Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 3.1e-59 231.5 110 100.0
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 5.6e-40 167.5 93 87.1
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 3.5e-34 148.3 109 69.7
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 1.6e-31 139.4 127 55.9
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 2.8e-31 138.7 126 55.6
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 3.1e-30 135.2 131 51.9
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 4.0e-30 134.8 125 56.8
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 2.0e-29 132.5 133 55.6
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 2.0e-29 132.5 116 58.6
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 4.4e-29 131.3 120 56.7
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 9.9e-29 130.2 131 51.1
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 2.2e-28 129.0 125 54.4
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 3.7e-28 128.3 130 52.3
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 3.7e-28 128.3 129 50.4
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 4.9e-28 127.9 125 55.2
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 8.3e-28 127.1 129 48.8
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 8.3e-28 127.1 126 50.8
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 1.4e-27 126.3 125 50.4
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 1.4e-27 126.3 145 50.3
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 3.2e-27 125.2 126 52.4
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 5.4e-27 124.4 115 52.2
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 7.1e-27 124.0 124 52.4
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 1.2e-26 123.2 130 51.5
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 1.2e-26 123.2 109 57.8
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 2.1e-26 122.5 117 56.4
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 2.1e-26 122.5 131 51.1
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 2.7e-26 122.1 132 50.8
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 3.5e-26 121.7 116 51.7
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 4.6e-26 121.3 134 50.7
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 6.0e-26 120.9 124 53.2
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 7.8e-26 120.6 139 53.2
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 7.8e-26 120.6 121 53.7
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 7.8e-26 120.6 127 46.5
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 1.3e-25 119.8 125 48.0
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 1.3e-25 119.8 121 52.1
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 1.3e-25 119.8 126 52.4
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 2.3e-25 119.0 123 49.6
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 2.3e-25 119.0 138 46.4
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 3.0e-25 118.6 107 57.0
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 3.0e-25 118.6 129 48.1
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 3.9e-25 118.2 139 48.9
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 8.6e-25 117.1 108 52.8
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 8.6e-25 117.1 130 53.1
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 1.1e-24 116.7 101 52.5
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 1.1e-24 116.7 126 51.6
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 1.5e-24 116.3 129 50.4
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 1.9e-24 115.9 130 50.0
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 3.3e-24 115.2 130 52.3
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 3.3e-24 115.2 132 47.0
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 4.3e-24 114.8 123 50.4
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 5.6e-24 114.4 123 48.8
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 5.6e-24 114.4 131 48.1
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 7.3e-24 114.0 125 50.4
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 7.3e-24 114.0 123 51.2
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 7.3e-24 114.0 132 50.8
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 7.3e-24 114.0 135 48.9
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 9.5e-24 113.6 128 47.7
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 1.2e-23 113.2 121 48.8
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 1.2e-23 113.2 142 50.0
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 1.6e-23 112.8 123 49.6
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 1.6e-23 112.8 144 50.0
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 1.6e-23 112.8 123 51.2
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 1.6e-23 112.8 132 47.7
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 2.1e-23 112.5 131 49.6
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 2.1e-23 112.5 131 48.1
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 3.6e-23 111.7 110 50.9
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 3.6e-23 111.7 115 49.6
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 4.7e-23 111.3 137 48.9
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 6.2e-23 110.9 131 47.3
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 6.2e-23 110.9 131 47.3
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 6.2e-23 110.9 131 47.3
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 6.2e-23 110.9 116 50.9
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 6.2e-23 110.9 144 49.3
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 8.1e-23 110.5 139 50.4
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 8.1e-23 110.5 131 45.8
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 8.1e-23 110.5 173 36.4
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 8.1e-23 110.5 173 36.4
