Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G4993 Erigeron canadensis HOM05D003356 ORTHO05D004362 1.7e-232 808.9 391 100.0
Lsat_1_v5_gn_7_18881 Lactuca sativa HOM05D003356 ORTHO05D004362 1.4e-157 560.1 301 87.7
HanXRQChr15g0482461 Helianthus annuus HOM05D003356 ORTHO05D004362 4.1e-154 548.5 301 86.0
CSS0019237 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 5.6e-119 431.8 301 67.8
DCAR_004079 Daucus carota HOM05D003356 ORTHO05D004362 3.6e-118 429.1 302 66.9
TAR626G0399 Trochodendron aralioides HOM05D003356 ORTHO05D004362 2.4e-117 426.4 301 65.1
Gohir.D11G296752 Gossypium hirsutum HOM05D003356 ORTHO05D004362 6.9e-117 424.9 301 64.8
Gorai.007G321200 Gossypium raimondii HOM05D003356 ORTHO05D004362 6.9e-117 424.9 301 64.8
CsaV3_4G033780 Cucumis sativus L. HOM05D003356 ORTHO05D004362 9.0e-117 424.5 301 64.8
Glyma.12G150800 Glycine max HOM05D003356 ORTHO05D004362 9.0e-117 424.5 301 66.8
Cfa020557 Carpinus fangiana HOM05D003356 ORTHO05D004362 1.5e-116 423.7 301 64.8
Gohir.A11G283100 Gossypium hirsutum HOM05D003356 ORTHO05D004362 1.5e-116 423.7 301 64.8
Glyma.06G246600 Glycine max HOM05D003356 ORTHO05D004362 4.5e-116 422.2 301 66.1
TWI39G1274 Tripterygium wilfordii HOM05D003356 ORTHO05D004362 5.8e-116 421.8 301 65.1
CANSAT56G0567 Cannabis sativa HOM05D003356 ORTHO05D004362 7.6e-116 421.4 301 63.8
Actinidia01887 Actinidia chinensis HOM05D003356 ORTHO05D004362 2.2e-115 419.9 301 65.8
QL08p020494 Quercus lobata HOM05D003356 ORTHO05D004362 2.2e-115 419.9 301 64.1
Zm00001eb198690 Zea mays HOM05D003356 ORTHO05D004362 2.2e-115 419.9 298 64.1
VMungo1127G2063 Vigna mungo HOM05D003356 ORTHO05D004362 2.9e-115 419.5 301 66.8
PGR083G2041 Punica granatum HOM05D003356 ORTHO05D004362 3.8e-115 419.1 301 63.5
Dinv04314 Davidia involucrata HOM05D003356 ORTHO05D004362 6.4e-115 418.3 301 63.8
FvH4_3g20420 Fragaria vesca HOM05D003356 ORTHO05D004362 8.4e-115 417.9 301 63.8
Rhsim04G0020100 Rhododendron simsii HOM05D003356 ORTHO05D004362 1.4e-114 417.2 301 64.1
GSVIVG01014366001 Vitis vinifera HOM05D003356 ORTHO05D004362 1.4e-114 417.2 301 64.1
arahy.Tifrunner.gnm1.ann1.1CAS5W Arachis hypogaea HOM05D003356 ORTHO05D004362 1.9e-114 416.8 301 64.5
Lalb_Chr01g0006491 Lupinus albus HOM05D003356 ORTHO05D004362 1.9e-114 416.8 301 65.1
Phvul.011G150000 Phaseolus vulgaris HOM05D003356 ORTHO05D004362 1.9e-114 416.8 301 65.8
Thecc.07G080500 Theobroma cacao HOM05D003356 ORTHO05D004362 2.4e-114 416.4 301 62.8
Hma1.2p1_0881F.1_g232075 Hydrangea macrophylla HOM05D003356 ORTHO05D004362 4.2e-114 415.6 301 64.8
