Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G5048 Erigeron canadensis HOM05D000905 ORTHO05D000749 4.9e-38 160.6 79 100.0
ECA236G3325 Erigeron canadensis HOM05D000905 ORTHO05D000749 1.8e-24 115.5 62 90.3
HanXRQChr11g0336261 Helianthus annuus HOM05D000905 ORTHO05D000749 3.2e-21 104.8 62 80.6
Lsat_1_v5_gn_7_109061 Lactuca sativa HOM05D000905 ORTHO05D000749 2.1e-20 102.1 62 79.0
DCAR_022552 Daucus carota HOM05D000905 ORTHO05D000749 9.6e-18 93.2 62 71.0
GSVIVG01037609001 Vitis vinifera HOM05D000905 ORTHO05D000749 2.1e-17 92.0 62 67.7
COL.COLO4_09633 Corchorus olitorius HOM05D000905 ORTHO05D000749 1.1e-16 89.7 62 64.5
ECA246G4761 Erigeron canadensis HOM05D000905 ORTHO05D000749 1.8e-16 89.0 61 70.5
Gohir.D13G143800 Gossypium hirsutum HOM05D000905 ORTHO05D000749 1.8e-16 89.0 62 64.5
Gorai.013G160800 Gossypium raimondii HOM05D000905 ORTHO05D000749 1.8e-16 89.0 62 64.5
TAR627G0016 Trochodendron aralioides HOM05D000905 ORTHO05D000749 1.8e-16 89.0 62 66.1
TAR627G0121 Trochodendron aralioides HOM05D000905 ORTHO05D000749 1.8e-16 89.0 62 66.1
Cc05_g13520 Coffea canephora HOM05D000905 ORTHO05D000749 2.4e-16 88.6 60 71.7
Nitab4.5_0005048g0060 Nicotiana tabacum HOM05D000905 ORTHO05D000749 2.4e-16 88.6 62 69.4
Thecc.07G043700 Theobroma cacao HOM05D000905 ORTHO05D000749 5.3e-16 87.4 62 62.9
CAN.G1781.8 Capsicum annuum HOM05D000905 ORTHO05D000749 6.9e-16 87.0 62 66.1
Gorai.002G086800 Gossypium raimondii HOM05D000905 ORTHO05D000749 1.2e-15 86.3 65 60.0
PGSC0003DMG400014424 Solanum tuberosum HOM05D000905 ORTHO05D000749 1.2e-15 86.3 62 64.5
Nitab4.5_0001393g0200 Nicotiana tabacum HOM05D000905 ORTHO05D000749 1.5e-15 85.9 62 67.7
Gohir.A06G077950 Gossypium hirsutum HOM05D000905 ORTHO05D000749 2.0e-15 85.5 62 62.9
Gohir.A13G139000 Gossypium hirsutum HOM05D000905 ORTHO05D000749 2.0e-15 85.5 62 62.9
Gohir.D03G108700 Gossypium hirsutum HOM05D000905 ORTHO05D000749 2.0e-15 85.5 62 62.9
Lsat_1_v5_gn_5_5161 Lactuca sativa HOM05D000905 ORTHO05D000749 2.0e-15 85.5 61 65.6
TWI38G0391 Tripterygium wilfordii HOM05D000905 ORTHO05D000749 2.0e-15 85.5 62 64.5
Hma1.2p1_0938F.1_g239210 Hydrangea macrophylla HOM05D000905 ORTHO05D000749 2.6e-15 85.1 62 66.1
QL08p011855 Quercus lobata HOM05D000905 ORTHO05D000749 2.6e-15 85.1 62 64.5
Ciclev10007404m.g Citrus clementina HOM05D000905 ORTHO05D000749 3.4e-15 84.7 62 61.3
Gohir.D01G065100 Gossypium hirsutum HOM05D000905 ORTHO05D000749 3.4e-15 84.7 62 61.3
Sabra16G0286000 Salix brachista HOM05D000905 ORTHO05D000749 3.4e-15 84.7 62 62.9
Haze_09648 Corylus avellana HOM05D000905 ORTHO05D000749 4.5e-15 84.3 62 62.9
