Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 8.7e-151 537.0 275 100.0
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 1.4e-92 343.6 272 73.5
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 8.9e-87 324.3 286 66.8
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 2.0e-86 323.2 281 65.8
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 3.9e-82 308.9 285 62.8
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 8.6e-82 307.8 284 64.1
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.1e-79 300.8 288 62.2
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 5.2e-79 298.5 261 64.4
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 2.2e-77 293.1 287 59.9
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 8.4e-77 291.2 338 54.7
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 2.4e-76 289.7 292 58.9
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 2.4e-76 289.7 324 56.5
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 9.2e-76 287.7 287 60.3
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 1.6e-75 287.0 292 57.5
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 3.5e-75 285.8 292 57.5
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 3.9e-74 282.3 287 58.5
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 2.5e-73 279.6 291 56.7
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 7.3e-73 278.1 291 56.4
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.6e-72 276.9 291 56.4
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.8e-71 273.5 383 47.8
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 2.0e-70 270.0 290 56.6
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 2.0e-70 270.0 290 56.6
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 2.6e-70 269.6 290 56.2
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 7.6e-70 268.1 289 58.1
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 3.8e-69 265.8 300 54.3
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 2.4e-68 263.1 280 56.4
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 2.4e-68 263.1 295 56.9
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 9.3e-68 261.2 398 45.7
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 3.5e-67 259.2 296 53.7
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 1.3e-66 257.3 291 56.7
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 2.5e-65 253.1 291 53.3
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 1.3e-64 250.8 291 54.6
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 9.0e-63 244.6 284 54.6
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 3.4e-62 242.7 290 51.7
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 4.4e-62 242.3 287 53.3
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 1.7e-61 240.4 287 53.3
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 2.2e-61 240.0 209 67.5
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 2.9e-61 239.6 289 51.9
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 2.9e-61 239.6 293 53.2
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 4.9e-61 238.8 260 56.9
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 9.3e-60 234.6 288 52.1
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 9.3e-60 234.6 287 51.2
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 1.6e-59 233.8 291 54.3
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.1e-59 233.4 263 56.3
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 3.5e-59 232.6 285 50.9
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 1.3e-58 230.7 263 55.5
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.7e-58 230.3 263 55.5
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 3.9e-58 229.2 265 57.4
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 2.5e-57 226.5 289 49.8
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 7.3e-57 224.9 233 58.4
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.4e-55 220.7 288 49.3
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 1.8e-55 220.3 239 57.7
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 2.4e-55 219.9 266 51.5
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 3.1e-55 219.5 239 57.3
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 1.2e-54 217.6 239 56.9
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 2.0e-54 216.9 287 47.7
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 2.6e-54 216.5 301 48.2
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 5.8e-54 215.3 289 50.9
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.3e-53 214.2 284 50.4
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 2.9e-53 213.0 284 50.0
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 2.9e-53 213.0 213 61.5
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.4e-52 210.7 209 61.7
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.4e-52 210.7 209 61.7
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 2.4e-52 209.9 288 49.0
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 3.2e-52 209.5 301 46.8
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 2.1e-51 206.8 208 59.1
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 4.6e-51 205.7 296 44.9
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 3.0e-50 203.0 297 45.5
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 3.9e-50 202.6 202 61.4
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 8.7e-50 201.4 288 46.5
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.9e-49 200.3 225 56.0
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 5.6e-49 198.7 289 47.1
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 7.6e-46 188.3 167 64.7
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 1.0e-45 188.0 296 44.6
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 1.0e-45 188.0 296 44.6
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 1.3e-45 187.6 296 44.6
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.7e-45 187.2 284 46.5
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 4.9e-45 185.7 296 44.3
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 4.9e-45 185.7 235 51.5
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.9e-44 183.7 279 47.0
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 5.5e-44 182.2 296 43.9
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 7.1e-44 181.8 263 48.3
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 9.3e-44 181.4 297 42.8
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 9.3e-44 181.4 292 44.5
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 1.6e-43 180.6 212 53.8
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 2.1e-43 180.3 289 41.9
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 6.0e-43 178.7 218 50.9
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 8.7e-42 174.9 300 43.7
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.9e-41 173.7 294 43.9
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 2.5e-41 173.3 300 41.3
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 5.7e-41 172.2 317 40.1
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 1.6e-40 170.6 318 39.6
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 8.2e-40 168.3 304 40.5
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 8.2e-40 168.3 270 44.4
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 1.4e-39 167.5 308 42.2
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 1.8e-39 167.2 294 41.2
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 3.1e-39 166.4 168 56.5
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 4.1e-39 166.0 278 43.5
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 9.0e-39 164.9 319 40.8
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 1.0e-37 161.4 237 47.7
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 2.9e-37 159.8 181 59.1
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 6.5e-37 158.7 255 42.4
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.1e-36 157.9 315 38.1
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.1e-36 157.9 237 45.1
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 1.9e-36 157.1 282 40.1
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 1.8e-34 150.6 288 40.6
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 3.9e-34 149.4 286 39.5
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 1.5e-33 147.5 262 40.8
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 1.5e-33 147.5 290 38.3
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 7.4e-33 145.2 353 34.0
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 4.8e-32 142.5 298 37.2
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 1.1e-31 141.4 175 48.0
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 4.1e-31 139.4 165 51.5
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 6.9e-31 138.7 260 39.2
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 5.9e-30 135.6 211 45.0
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 7.7e-30 135.2 381 32.8
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 3.8e-29 132.9 299 36.1
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 6.5e-29 132.1 297 35.4
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 8.5e-29 131.7 277 38.6
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 1.9e-28 130.6 301 34.6
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 2.1e-27 127.1 292 34.6
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 1.0e-26 124.8 322 35.1
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 7.4e-25 118.6 147 51.0
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 2.2e-24 117.1 141 51.8
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 1.4e-20 104.4 215 35.8
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 2.5e-20 103.6 85 69.4
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 1.2e-19 101.3 213 40.4
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 3.6e-19 99.8 314 30.9
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 6.1e-19 99.0 188 36.7
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 7.9e-19 98.6 213 39.0
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 7.9e-19 98.6 120 54.2
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 1.4e-18 97.8 298 31.5
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 2.3e-18 97.1 211 35.1
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 6.7e-18 95.5 213 35.7
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 9.7e-17 91.7 205 36.1
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 9.7e-17 91.7 293 30.7
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 1.3e-16 91.3 132 48.5
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 2.8e-16 90.1 202 36.6
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 1.0e-13 81.6 307 31.3
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 3.8e-13 79.7 92 46.7
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 2.7e-11 73.6 54 68.5
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 1.8e-10 70.9 69 49.3
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 3.7e-08 63.2 88 43.2
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 9.1e-07 58.5 71 46.5
Sed0023885 Sechium edule HOM05D005413 ORTHO05D006536 9.1e-07 58.5 80 45.0


User provided reference genes

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