Sed0005873 Sechium edule HOM05D003356 ORTHO05D004362 4.2e-114 415.6 301 62.8
Atru.chr2.2711 Acer truncatum HOM05D003356 ORTHO05D004362 7.1e-114 414.8 302 63.6
Prupe.4G183900 Prunus persica HOM05D003356 ORTHO05D004362 9.3e-114 414.5 301 64.5
Eucgr.F01103 Eucalyptus grandis HOM05D003356 ORTHO05D004362 1.2e-113 414.1 301 63.1
Medtr8g059125 Medicago truncatula HOM05D003356 ORTHO05D004362 1.2e-113 414.1 301 64.5
TAR624G0482 Trochodendron aralioides HOM05D003356 ORTHO05D004362 1.2e-113 414.1 301 64.1
Psat4g135280 Pisum sativum HOM05D003356 ORTHO05D004362 1.6e-113 413.7 301 65.1
Lj3g0021569 Lotus japonicus HOM05D003356 ORTHO05D004362 3.5e-113 412.5 302 64.9
MD11G1246200 Malus domestica HOM05D003356 ORTHO05D004362 4.6e-113 412.1 301 62.5
Manes.03G112000 Manihot esculenta HOM05D003356 ORTHO05D004362 4.6e-113 412.1 301 62.5
COL.COLO4_09421 Corchorus olitorius HOM05D003356 ORTHO05D004362 6.0e-113 411.8 298 63.1
Glyma.13G278300 Glycine max HOM05D003356 ORTHO05D004362 7.9e-113 411.4 301 64.1
MD03G1225500 Malus domestica HOM05D003356 ORTHO05D004362 7.9e-113 411.4 301 62.5
Cpa.g.sc80.47 Carica papaya HOM05D003356 ORTHO05D004362 1.0e-112 411.0 301 63.1
SGA_v2.0_scaffold73G24287 Striga asiatica HOM05D003356 ORTHO05D004362 1.0e-112 411.0 301 61.8
Potri.011G121100 Populus trichocarpa HOM05D003356 ORTHO05D004362 1.3e-112 410.6 301 61.8
TPR.G31511 Trifolium pratense HOM05D003356 ORTHO05D004362 1.3e-112 410.6 301 64.1
FAN16G2459 Fragaria x ananassa HOM05D003356 ORTHO05D004362 2.3e-112 409.8 308 62.0
RcHm_v2.0_Chr5g0034311 Rosa chinensis HOM05D003356 ORTHO05D004362 2.3e-112 409.8 301 62.1
SalBow2G3561 Salvia bowleyana HOM05D003356 ORTHO05D004362 2.3e-112 409.8 301 61.5
EL10Ac4g08143 Beta vulgaris HOM05D003356 ORTHO05D004362 3.0e-112 409.5 298 63.1
Hma1.2p1_0148F.1_g066130 Hydrangea macrophylla HOM05D003356 ORTHO05D004362 3.0e-112 409.5 301 62.1
THA.LOC104818067 Tarenaya hassleriana HOM05D003356 ORTHO05D004362 3.9e-112 409.1 301 63.1
VMungo1080G1275 Vigna mungo HOM05D003356 ORTHO05D004362 3.9e-112 409.1 303 62.7
CiPaw.11G172300 Carya illinoinensis HOM05D003356 ORTHO05D004362 5.1e-112 408.7 301 62.5
Hund22933 Selenicereus undatus HOM05D003356 ORTHO05D004362 5.1e-112 408.7 298 61.4
Zm00001eb065890 Zea mays HOM05D003356 ORTHO05D004362 5.1e-112 408.7 298 62.4
Sabra11G0105100 Salix brachista HOM05D003356 ORTHO05D004362 6.7e-112 408.3 316 60.4
Sc03g0009930 Simmondsia chinensis HOM05D003356 ORTHO05D004362 8.7e-112 407.9 301 62.1
Glyma.12G223200 Glycine max HOM05D003356 ORTHO05D004362 1.1e-111 407.5 301 63.5
