Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 6.4e-114 414.1 205 100.0
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 6.2e-101 370.9 186 97.3
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 8.4e-90 334.0 201 79.1
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 1.9e-89 332.8 202 80.7
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 6.0e-88 327.8 194 80.4
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 4.6e-80 301.6 200 71.5
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 8.7e-79 297.4 196 71.9
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 1.5e-78 296.6 200 70.0
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 4.0e-76 288.5 202 67.8
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 6.9e-76 287.7 201 68.2
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 1.5e-75 286.6 201 68.2
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 2.0e-75 286.2 201 69.2
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 2.9e-74 282.3 201 68.2
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 2.9e-74 282.3 204 66.7
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 1.1e-73 280.4 201 65.7
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 2.4e-73 279.3 196 66.8
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 3.2e-73 278.9 196 66.3
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 4.2e-73 278.5 201 66.7
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 1.6e-72 276.6 196 66.8
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 3.5e-72 275.4 201 64.7
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 3.5e-72 275.4 201 66.2
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 7.9e-72 274.2 201 65.2
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 2.3e-71 272.7 201 65.2
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 3.9e-71 271.9 202 64.9
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 3.9e-71 271.9 196 65.8
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 8.7e-71 270.8 181 70.7
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 8.7e-71 270.8 203 67.0
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 2.5e-70 269.2 197 65.5
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 3.3e-70 268.9 200 64.0
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 5.6e-70 268.1 200 63.5
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 7.4e-70 267.7 199 62.3
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 1.3e-69 266.9 202 63.9
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 1.3e-69 266.9 202 63.9
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 1.3e-69 266.9 202 63.9
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 1.6e-69 266.5 202 63.9
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 2.1e-69 266.2 199 62.3
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 2.8e-69 265.8 200 62.0
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 3.7e-69 265.4 200 64.5
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 4.8e-69 265.0 200 62.0
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 6.2e-69 264.6 202 64.4
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 8.1e-69 264.2 196 64.3
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 1.4e-68 263.5 177 69.5
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 1.8e-68 263.1 202 64.4
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 5.3e-68 261.5 199 64.8
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 5.3e-68 261.5 199 64.8
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 5.3e-68 261.5 199 64.8
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 5.3e-68 261.5 202 61.9
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 1.2e-67 260.4 198 62.6
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 1.2e-67 260.4 202 62.4
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 2.6e-67 259.2 218 58.3
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 4.5e-67 258.5 202 62.4
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 5.8e-67 258.1 202 62.9
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 7.6e-67 257.7 202 62.4
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 1.3e-66 256.9 196 63.3
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 1.7e-66 256.5 199 63.8
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 1.7e-66 256.5 201 59.2
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 2.9e-66 255.8 202 62.4
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 4.9e-66 255.0 199 60.8
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 8.4e-66 254.2 202 61.9
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 8.4e-66 254.2 201 59.2
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.9e-65 253.1 202 61.4
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.9e-65 253.1 202 61.4
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 1.9e-65 253.1 202 61.4
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 3.2e-65 252.3 190 61.1
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 5.5e-65 251.5 196 62.2
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 7.1e-65 251.1 200 58.0
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 7.1e-65 251.1 196 61.7
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 9.3e-65 250.8 208 60.1
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 1.6e-64 250.0 207 58.9
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 1.6e-64 250.0 202 61.4
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.6e-64 250.0 199 61.3
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 2.1e-64 249.6 200 60.0
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 2.7e-64 249.2 196 61.2
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 3.5e-64 248.8 199 60.8
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 3.5e-64 248.8 202 57.9
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 3.5e-64 248.8 202 58.4
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 7.9e-64 247.7 197 61.4
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 7.9e-64 247.7 197 61.4
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 1.0e-63 247.3 196 60.7
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 5.1e-63 245.0 200 57.0
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 5.1e-63 245.0 202 58.9
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 6.7e-63 244.6 192 63.0
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 8.7e-63 244.2 200 61.0
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 1.1e-62 243.8 199 59.3
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 2.5e-62 242.7 200 61.0
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 4.3e-62 241.9 200 56.0
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 5.7e-62 241.5 204 57.8
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 1.3e-61 240.4 223 56.1
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 1.6e-61 240.0 200 56.0
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 1.6e-61 240.0 202 59.9
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 2.1e-61 239.6 202 59.4
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 8.2e-61 237.7 200 55.5
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 1.4e-60 236.9 200 55.5
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 1.4e-60 236.9 200 55.0
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 1.8e-60 236.5 200 55.5
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 3.1e-60 235.7 195 55.4
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 3.1e-60 235.7 190 57.4
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 4.1e-60 235.3 200 54.5
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 1.5e-59 233.4 195 55.4
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 2.0e-59 233.0 200 54.0
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 7.6e-59 231.1 178 64.0
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 2.9e-58 229.2 199 59.8
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 3.8e-58 228.8 147 73.5
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 6.5e-58 228.0 198 56.1
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 6.5e-58 228.0 199 53.8
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 1.1e-57 227.3 206 54.4
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 1.0e-55 220.7 205 53.7
PGR044G1343 Punica granatum HOM05D005838 ORTHO05D007177 2.8e-53 212.6 193 56.0
ECA240G3935 Erigeron canadensis HOM05D005838 ORTHO05D007177 1.1e-52 210.7 103 98.1
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 6.5e-50 201.4 165 55.8
Phvul.004G101800 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 1.9e-49 199.9 130 70.0
AagrBONN_evm.TU.Sc2ySwM_117.2288 Anthoceros agrestis HOM05D005838 ORTHO05D007177 9.7e-46 187.6 203 50.7
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 1.1e-41 174.1 133 68.4
Potri.008G056200 Populus trichocarpa HOM05D005838 ORTHO05D007177 3.3e-38 162.5 202 46.0
PRCOL_00001833 Prasinoderma coloniale HOM05D005838 ORTHO05D007177 6.1e-32 141.7 180 37.8
Cre01.g029100 Chlamydomonas reinhardtii HOM05D005838 ORTHO05D007177 3.7e-29 132.5 195 41.5
MCO01G144 Micromonas commoda HOM05D005838 ORTHO05D007177 7.0e-28 128.3 167 40.7
AagrBONN_evm.TU.Sc2ySwM_368.230 Anthoceros agrestis HOM05D005838 ORTHO05D007177 5.9e-27 125.2 114 50.0
Ah.04g162270 Amaranthus hybridus HOM05D005838 ORTHO05D007177 4.1e-20 102.4 63 66.7
ClCG10G009550 Citrullus lanatus HOM05D005838 ORTHO05D007177 4.1e-20 102.4 68 63.2
unitig_27.g25062 Utricularia gibba HOM05D005838 ORTHO05D007177 6.5e-18 95.1 105 44.8
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 5.5e-17 92.0 116 41.4
Oeu048244.1 Olea europaea HOM05D005838 ORTHO05D007177 3.7e-13 79.3 50 62.0
C01p52640 Brassica napus HOM05D005838 ORTHO05D007177 1.8e-12 77.0 59 55.9
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 1.8e-12 77.0 87 48.3
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 1.2e-11 74.3 46 65.2
BolC1t05204H Brassica oleracea HOM05D005838 ORTHO05D007177 5.9e-11 72.0 55 56.4
Psat7g263960 Pisum sativum HOM05D005838 ORTHO05D007177 7.3e-09 65.1 61 57.4


User provided reference genes

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