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 8.1e-23 110.5 134 46.3
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 1.1e-22 110.2 117 47.0
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 1.1e-22 110.2 125 50.4
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 1.1e-22 110.2 112 51.8
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 1.4e-22 109.8 131 46.6
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 1.4e-22 109.8 133 47.4
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 1.4e-22 109.8 109 50.5
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 1.8e-22 109.4 123 48.0
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 1.8e-22 109.4 126 45.2
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 3.1e-22 108.6 125 51.2
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 3.1e-22 108.6 133 47.4
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 4.0e-22 108.2 124 48.4
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 4.0e-22 108.2 108 50.0
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 4.0e-22 108.2 122 46.7
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 4.0e-22 108.2 140 42.1
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 5.2e-22 107.8 122 45.1
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 5.2e-22 107.8 101 54.5
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 5.2e-22 107.8 152 41.4
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 5.2e-22 107.8 129 48.8
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 6.8e-22 107.5 131 47.3
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 6.8e-22 107.5 132 46.2
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 6.8e-22 107.5 140 42.1
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 8.9e-22 107.1 134 47.0
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 8.9e-22 107.1 138 44.9
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 8.9e-22 107.1 118 49.2
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 1.2e-21 106.7 131 46.6
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 2.0e-21 105.9 116 49.1
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 2.0e-21 105.9 133 45.1
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 2.0e-21 105.9 124 48.4
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 2.0e-21 105.9 126 44.4
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 2.6e-21 105.5 132 45.5
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 2.6e-21 105.5 137 44.5
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 2.6e-21 105.5 146 43.8
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 3.4e-21 105.1 111 51.4
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 3.4e-21 105.1 131 45.8
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 5.8e-21 104.4 113 49.6
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 7.6e-21 104.0 105 52.4
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 7.6e-21 104.0 103 52.4
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 9.9e-21 103.6 110 50.0
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 1.3e-20 103.2 116 48.3
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 2.9e-20 102.1 134 44.8
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 3.8e-20 101.7 111 50.5
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 3.8e-20 101.7 106 52.8
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 4.9e-20 101.3 106 51.9
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 4.9e-20 101.3 113 47.8
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 6.4e-20 100.9 133 44.4
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 6.4e-20 100.9 121 49.6
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 1.1e-19 100.1 110 52.7
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 1.9e-19 99.4 106 49.1
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 2.4e-19 99.0 129 43.4
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 4.1e-19 98.2 131 44.3
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 4.1e-19 98.2 131 44.3
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 5.4e-19 97.8 132 43.9
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 7.8e-18 94.0 157 40.1
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 1.7e-17 92.8 69 59.4
Ah.09g229970 Amaranthus hybridus HOM05D004757 ORTHO05D005743 3.0e-17 92.0 142 38.7
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 3.0e-17 92.0 157 39.5
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 3.0e-17 92.0 157 39.5
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 3.0e-17 92.0 88 50.0
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 3.9e-17 91.7 64 57.8
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 1.1e-16 90.1 123 42.3
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 5.6e-16 87.8 71 54.9
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 1.6e-15 86.3 115 43.5
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 1.6e-15 86.3 65 58.5
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 1.1e-14 83.6 75 54.7
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 1.2e-13 80.1 166 36.7
Zm00001eb420280 Zea mays HOM05D004757 ORTHO05D005743 3.4e-13 78.6 69 50.7
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 4.4e-13 78.2 156 37.2
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 5.8e-13 77.8 159 35.8
Zm00001eb087060 Zea mays HOM05D004757 ORTHO05D005743 8.4e-12 73.9 82 41.5
Peaxi162Scf00200g00182 Petunia axillaris HOM05D004757 ORTHO05D005743 2.1e-10 69.3 80 45.0
Peaxi162Scf00627g00011 Petunia axillaris HOM05D004757 ORTHO05D005743 5.6e-08 61.2 62 48.4
Dinv41223 Davidia involucrata HOM05D004757 ORTHO05D005743 1.3e-07 60.1 98 41.8
AUR62033229 Chenopodium quinoa HOM05D004757 ORTHO05D005743 1.6e-07 59.7 79 41.8
AUR62021312 Chenopodium quinoa HOM05D004757 ORTHO05D005743 6.2e-07 57.8 79 40.5


User provided reference genes

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