Nn1g06580 Nelumbo nucifera HOM05D003356 ORTHO05D004362 1.1e-111 407.5 301 62.5
FAN21G0641 Fragaria x ananassa HOM05D003356 ORTHO05D004362 1.5e-111 407.1 315 60.6
Lj8C157T5 Lonicera japonica HOM05D003356 ORTHO05D004362 1.5e-111 407.1 301 60.8
Manes.15G086100 Manihot esculenta HOM05D003356 ORTHO05D004362 1.5e-111 407.1 301 61.8
Haze_09456 Corylus avellana HOM05D003356 ORTHO05D004362 1.9e-111 406.8 301 63.1
MSTRG.6840 Avicennia marina HOM05D003356 ORTHO05D004362 2.5e-111 406.4 301 61.8
Dinv08305 Davidia involucrata HOM05D003356 ORTHO05D004362 2.5e-111 406.4 301 61.5
arahy.Tifrunner.gnm1.ann1.4T1P38 Arachis hypogaea HOM05D003356 ORTHO05D004362 4.3e-111 405.6 323 60.4
Migut.M00849 Erythranthe guttata HOM05D003356 ORTHO05D004362 4.3e-111 405.6 301 62.8
Ciclev10007637m.g Citrus clementina HOM05D003356 ORTHO05D004362 5.6e-111 405.2 302 62.6
Cc05_g12200 Coffea canephora HOM05D003356 ORTHO05D004362 5.6e-111 405.2 299 61.2
FAN11G2849 Fragaria x ananassa HOM05D003356 ORTHO05D004362 5.6e-111 405.2 315 60.6
Aqoxy4G00927 Aquilegia oxysepala HOM05D003356 ORTHO05D004362 1.3e-110 404.1 298 61.7
Ca_20647_v3 Cicer arietinum L. HOM05D003356 ORTHO05D004362 2.1e-110 403.3 301 62.5
Actinidia35254 Actinidia chinensis HOM05D003356 ORTHO05D004362 2.8e-110 402.9 301 61.8
Aa31LG8G2610 Aethionema arabicum HOM05D003356 ORTHO05D004362 2.8e-110 402.9 301 62.1
Gorai.002G072200 Gossypium raimondii HOM05D003356 ORTHO05D004362 2.8e-110 402.9 301 61.5
Sopen07g031420 Solanum pennellii HOM05D003356 ORTHO05D004362 2.8e-110 402.9 302 62.9
Oeu005419.1 Olea europaea HOM05D003356 ORTHO05D004362 3.7e-110 402.5 301 61.1
Os04g0681600 Oryza sativa ssp. japonica HOM05D003356 ORTHO05D004362 3.7e-110 402.5 301 62.5
MSTRG.15221 Avicennia marina HOM05D003356 ORTHO05D004362 4.8e-110 402.1 301 61.1
Lj1A846T66 Lonicera japonica HOM05D003356 ORTHO05D004362 4.8e-110 402.1 301 62.5
PGSC0003DMG400012423 Solanum tuberosum HOM05D003356 ORTHO05D004362 4.8e-110 402.1 302 62.6
ATR0680G284 Amborella trichopoda HOM05D003356 ORTHO05D004362 6.2e-110 401.7 298 62.4
unitig_37.g12574 Utricularia gibba HOM05D003356 ORTHO05D004362 6.2e-110 401.7 314 58.6
SGA_v2.0_scaffold34G13734 Striga asiatica HOM05D003356 ORTHO05D004362 8.1e-110 401.4 301 60.5
CSS0023849 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 1.1e-109 401.0 302 61.6
Gohir.D01G052400 Gossypium hirsutum HOM05D003356 ORTHO05D004362 1.4e-109 400.6 301 61.1
Ah.06g183980 Amaranthus hybridus HOM05D003356 ORTHO05D004362 1.8e-109 400.2 293 62.5