CsaV3_3G023290 Cucumis sativus L. HOM05D000905 ORTHO05D000749 4.5e-15 84.3 61 63.9
Rhsim04G0002200 Rhododendron simsii HOM05D000905 ORTHO05D000749 4.5e-15 84.3 62 64.5
RhsimUnG0252200 Rhododendron simsii HOM05D000905 ORTHO05D000749 4.5e-15 84.3 62 64.5
TWI39G0932 Tripterygium wilfordii HOM05D000905 ORTHO05D000749 4.5e-15 84.3 59 66.1
MELO3C018075.2 Cucumis melo HOM05D000905 ORTHO05D000749 5.8e-15 84.0 61 63.9
Duzib268G1675 Durio zibethinus HOM05D000905 ORTHO05D000749 5.8e-15 84.0 62 61.3
HanXRQChr08g0233981 Helianthus annuus HOM05D000905 ORTHO05D000749 7.6e-15 83.6 61 62.3
Lj1A869T79 Lonicera japonica HOM05D000905 ORTHO05D000749 7.6e-15 83.6 60 66.7
Potri.011G136700 Populus trichocarpa HOM05D000905 ORTHO05D000749 7.6e-15 83.6 62 59.7
Solyc10g006350.3 Solanum lycopersicum HOM05D000905 ORTHO05D000749 7.6e-15 83.6 62 64.5
Gohir.A04G018700 Gossypium hirsutum HOM05D000905 ORTHO05D000749 9.9e-15 83.2 59 62.7
Gohir.D05G367300 Gossypium hirsutum HOM05D000905 ORTHO05D000749 9.9e-15 83.2 62 61.3
HanXRQChr08g0217991 Helianthus annuus HOM05D000905 ORTHO05D000749 9.9e-15 83.2 60 73.3
Potri.001G421200 Populus trichocarpa HOM05D000905 ORTHO05D000749 9.9e-15 83.2 62 61.3
Sopen10g002300 Solanum pennellii HOM05D000905 ORTHO05D000749 9.9e-15 83.2 62 62.9
TAR629G1358 Trochodendron aralioides HOM05D000905 ORTHO05D000749 9.9e-15 83.2 62 61.3
Cfa020384 Carpinus fangiana HOM05D000905 ORTHO05D000749 1.3e-14 82.8 62 61.3
Thhalv10024370m.g Eutrema salsugineum HOM05D000905 ORTHO05D000749 1.3e-14 82.8 62 56.5
Nn1g03581 Nelumbo nucifera HOM05D000905 ORTHO05D000749 1.3e-14 82.8 61 60.7
Sabra11G0122700 Salix brachista HOM05D000905 ORTHO05D000749 1.3e-14 82.8 74 52.7
CiPaw.12G128100 Carya illinoinensis HOM05D000905 ORTHO05D000749 1.7e-14 82.4 62 64.5
ClCG05G014420 Citrullus lanatus HOM05D000905 ORTHO05D000749 1.7e-14 82.4 61 62.3
Gohir.A01G078000 Gossypium hirsutum HOM05D000905 ORTHO05D000749 1.7e-14 82.4 62 59.7
Oeu062601.1 Olea europaea HOM05D000905 ORTHO05D000749 1.7e-14 82.4 62 62.9
AT4G27060 Arabidopsis thaliana HOM05D000905 ORTHO05D000749 2.2e-14 82.0 62 56.5
CARHR234710 Cardamine hirsuta HOM05D000905 ORTHO05D000749 2.2e-14 82.0 62 56.5
Peaxi162Scf00387g00313 Petunia axillaris HOM05D000905 ORTHO05D000749 2.2e-14 82.0 60 65.0
Cpa.g.sc97.34 Carica papaya HOM05D000905 ORTHO05D000749 2.9e-14 81.6 62 61.3
Duzib170G0897 Durio zibethinus HOM05D000905 ORTHO05D000749 2.9e-14 81.6 62 62.9
Sp7g25030 Schrenkiella parvula HOM05D000905 ORTHO05D000749 2.9e-14 81.6 62 56.5
