Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.8e-170 602.4 297 100.0
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 1.2e-76 290.8 180 77.8
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 3.4e-76 289.3 181 78.5
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 8.4e-75 284.6 180 78.3
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 5.1e-72 275.4 178 71.3
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 3.7e-70 269.2 177 72.9
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 4.8e-70 268.9 178 70.2
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 4.8e-70 268.9 172 73.8
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 2.4e-69 266.5 178 71.3
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 9.0e-69 264.6 178 70.8
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 9.0e-69 264.6 178 71.3
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 1.2e-68 264.2 178 70.8
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.5e-68 263.8 176 70.5
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 2.6e-68 263.1 171 70.8
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 2.6e-68 263.1 171 71.9
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 2.6e-68 263.1 178 70.8
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 7.7e-68 261.5 177 69.5
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 1.3e-67 260.8 178 66.9
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 1.7e-67 260.4 174 69.5
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 2.2e-67 260.0 176 69.3
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 2.2e-67 260.0 178 70.8
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 2.9e-67 259.6 170 72.4
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 8.5e-67 258.1 173 71.7
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 8.5e-67 258.1 177 69.5
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 2.5e-66 256.5 178 68.0
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 2.5e-66 256.5 175 70.3
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 2.5e-66 256.5 178 68.0
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 3.2e-66 256.1 177 67.8
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 9.4e-66 254.6 174 69.5
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 1.6e-65 253.8 172 69.2
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.6e-65 253.8 172 69.2
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 2.1e-65 253.4 174 67.8
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 3.6e-65 252.7 177 66.1
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 3.6e-65 252.7 175 66.9
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 6.1e-65 251.9 170 72.4
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 7.9e-65 251.5 171 69.6
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.0e-64 251.1 172 68.6
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 1.8e-64 250.4 178 66.9
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 2.3e-64 250.0 178 68.0
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 3.0e-64 249.6 175 66.9
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 3.9e-64 249.2 178 68.5
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 5.1e-64 248.8 177 66.1
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 5.1e-64 248.8 177 67.2
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 5.1e-64 248.8 175 66.3
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 6.7e-64 248.4 170 67.6
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 8.8e-64 248.1 174 66.1
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 1.1e-63 247.7 178 65.2
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.1e-63 247.7 172 68.0
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 1.1e-63 247.7 175 66.9
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 1.1e-63 247.7 171 68.4
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 1.5e-63 247.3 172 68.6
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 1.5e-63 247.3 159 72.3
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.5e-63 247.3 176 68.2
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 2.0e-63 246.9 184 64.7
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 2.0e-63 246.9 177 64.4
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 2.0e-63 246.9 178 62.9
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 2.5e-63 246.5 180 67.2
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 3.3e-63 246.1 175 66.9
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 5.7e-63 245.4 177 67.2
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 7.4e-63 245.0 173 65.9
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 9.7e-63 244.6 178 65.7
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 9.7e-63 244.6 175 65.7
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 1.3e-62 244.2 174 66.1
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 1.7e-62 243.8 175 65.1
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 3.7e-62 242.7 175 65.1
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 1.4e-61 240.7 181 64.6
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 1.8e-61 240.4 177 65.0
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 3.1e-61 239.6 173 64.7
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 4.1e-61 239.2 176 63.1
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 4.1e-61 239.2 176 63.1
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 9.1e-61 238.0 164 67.7
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 1.2e-60 237.7 176 63.6
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 1.2e-60 237.7 181 59.7
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 2.0e-60 236.9 181 59.7
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 5.9e-60 235.3 172 65.7
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.7e-59 233.8 174 62.1
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.7e-59 233.8 184 62.5
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 2.2e-59 233.4 164 67.1
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 2.2e-59 233.4 164 68.9
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 2.9e-59 233.0 177 66.1
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 3.8e-59 232.6 173 62.4
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.1e-58 231.1 178 61.2
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.1e-58 231.1 174 61.5
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 1.4e-58 230.7 168 64.3
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 2.5e-58 229.9 187 56.1
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 4.2e-58 229.2 176 61.9
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 4.2e-58 229.2 176 61.9
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 7.2e-58 228.4 180 59.4
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 9.4e-58 228.0 168 64.3
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.6e-57 227.3 175 63.4
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 2.1e-57 226.9 161 68.9
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 7.9e-57 224.9 191 59.2
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 3.0e-56 223.0 173 61.3
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 1.5e-55 220.7 156 67.9
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 2.0e-55 220.3 170 62.4
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 1.7e-54 217.2 178 60.1
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 3.1e-53 213.0 175 58.3
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 4.1e-53 212.6 176 57.4
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 5.3e-53 212.2 174 58.0
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 7.0e-53 211.8 161 62.7
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 4.5e-52 209.1 177 56.5
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 7.7e-52 208.4 177 56.5
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 3.8e-51 206.1 150 66.0
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 6.5e-51 205.3 178 53.4
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 8.5e-51 204.9 161 64.0
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.9e-50 203.8 160 61.9
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 2.1e-49 200.3 161 59.6
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 6.1e-49 198.7 176 53.4
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 1.4e-45 187.6 177 50.8
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 3.1e-45 186.4 127 68.5
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 5.3e-45 185.7 130 70.0
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 7.0e-45 185.3 124 70.2
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.5e-44 183.0 166 53.6
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.5e-44 183.0 164 54.3
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 7.7e-44 181.8 165 55.2
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.3e-43 181.0 166 53.6
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 2.7e-41 173.3 187 47.6
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.6e-41 172.9 150 56.7
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 2.3e-40 170.2 124 62.1
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.0e-40 169.5 160 51.9
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 1.1e-37 161.4 112 67.9
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 2.4e-37 160.2 141 56.0
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.3e-37 159.1 150 52.7
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 2.5e-34 150.2 166 47.6
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.5e-34 149.1 123 58.5
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.3e-32 143.7 163 46.0
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 2.0e-31 140.6 182 41.2
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 3.4e-31 139.8 173 42.8
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 5.7e-31 139.0 178 43.8
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 5.7e-31 139.0 100 63.0
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 2.4e-29 133.7 92 64.1
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 2.0e-23 114.0 177 36.7
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 9.8e-23 111.7 80 66.2
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.5e-20 102.8 98 48.0
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.5e-15 87.8 117 43.6
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 7.0e-13 79.0 44 81.8
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 4.6e-12 76.3 44 77.3
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 6.0e-12 75.9 44 77.3
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 3.9e-11 73.2 48 68.8
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 3.9e-11 73.2 48 68.8
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.8e-08 64.3 53 54.7
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 2.6e-07 60.5 105 37.1
SEGI_21412 Sequoiadendron giganteum HOM05D005240 ORTHO05D006471 2.6e-07 60.5 45 64.4


User provided reference genes

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