AL3G27880 Arabidopsis lyrata HOM05D003356 ORTHO05D004362 2.4e-109 399.8 301 61.1
A03p39290 Brassica napus HOM05D003356 ORTHO05D004362 2.4e-109 399.8 301 60.8
Lalb_Chr25g0286471 Lupinus albus HOM05D003356 ORTHO05D004362 2.4e-109 399.8 301 62.1
BolC3t17043H Brassica oleracea HOM05D003356 ORTHO05D004362 3.1e-109 399.4 301 60.8
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 4.0e-109 399.1 301 60.8
THA.LOC104810480 Tarenaya hassleriana HOM05D003356 ORTHO05D004362 4.0e-109 399.1 301 61.8
Thhalv10020171m.g Eutrema salsugineum HOM05D003356 ORTHO05D004362 5.3e-109 398.7 301 61.8
Solyc07g063230.3 Solanum lycopersicum HOM05D003356 ORTHO05D004362 5.3e-109 398.7 302 62.3
AT3G15380 Arabidopsis thaliana HOM05D003356 ORTHO05D004362 6.9e-109 398.3 301 60.8
A05p34020 Brassica napus HOM05D003356 ORTHO05D004362 6.9e-109 398.3 301 60.5
C03p47660 Brassica napus HOM05D003356 ORTHO05D004362 6.9e-109 398.3 301 60.5
BraA05t22224Z Brassica rapa HOM05D003356 ORTHO05D004362 6.9e-109 398.3 301 60.5
Os04g0681400 Oryza sativa ssp. japonica HOM05D003356 ORTHO05D004362 6.9e-109 398.3 301 61.8
Ah.04g165130 Amaranthus hybridus HOM05D003356 ORTHO05D004362 9.0e-109 397.9 290 62.1
arahy.Tifrunner.gnm1.ann1.YHI9TY Arachis hypogaea HOM05D003356 ORTHO05D004362 1.2e-108 397.5 301 63.1
BcaC05g28976 Brassica carinata HOM05D003356 ORTHO05D004362 1.2e-108 397.5 301 60.5
C05p51790 Brassica napus HOM05D003356 ORTHO05D004362 1.2e-108 397.5 301 60.5
BolC5t33865H Brassica oleracea HOM05D003356 ORTHO05D004362 1.2e-108 397.5 301 60.5
vmacro11852 Vaccinium macrocarpon HOM05D003356 ORTHO05D004362 1.2e-108 397.5 301 59.8
BcaB06g29569 Brassica carinata HOM05D003356 ORTHO05D004362 1.5e-108 397.1 301 60.8
CAN.G162.68 Capsicum annuum HOM05D003356 ORTHO05D004362 1.5e-108 397.1 298 61.1
CARHR090420 Cardamine hirsuta HOM05D003356 ORTHO05D004362 1.5e-108 397.1 301 60.8
Ca_01833_v3 Cicer arietinum L. HOM05D003356 ORTHO05D004362 2.0e-108 396.7 301 61.1
Sp3g13630 Schrenkiella parvula HOM05D003356 ORTHO05D004362 2.0e-108 396.7 301 60.8
Peaxi162Scf00069g01337 Petunia axillaris HOM05D003356 ORTHO05D004362 2.6e-108 396.4 301 61.1
Phvul.005G082401 Phaseolus vulgaris HOM05D003356 ORTHO05D004362 2.6e-108 396.4 301 61.1
FAN25G0303 Fragaria x ananassa HOM05D003356 ORTHO05D004362 3.4e-108 396.0 328 57.9
PSO675G9024 Papaver somniferum HOM05D003356 ORTHO05D004362 4.5e-108 395.6 301 62.1
arahy.Tifrunner.gnm1.ann1.YA7R1N Arachis hypogaea HOM05D003356 ORTHO05D004362 5.8e-108 395.2 301 62.8
Lalb_Chr19g0134281 Lupinus albus HOM05D003356 ORTHO05D004362 5.8e-108 395.2 277 66.8