Gorai.009G434900 Gossypium raimondii HOM05D000905 ORTHO05D000749 3.8e-14 81.3 62 59.7
Sed0024641 Sechium edule HOM05D000905 ORTHO05D000749 3.8e-14 81.3 61 65.6
Hund02096 Selenicereus undatus HOM05D000905 ORTHO05D000749 3.8e-14 81.3 59 67.8
AT1G50890 Arabidopsis thaliana HOM05D000905 ORTHO05D000749 4.9e-14 80.9 59 57.6
CANSAT11G2225 Cannabis sativa HOM05D000905 ORTHO05D000749 4.9e-14 80.9 62 61.3
PGR083G2090 Punica granatum HOM05D000905 ORTHO05D000749 4.9e-14 80.9 62 59.7
Atru.chr2.3279 Acer truncatum HOM05D000905 ORTHO05D000749 6.4e-14 80.5 62 56.5
AL1G58620 Arabidopsis lyrata HOM05D000905 ORTHO05D000749 6.4e-14 80.5 59 61.0
AL7G25740 Arabidopsis lyrata HOM05D000905 ORTHO05D000749 6.4e-14 80.5 62 54.8
BcaC09g50621 Brassica carinata HOM05D000905 ORTHO05D000749 6.4e-14 80.5 62 53.2
C01p23210 Brassica napus HOM05D000905 ORTHO05D000749 6.4e-14 80.5 62 53.2
BolC1t02254H Brassica oleracea HOM05D000905 ORTHO05D000749 6.4e-14 80.5 62 53.2
CiPaw.11G187300 Carya illinoinensis HOM05D000905 ORTHO05D000749 8.4e-14 80.1 59 61.0
Migut.H01841 Erythranthe guttata HOM05D000905 ORTHO05D000749 8.4e-14 80.1 57 64.9
Nn1g07106 Nelumbo nucifera HOM05D000905 ORTHO05D000749 8.4e-14 80.1 62 58.1
Actinidia35329 Actinidia chinensis HOM05D000905 ORTHO05D000749 1.1e-13 79.7 62 61.3
Sp1g37630 Schrenkiella parvula HOM05D000905 ORTHO05D000749 1.1e-13 79.7 59 59.3
Carub.0007s1379 Capsella rubella HOM05D000905 ORTHO05D000749 1.4e-13 79.3 62 53.2
Glyma.08G313200 Glycine max HOM05D000905 ORTHO05D000749 1.4e-13 79.3 62 62.9
SGA_v2.0_scaffold8G04302 Striga asiatica HOM05D000905 ORTHO05D000749 1.4e-13 79.3 62 62.9
Actinidia10722 Actinidia chinensis HOM05D000905 ORTHO05D000749 1.9e-13 79.0 62 62.9
A01p18210 Brassica napus HOM05D000905 ORTHO05D000749 1.9e-13 79.0 62 51.6
A05p19900 Brassica napus HOM05D000905 ORTHO05D000749 1.9e-13 79.0 60 60.0
BraA01t01776Z Brassica rapa HOM05D000905 ORTHO05D000749 1.9e-13 79.0 62 51.6
Eucgr.F00965 Eucalyptus grandis HOM05D000905 ORTHO05D000749 1.9e-13 79.0 57 64.9
BcaB02g11191 Brassica carinata HOM05D000905 ORTHO05D000749 2.4e-13 78.6 60 60.0
Thhalv10011243m.g Eutrema salsugineum HOM05D000905 ORTHO05D000749 2.4e-13 78.6 59 61.0
Manes.03G126600 Manihot esculenta HOM05D000905 ORTHO05D000749 2.4e-13 78.6 62 58.1
Oeu042921.1 Olea europaea HOM05D000905 ORTHO05D000749 2.4e-13 78.6 61 62.3
Aqoxy4G02530_Aqoxy4G02531 Aquilegia oxysepala HOM05D000905 ORTHO05D000749 3.2e-13 78.2 62 58.1
Peaxi162Scf00450g00847 Petunia axillaris HOM05D000905 ORTHO05D000749 3.2e-13 78.2 61 62.3
EL10Ac4g07897 Beta vulgaris HOM05D000905 ORTHO05D000749 4.2e-13 77.8 59 61.0
