Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 8.8e-110 400.2 190 100.0
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 6.8e-78 294.3 194 72.7
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 1.1e-70 270.4 193 69.9
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 8.9e-62 240.7 198 60.6
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 7.6e-61 237.7 194 59.8
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 6.0e-58 228.0 195 57.4
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 5.3e-54 214.9 188 55.9
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 2.2e-52 209.5 190 50.0
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 2.2e-52 209.5 190 54.7
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 2.9e-52 209.1 190 53.7
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 3.8e-52 208.8 190 53.2
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 6.4e-52 208.0 190 53.2
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 6.4e-52 208.0 190 51.6
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 8.4e-52 207.6 190 52.1
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 1.4e-51 206.8 189 50.8
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 1.4e-51 206.8 189 50.8
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 1.9e-51 206.5 190 51.1
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 1.9e-51 206.5 190 52.6
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.9e-51 206.5 190 52.6
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 2.4e-51 206.1 191 52.4
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 2.4e-51 206.1 190 51.6
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 3.2e-51 205.7 190 51.6
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 4.2e-51 205.3 190 53.2
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 4.2e-51 205.3 190 50.5
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 7.1e-51 204.5 190 50.5
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 7.1e-51 204.5 190 52.6
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 9.3e-51 204.1 189 51.3
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 9.3e-51 204.1 190 53.2
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 1.6e-50 203.4 190 51.1
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 2.1e-50 203.0 190 52.1
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 2.7e-50 202.6 160 53.8
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 4.6e-50 201.8 190 50.0
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 6.0e-50 201.4 160 53.8
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 7.9e-50 201.1 190 51.1
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 1.0e-49 200.7 160 53.1
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 1.0e-49 200.7 190 51.6
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 1.3e-49 200.3 190 47.9
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 2.3e-49 199.5 190 49.5
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 3.0e-49 199.1 190 50.0
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 3.9e-49 198.7 160 52.5
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 6.6e-49 198.0 160 53.1
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 6.6e-49 198.0 185 51.4
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 8.7e-49 197.6 190 50.0
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 8.7e-49 197.6 201 47.3
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 1.1e-48 197.2 190 48.4
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 1.5e-48 196.8 190 50.5
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 1.5e-48 196.8 190 49.5
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 1.9e-48 196.4 190 48.9
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 3.3e-48 195.7 160 51.9
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 3.3e-48 195.7 190 47.9
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 3.3e-48 195.7 160 51.9
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 3.3e-48 195.7 160 51.9
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 3.3e-48 195.7 160 51.9
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 4.3e-48 195.3 190 48.4
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 4.3e-48 195.3 190 47.9
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 7.3e-48 194.5 190 47.9
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 1.3e-47 193.7 190 50.0
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 1.3e-47 193.7 190 47.4
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 1.3e-47 193.7 190 48.9
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 1.6e-47 193.4 190 47.4
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 1.6e-47 193.4 190 46.8
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 2.1e-47 193.0 190 48.4
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 2.8e-47 192.6 190 46.8
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 3.6e-47 192.2 164 51.2
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 3.6e-47 192.2 194 49.5
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 4.8e-47 191.8 160 51.2
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 4.8e-47 191.8 190 46.3
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 4.8e-47 191.8 190 46.3
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 6.2e-47 191.4 190 46.8
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 6.2e-47 191.4 190 46.8
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 8.1e-47 191.0 190 48.4
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 1.1e-46 190.7 190 47.4
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 1.1e-46 190.7 163 50.3
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 1.1e-46 190.7 163 50.3
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 1.1e-46 190.7 163 50.3
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 1.4e-46 190.3 192 49.5
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 1.8e-46 189.9 190 46.8
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 3.1e-46 189.1 192 49.0
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 4.0e-46 188.7 191 49.2
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 5.3e-46 188.3 195 47.2
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 3.4e-45 185.7 164 50.0
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 3.4e-45 185.7 190 46.3
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 4.5e-45 185.3 164 50.0
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 4.5e-45 185.3 160 52.5
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 9.9e-45 184.1 190 48.4
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 9.9e-45 184.1 190 46.3
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 1.3e-44 183.7 190 46.3
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 4.9e-44 181.8 190 47.4
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 1.1e-43 180.6 190 46.8
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 1.9e-43 179.9 192 45.3
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 3.2e-43 179.1 217 42.9
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 3.2e-43 179.1 190 46.3
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 5.5e-43 178.3 190 45.8
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 7.1e-43 177.9 190 46.3
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 2.1e-42 176.4 194 46.4
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 2.1e-42 176.4 159 51.6
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 3.5e-42 175.6 227 42.3
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 1.0e-41 174.1 206 43.7
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 2.3e-41 172.9 190 43.7
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 3.0e-41 172.6 174 49.4
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 3.9e-41 172.2 223 40.4
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 5.1e-41 171.8 135 56.3
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 3.3e-40 169.1 237 38.8
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 5.6e-40 168.3 190 43.7
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 2.8e-39 166.0 190 43.7
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 2.4e-38 162.9 215 41.4
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 1.2e-37 160.6 200 46.5
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.5e-37 160.2 125 54.4
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 3.4e-37 159.1 190 41.6
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 7.6e-37 157.9 190 41.6
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 1.0e-36 157.5 190 41.6
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 1.3e-36 157.1 163 47.2
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 1.7e-36 156.8 212 39.2
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 2.9e-36 156.0 111 61.3
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 3.8e-36 155.6 191 42.9
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 3.8e-36 155.6 191 42.9
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 2.1e-34 149.8 191 41.9
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 3.0e-33 146.0 163 47.9
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 1.5e-32 143.7 190 42.1
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 2.8e-31 139.4 190 42.6
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 1.1e-30 137.5 104 54.8
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 1.4e-30 137.1 173 39.9
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 2.6e-29 132.9 162 41.4
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 4.5e-29 132.1 162 39.5
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 1.6e-26 123.6 127 49.6
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 2.1e-26 123.2 190 35.8
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 2.3e-25 119.8 190 36.3
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 1.1e-24 117.5 191 34.0
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 1.5e-24 117.1 191 33.5
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 1.8e-22 110.2 190 34.7
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 2.4e-22 109.8 91 51.6
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 1.0e-17 94.4 162 31.5
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 1.4e-17 94.0 138 36.2
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 8.8e-17 91.3 119 43.7
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 8.8e-17 91.3 162 31.5
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 2.5e-16 89.7 122 39.3
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 4.3e-16 89.0 184 32.6
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 7.4e-16 88.2 148 31.8
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 4.8e-15 85.5 98 44.9
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 8.2e-15 84.7 97 38.1
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 2.6e-13 79.7 158 30.4
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 7.7e-13 78.2 52 55.8
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 1.3e-12 77.4 107 43.0
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 1.9e-11 73.6 136 28.7
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 7.9e-10 68.2 67 47.8


User provided reference genes

Program Settings