Carub.0003s1510 Capsella rubella HOM05D003356 ORTHO05D004362 1.0e-107 394.4 301 60.8
Nitab4.5_0003688g0040 Nicotiana tabacum HOM05D003356 ORTHO05D004362 1.3e-107 394.0 301 61.1
CSS0014763 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 2.2e-107 393.3 301 60.1
Gohir.A01G065000 Gossypium hirsutum HOM05D003356 ORTHO05D004362 2.9e-107 392.9 301 60.1
PSO541G1226 Papaver somniferum HOM05D003356 ORTHO05D004362 3.8e-107 392.5 301 61.8
Nitab4.5_0001551g0030 Nicotiana tabacum HOM05D003356 ORTHO05D004362 8.4e-107 391.3 301 60.8
Psat5g244680 Pisum sativum HOM05D003356 ORTHO05D004362 1.1e-106 391.0 301 60.5
Rhsim06G0197100 Rhododendron simsii HOM05D003356 ORTHO05D004362 2.5e-106 389.8 301 59.5
Aqoxy1G02485 Aquilegia oxysepala HOM05D003356 ORTHO05D004362 7.1e-106 388.3 269 63.9
AUR62034265 Chenopodium quinoa HOM05D003356 ORTHO05D004362 9.3e-106 387.9 283 62.2
Lj3g0006216 Lotus japonicus HOM05D003356 ORTHO05D004362 1.2e-105 387.5 301 60.8
AUR62029372 Chenopodium quinoa HOM05D003356 ORTHO05D004362 1.6e-105 387.1 283 61.8
MBI17_g30525_MAGBIO Magnolia biondii HOM05D003356 ORTHO05D004362 2.7e-105 386.3 280 63.6
vmacro09540 Vaccinium macrocarpon HOM05D003356 ORTHO05D004362 7.9e-105 384.8 350 54.3
Lsat_1_v5_gn_7_105200 Lactuca sativa HOM05D003356 ORTHO05D004362 1.8e-104 383.6 299 60.2
Medtr2g079490 Medicago truncatula HOM05D003356 ORTHO05D004362 6.7e-104 381.7 269 66.5
CDE04G3674 Ceratophyllum demersum HOM05D003356 ORTHO05D004362 3.3e-103 379.4 298 58.7
ClCG11G018140 Citrullus lanatus HOM05D003356 ORTHO05D004362 4.3e-103 379.0 301 59.8
ECA236G2009 Erigeron canadensis HOM05D003356 ORTHO05D004362 7.4e-103 378.3 294 60.9
CDE06G0677 Ceratophyllum demersum HOM05D003356 ORTHO05D004362 1.3e-102 377.5 298 57.7
Dinv07551 Davidia involucrata HOM05D003356 ORTHO05D004362 1.4e-101 374.0 245 69.8
DCAR_019547 Daucus carota HOM05D003356 ORTHO05D004362 1.8e-101 373.6 288 59.4
HanXRQChr15g0494641 Helianthus annuus HOM05D003356 ORTHO05D004362 2.4e-101 373.2 292 58.9
HanXRQChr11g0328451 Helianthus annuus HOM05D003356 ORTHO05D004362 1.5e-100 370.5 294 58.5
HPP92_020870 Vanilla planifolia HOM05D003356 ORTHO05D004362 3.2e-90 336.3 256 61.3
Duzib213G0462 Durio zibethinus HOM05D003356 ORTHO05D004362 2.7e-89 333.2 311 51.8
Actinidia05623 Actinidia chinensis HOM05D003356 ORTHO05D004362 1.5e-84 317.4 301 54.5
Pp3c9_13290 Physcomitrium patens HOM05D003356 ORTHO05D004362 5.0e-83 312.4 268 51.5
AagrBONN_evm.TU.Sc2ySwM_228.601 Anthoceros agrestis HOM05D003356 ORTHO05D004362 8.5e-83 311.6 300 48.3