BraA05t20895Z Brassica rapa HOM05D000905 ORTHO05D000749 4.2e-13 77.8 60 58.3
Dinv40736 Davidia involucrata HOM05D000905 ORTHO05D000749 4.2e-13 77.8 61 60.7
Prupe.4G209400 Prunus persica HOM05D000905 ORTHO05D000749 4.2e-13 77.8 62 56.5
CARHR040930 Cardamine hirsuta HOM05D000905 ORTHO05D000749 5.4e-13 77.4 59 59.3
vmacro09734 Vaccinium macrocarpon HOM05D000905 ORTHO05D000749 5.4e-13 77.4 62 61.3
Aa31LG10G3310 Aethionema arabicum HOM05D000905 ORTHO05D000749 7.1e-13 77.0 59 55.9
CSS0003768 Camellia sinensis var. sinensis HOM05D000905 ORTHO05D000749 7.1e-13 77.0 62 59.7
Glyma.18G101400 Glycine max HOM05D000905 ORTHO05D000749 7.1e-13 77.0 62 61.3
BcaC05g27389 Brassica carinata HOM05D000905 ORTHO05D000749 9.3e-13 76.6 60 58.3
C05p33240 Brassica napus HOM05D000905 ORTHO05D000749 9.3e-13 76.6 60 58.3
BolC5t32049H Brassica oleracea HOM05D000905 ORTHO05D000749 9.3e-13 76.6 60 58.3
FAN11G2009 Fragaria x ananassa HOM05D000905 ORTHO05D000749 9.3e-13 76.6 62 58.1
Manes.15G073600 Manihot esculenta HOM05D000905 ORTHO05D000749 1.2e-12 76.3 57 59.6
RcHm_v2.0_Chr5g0038291 Rosa chinensis HOM05D000905 ORTHO05D000749 1.2e-12 76.3 62 58.1
SHI31840 Sapria himalayana HOM05D000905 ORTHO05D000749 1.2e-12 76.3 59 54.2
arahy.Tifrunner.gnm1.ann1.FI466Z Arachis hypogaea HOM05D000905 ORTHO05D000749 1.6e-12 75.9 62 59.7
Ah.04g165690 Amaranthus hybridus HOM05D000905 ORTHO05D000749 2.1e-12 75.5 59 57.6
Ca_14811_v3 Cicer arietinum L. HOM05D000905 ORTHO05D000749 2.1e-12 75.5 62 61.3
FvH4_3g22240 Fragaria vesca HOM05D000905 ORTHO05D000749 2.1e-12 75.5 60 60.0
MSTRG.14429 Avicennia marina HOM05D000905 ORTHO05D000749 2.7e-12 75.1 62 58.1
Oeu032449.1 Olea europaea HOM05D000905 ORTHO05D000749 2.7e-12 75.1 62 59.7
Phvul.006G039200 Phaseolus vulgaris HOM05D000905 ORTHO05D000749 2.7e-12 75.1 62 59.7
MBI02_g28335_MAGBIO Magnolia biondii HOM05D000905 ORTHO05D000749 3.5e-12 74.7 62 54.8
Sc03g0008750 Simmondsia chinensis HOM05D000905 ORTHO05D000749 3.5e-12 74.7 57 61.4
VMungo0540G1730 Vigna mungo HOM05D000905 ORTHO05D000749 3.5e-12 74.7 62 59.7
AUR62015708 Chenopodium quinoa HOM05D000905 ORTHO05D000749 4.6e-12 74.3 59 57.6
AUR62020498 Chenopodium quinoa HOM05D000905 ORTHO05D000749 4.6e-12 74.3 59 57.6
arahy.Tifrunner.gnm1.ann1.83EP2I Arachis hypogaea HOM05D000905 ORTHO05D000749 6.0e-12 73.9 62 58.1
arahy.Tifrunner.gnm1.ann1.IS6ADN Arachis hypogaea HOM05D000905 ORTHO05D000749 6.0e-12 73.9 62 58.1
FAN16G1780 Fragaria x ananassa HOM05D000905 ORTHO05D000749 6.0e-12 73.9 62 56.5
FAN21G4003 Fragaria x ananassa HOM05D000905 ORTHO05D000749 6.0e-12 73.9 62 56.5
