-14 81.6 142 45.1
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 6.0e-14 81.6 156 40.4
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 1.0e-13 80.9 143 40.6
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 1.0e-13 80.9 148 42.6
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 1.0e-13 80.9 174 37.9
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 1.0e-13 80.9 145 44.1
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 1.3e-13 80.5 109 46.8
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 1.3e-13 80.5 154 39.6
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 1.7e-13 80.1 161 39.1
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 1.7e-13 80.1 141 39.0
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 2.3e-13 79.7 108 44.4
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 2.3e-13 79.7 148 40.5
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 2.3e-13 79.7 176 34.7
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 2.3e-13 79.7 133 46.6
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 2.3e-13 79.7 142 43.7
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 3.0e-13 79.3 161 39.1
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 3.0e-13 79.3 144 41.0
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 3.0e-13 79.3 144 41.0
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 3.9e-13 79.0 151 39.1
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 3.9e-13 79.0 143 40.6
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 3.9e-13 79.0 144 39.6
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 3.9e-13 79.0 167 39.5
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 5.0e-13 78.6 161 39.8
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 6.6e-13 78.2 148 43.2
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 6.6e-13 78.2 144 43.8
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 8.6e-13 77.8 149 45.6
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 8.6e-13 77.8 154 42.2
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 1.1e-12 77.4 148 43.2
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 1.1e-12 77.4 142 43.7
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 1.1e-12 77.4 148 41.2
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 1.5e-12 77.0 148 42.6
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 1.5e-12 77.0 148 42.6
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 1.5e-12 77.0 156 42.3
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 1.9e-12 76.6 127 41.7
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 1.9e-12 76.6 144 42.4
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 1.9e-12 76.6 153 41.2
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 3.3e-12 75.9 148 43.2
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.3e-12 75.9 176 34.7
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 3.3e-12 75.9 164 39.6
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 5.6e-12 75.1 146 34.9
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 5.6e-12 75.1 160 34.4
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 7.3e-12 74.7 113 47.8
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 7.3e-12 74.7 146 41.1
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 7.3e-12 74.7 146 40.4
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 7.3e-12 74.7 146 41.1
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 7.3e-12 74.7 146 41.1
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 7.3e-12 74.7 146 40.4
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 9.5e-12 74.3 121 45.5
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 9.5e-12 74.3 118 41.5
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 9.5e-12 74.3 157 40.8
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 1.2e-11 73.9 106 44.3
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.2e-11 73.9 141 41.8
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 1.2e-11 73.9 158 39.9
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.2e-11 73.9 116 43.1
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.6e-11 73.6 157 36.9
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.1e-11 73.2 159 37.1
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 2.1e-11 73.2 145 37.9
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 2.8e-11 72.8 108 45.4
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 2.8e-11 72.8 167 39.5
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 3.6e-11 72.4 158 40.5
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 3.6e-11 72.4 159 40.3
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 6.2e-11 71.6 105 41.9
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 6.2e-11 71.6 142 38.0
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 6.2e-11 71.6 142 38.0
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 1.1e-10 70.9 136 40.4
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 1.1e-10 70.9 145 42.8
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.4e-10 70.5 175 33.1
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.8e-10 70.1 156 36.5
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.8e-10 70.1 153 37.3
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 1.8e-10 70.1 135 39.3
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 1.8e-10 70.1 159 39.6
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 3.1e-10 69.3 144 40.3
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 4.0e-10 68.9 118 42.4
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 6.8e-10 68.2 133 39.1
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 6.8e-10 68.2 117 45.3
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 6.8e-10 68.2 114 42.1
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 6.8e-10 68.2 110 39.1
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 8.9e-10 67.8 137 40.9
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 8.9e-10 67.8 138 38.4
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 1.2e-09 67.4 112 42.9
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.2e-09 67.4 175 32.6
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 2.0e-09 66.6 135 38.5
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.6e-09 66.2 148 37.2
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 4.4e-09 65.5 108 40.7
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 4.4e-09 65.5 108 40.7
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 4.4e-09 65.5 108 40.7
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 4.4e-09 65.5 108 40.7
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 4.4e-09 65.5 121 43.0
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 5.8e-09 65.1 166 34.3
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 9.8e-09 64.3 108 40.7
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 9.8e-09 64.3 78 47.4
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 9.8e-09 64.3 146 36.3
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 9.8e-09 64.3 146 36.3
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 1.7e-08 63.5 140 36.4
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 2.2e-08 63.2 116 37.1
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 2.9e-08 62.8 40 72.5
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 2.9e-08 62.8 152 33.6
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 3.7e-08 62.4 54 59.3
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 4.9e-08 62.0 114 37.7
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 1.1e-07 60.8 160 35.0
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.4e-07 60.5 40 77.5
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 2.4e-07 59.7 133 39.8
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 3.2e-07 59.3 140 37.9
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 4.1e-07 58.9 173 31.2
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 4.1e-07 58.9 140 36.4
Lsat_1_v5_gn_5_85601 Lactuca sativa HOM05D007665 ORTHO05D008293 5.4e-07 58.5 158 31.0
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 1.2e-06 57.4 134 35.8
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.1e-06 56.6 50 58.0
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 3.5e-06 55.8 41 63.4
Zm00001eb134870 Zea mays HOM05D004032 ORTHO05D004462 7.8e-06 54.7 34 79.4
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 7.8e-06 54.7 61 49.2


User provided reference genes

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