BcaC01g03876 Brassica carinata HOM05D003356 ORTHO05D004362 5.7e-79 298.9 205 62.4
MELO3C016707.2 Cucumis melo HOM05D003356 ORTHO05D004362 1.3e-75 287.7 278 52.9
Pp3c13_16790 Physcomitrium patens HOM05D003356 ORTHO05D004362 1.2e-73 281.2 270 48.1
Mapoly0001s0233 Marchantia polymorpha HOM05D003356 ORTHO05D004362 1.6e-73 280.8 313 44.7
HPP92_028116 Vanilla planifolia HOM05D003356 ORTHO05D004362 9.1e-69 265.0 195 61.5
CBR_g50441 Chara braunii HOM05D003356 ORTHO05D004362 4.7e-65 252.7 287 42.5
CBR_g34644 Chara braunii HOM05D003356 ORTHO05D004362 4.0e-64 249.6 282 44.7
Hund02220 Selenicereus undatus HOM05D003356 ORTHO05D004362 2.0e-55 220.7 226 46.9
SEGI_15216 Sequoiadendron giganteum HOM05D003356 ORTHO05D004362 3.1e-53 213.4 158 56.3
CBR_g34641 Chara braunii HOM05D003356 ORTHO05D004362 1.2e-52 211.5 256 42.2
arahy.Tifrunner.gnm1.ann1.AFV8NH Arachis hypogaea HOM05D003356 ORTHO05D004362 9.5e-50 201.8 192 52.6
MCO09G800 Micromonas commoda HOM05D003356 ORTHO05D004362 4.1e-45 186.4 289 33.9
BraA01t03913Z Brassica rapa HOM05D003356 ORTHO05D019431 1.1e-21 108.6 129 42.6
SEGI_32695 Sequoiadendron giganteum HOM05D003356 ORTHO05D004362 1.1e-21 108.6 89 58.4
BcaC09g48503 Brassica carinata HOM05D003356 ORTHO05D019431 7.8e-20 102.4 112 49.1
Actinidia18762 Actinidia chinensis HOM05D003356 ORTHO05D019431 5.1e-19 99.8 84 51.2
QL08p020501 Quercus lobata HOM05D003356 ORTHO05D043358 9.6e-18 95.5 72 63.9
C01p49070 Brassica napus HOM05D003356 ORTHO05D019431 1.2e-15 88.6 95 47.4
BolC1t04870H Brassica oleracea HOM05D003356 ORTHO05D019431 1.2e-15 88.6 95 47.4
Cre01.g021500 Chlamydomonas reinhardtii HOM05D003356 ORTHO05D004362 1.3e-14 85.1 332 25.9
CSS0004554 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D043358 1.4e-13 81.6 73 56.2
MCO04G353 Micromonas commoda HOM05D003356 ORTHO05D004362 1.2e-12 78.6 185 27.6
HPP92_014741 Vanilla planifolia HOM05D003356 ORTHO05D004362 1.5e-10 71.6 158 32.3
PRCOL_00004496 Prasinoderma coloniale HOM05D003356 ORTHO05D004362 2.5e-10 70.9 299 26.1
PRCOL_00001307 Prasinoderma coloniale HOM05D003356 ORTHO05D004362 7.3e-10 69.3 321 23.7
A01p38720 Brassica napus HOM05D003356 ORTHO05D019431 6.2e-09 66.2 115 36.5
BcaB04g19328 Brassica carinata HOM05D003356 ORTHO05D019431 1.8e-08 64.7 45 60.0
PRCOL_00001912 Prasinoderma coloniale HOM05D003356 ORTHO05D004362 4.9e-06 56.6 124 27.4
Rhsim05G0102700 Rhododendron simsii HOM05D001937 ORTHO05D009414 8.4e-06 55.8 38 57.9


User provided reference genes

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