THA.LOC104817657 Tarenaya hassleriana HOM05D000905 ORTHO05D000749 1.0e-11 73.2 62 53.2
Lj6g0022720 Lotus japonicus HOM05D000905 ORTHO05D000749 1.3e-11 72.8 62 56.5
Carub.0001s3984 Capsella rubella HOM05D000905 ORTHO05D000749 2.3e-11 72.0 59 54.2
unitig_8.g4577 Utricularia gibba HOM05D000905 ORTHO05D000749 2.3e-11 72.0 58 55.2
FAN25G2510 Fragaria x ananassa HOM05D000905 ORTHO05D000749 3.0e-11 71.6 62 54.8
Lalb_Chr20g0113961 Lupinus albus HOM05D000905 ORTHO05D000749 3.9e-11 71.2 57 61.4
MD11G1222000 Malus domestica HOM05D000905 ORTHO05D000749 1.1e-10 69.7 62 51.6
SGA_v2.0_scaffold9G05062 Striga asiatica HOM05D000905 ORTHO05D000749 1.1e-10 69.7 62 54.8
Psat5g183280 Pisum sativum HOM05D000905 ORTHO05D000749 1.5e-10 69.3 62 54.8
THA.LOC104817878 Tarenaya hassleriana HOM05D000905 ORTHO05D000749 1.5e-10 69.3 61 50.8
Medtr3g050060 Medicago truncatula HOM05D000905 ORTHO05D000749 3.3e-10 68.2 62 53.2
TPR.G16589 Trifolium pratense HOM05D000905 ORTHO05D000749 3.3e-10 68.2 62 54.8
CDE12G0721 Ceratophyllum demersum HOM05D000905 ORTHO05D000749 5.6e-10 67.4 62 54.8
MD03G1206600 Malus domestica HOM05D000905 ORTHO05D000749 7.4e-10 67.0 62 50.0
ATR0752G147 Amborella trichopoda HOM05D000905 ORTHO05D000749 9.6e-10 66.6 62 51.6
Aa31LG5G10340 Aethionema arabicum HOM05D000905 ORTHO05D000749 1.3e-09 66.2 62 41.9
HPP92_017606 Vanilla planifolia HOM05D000905 ORTHO05D000749 1.3e-09 66.2 62 54.8
CDE05G1758 Ceratophyllum demersum HOM05D000905 ORTHO05D000749 2.8e-09 65.1 62 51.6
PSO541G6243 Papaver somniferum HOM05D000905 ORTHO05D000749 2.8e-09 65.1 62 48.4
PSO675G6898 Papaver somniferum HOM05D000905 ORTHO05D000749 2.8e-09 65.1 62 48.4
CDE05G2004 Ceratophyllum demersum HOM05D000905 ORTHO05D000749 4.8e-09 64.3 62 50.0
Sed0008924 Sechium edule HOM05D000905 ORTHO05D000749 4.8e-09 64.3 57 56.1
Zm00001eb106100 Zea mays HOM05D000905 ORTHO05D000749 1.1e-08 63.2 60 46.7
Aqoxy1G03293 Aquilegia oxysepala HOM05D000905 ORTHO05D000749 1.4e-08 62.8 59 52.5
PSO832G2245 Papaver somniferum HOM05D000905 ORTHO05D000749 1.8e-08 62.4 55 49.1
SEGI_21255 Sequoiadendron giganteum HOM05D000905 ORTHO05D000749 2.4e-08 62.0 59 52.5
Os07g0520400 Oryza sativa ssp. japonica HOM05D000905 ORTHO05D000749 1.2e-07 59.7 60 45.0
PSO210G2593 Papaver somniferum HOM05D000905 ORTHO05D000749 2.6e-07 58.5 55 47.3
Zm00001eb322820 Zea mays HOM05D000905 ORTHO05D000749 2.6e-07 58.5 60 45.0
Gohir.D07G224950 Gossypium hirsutum HOM05D000905 ORTHO05D000749 3.8e-06 54.7 38 60.5


User provided reference genes

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