Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 0.0e+00 1302.0 655 100.0
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 3.5e-299 1031.2 658 80.2
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 7.5e-233 810.8 659 63.1
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 5.9e-230 801.2 666 62.9
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 1.5e-228 796.6 651 62.2
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.5e-228 796.6 653 63.2
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 2.5e-228 795.8 655 61.8
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 4.2e-228 795.0 658 62.0
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 1.6e-227 793.1 666 60.8
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 3.6e-227 792.0 672 62.4
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 6.1e-227 791.2 662 64.2
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 8.0e-227 790.8 661 63.5
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 3.0e-226 788.9 651 61.6
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 3.0e-226 788.9 661 63.2
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 5.2e-226 788.1 503 77.3
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 1.5e-225 786.6 659 63.9
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 2.0e-225 786.2 659 61.5
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 3.7e-224 781.9 666 63.1
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 2.4e-223 779.2 658 61.2
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 3.1e-223 778.9 655 61.1
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 5.4e-223 778.1 656 60.7
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 5.0e-221 771.5 654 61.5
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 5.6e-220 768.1 668 62.1
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 7.2e-220 767.7 655 60.5
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 1.4e-218 763.5 661 59.2
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 1.4e-218 763.5 707 59.3
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 1.4e-218 763.5 659 60.2
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 3.0e-218 762.3 664 60.7
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 4.0e-218 761.9 654 61.0
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 4.0e-218 761.9 655 59.8
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 3.4e-217 758.8 664 59.8
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 4.4e-217 758.4 652 59.4
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 5.7e-217 758.1 644 59.9
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 1.7e-216 756.5 667 60.6
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 2.2e-216 756.1 651 60.1
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 4.9e-216 755.0 656 58.8
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 6.4e-216 754.6 642 59.7
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 3.2e-215 752.3 655 60.0
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 1.6e-214 750.0 659 59.6
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 2.7e-214 749.2 653 59.7
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 5.9e-214 748.0 623 61.2
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 1.3e-213 746.9 644 59.9
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 1.3e-213 746.9 651 59.1
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 1.7e-213 746.5 656 59.8
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 3.9e-213 745.3 656 59.3
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 5.0e-213 745.0 670 58.8
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 3.3e-212 742.3 661 58.2
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 3.3e-212 742.3 661 58.2
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 3.6e-211 738.8 662 60.3
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 8.0e-211 737.6 650 60.2
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 3.1e-210 735.7 665 58.8
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 1.2e-209 733.8 658 58.4
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 2.0e-209 733.0 650 59.4
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 3.4e-209 732.3 651 58.8
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 5.8e-209 731.5 655 59.4
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 5.8e-209 731.5 649 58.9
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 1.4e-207 726.9 659 58.7
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 3.2e-207 725.7 653 58.0
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 9.2e-207 724.2 651 57.5
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 9.2e-207 724.2 669 58.3
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 3.3e-204 715.7 658 56.5
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 4.3e-204 715.3 657 57.7
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 4.3e-204 715.3 647 56.3
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 7.3e-204 714.5 639 58.8
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 1.6e-203 713.4 646 58.0
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 4.7e-203 711.8 608 60.5
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 4.0e-202 708.8 657 56.0
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 1.5e-201 706.8 655 57.3
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 2.6e-201 706.1 659 56.0
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 1.3e-200 703.7 674 56.7
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 8.3e-200 701.0 656 57.3
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 1.9e-199 699.9 658 57.0
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 1.6e-198 696.8 658 55.5
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 2.3e-197 693.0 657 55.7
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.9e-196 689.9 679 53.9
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 6.2e-195 684.9 651 54.4
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 6.8e-194 681.4 656 56.4
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.3e-192 677.2 586 61.9
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 3.7e-192 675.6 654 56.3
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 1.2e-190 670.6 654 55.2
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 7.8e-190 667.9 495 66.9
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.2e-187 660.6 561 62.6
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 8.1e-187 657.9 651 55.3
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 3.1e-186 656.0 681 52.9
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 1.6e-179 633.6 538 59.9
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 1.1e-178 630.9 653 54.4
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 9.0e-178 627.9 649 52.7
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 3.8e-176 622.5 528 59.5
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 8.7e-173 611.3 660 50.2
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 1.3e-171 607.4 688 50.0
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 3.6e-171 605.9 668 50.3
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 1.8e-170 603.6 502 61.0
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 9.0e-170 601.3 696 48.4
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 4.6e-166 589.0 537 59.8
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 2.7e-158 563.1 541 54.3
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 6.3e-155 552.0 597 52.8
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 2.9e-136 490.0 483 54.5
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 9.4e-127 458.4 650 42.3
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 2.1e-126 457.2 435 57.5
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 1.2e-121 441.4 524 48.3
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 2.1e-118 430.6 753 38.0
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 5.9e-113 412.5 682 39.3
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 2.4e-98 364.0 342 55.8
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.0e-96 358.6 383 55.4
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 2.3e-96 357.5 287 60.6
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 3.1e-93 347.1 290 64.8
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 3.7e-91 340.1 586 37.9
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.3e-88 331.6 337 54.9
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 5.8e-84 316.2 657 34.1
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 2.3e-80 304.3 283 56.9
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 3.0e-80 303.9 420 47.9
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 1.5e-79 301.6 291 57.4
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 2.5e-79 300.8 528 36.0
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 3.9e-72 276.9 330 47.9
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 7.8e-65 252.7 206 65.5
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 2.6e-60 237.7 174 69.5
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 1.1e-58 232.3 381 39.6
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 6.2e-54 216.5 149 66.4
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 5.3e-53 213.4 196 57.7
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 4.9e-51 206.8 380 38.9
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.9e-47 194.9 155 61.3
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 2.1e-38 164.9 118 61.9
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 2.4e-37 161.4 680 27.9
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 1.5e-36 158.7 336 32.4
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 6.9e-29 133.3 178 44.9
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 3.2e-18 97.8 124 44.4
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 9.7e-15 86.3 109 47.7
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 2.2e-14 85.1 90 47.8
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 8.2e-14 83.2 57 71.9
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 1.4e-13 82.4 158 37.3
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.8e-13 82.0 57 64.9
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 3.1e-13 81.3 109 44.0
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 3.1e-13 81.3 63 61.9
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 3.8e-11 74.3 53 66.0
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 3.8e-11 74.3 63 57.1
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 1.9e-10 72.0 140 37.9
Cre03.g145667 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 4.4e-07 60.8 105 34.3


User provided reference genes

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