Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 0.0e+00 1311.2 643 100.0
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 1.2e-248 863.2 664 70.6
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 4.1e-244 848.2 665 65.4
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 2.5e-241 839.0 643 67.3
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 1.8e-239 832.8 633 67.9
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 5.2e-239 831.2 550 74.4
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 2.4e-236 822.4 656 65.1
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 7.3e-233 810.8 655 63.1
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 1.3e-232 810.1 664 63.1
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 1.3e-232 810.1 664 63.1
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 2.1e-232 809.3 519 78.0
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.8e-232 808.9 655 63.7
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 2.8e-232 808.9 598 67.9
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 1.1e-231 807.0 655 63.4
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.1e-231 807.0 655 63.4
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.1e-231 805.4 655 63.2
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 6.9e-231 804.3 522 75.3
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 9.0e-231 803.9 655 62.4
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.0e-230 802.7 655 63.1
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 4.4e-230 801.6 649 64.4
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 4.4e-230 801.6 665 63.2
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 7.6e-230 800.8 665 63.2
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.3e-229 800.0 660 63.3
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.7e-229 799.7 644 64.1
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 1.7e-229 799.7 561 70.2
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.2e-229 799.3 648 63.6
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 2.9e-229 798.9 648 63.4
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.1e-228 797.0 653 63.2
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 1.4e-228 796.6 546 70.3
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 1.4e-228 796.6 657 63.6
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 1.4e-228 796.6 543 71.3
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 2.4e-228 795.8 646 63.2
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 5.4e-228 794.7 642 64.2
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 7.1e-228 794.3 651 63.0
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 9.3e-228 793.9 652 63.2
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 1.2e-227 793.5 649 63.9
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 2.7e-227 792.3 552 69.9
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 6.0e-227 791.2 668 60.9
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 1.0e-226 790.4 647 63.4
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.3e-226 790.0 653 63.1
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 3.0e-226 788.9 650 62.6
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 5.1e-226 788.1 653 62.9
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 1.1e-225 786.9 637 63.6
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 1.9e-225 786.2 545 71.6
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 2.5e-225 785.8 653 61.7
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 2.5e-225 785.8 653 61.7
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 9.6e-225 783.9 607 66.4
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 2.8e-224 782.3 547 70.9
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 2.8e-224 782.3 646 62.7
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 3.1e-223 778.9 559 68.2
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 2.0e-222 776.2 653 61.4
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 5.8e-222 774.6 646 61.8
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 7.6e-222 774.2 677 60.6
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 7.6e-222 774.2 657 62.9
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 2.9e-221 772.3 551 69.3
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 2.9e-221 772.3 551 69.3
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 3.8e-221 771.9 647 62.0
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 2.1e-219 766.1 663 61.4
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 1.8e-218 763.1 542 70.7
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 3.9e-218 761.9 541 69.7
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 6.7e-218 761.1 671 61.4
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 8.7e-218 760.8 541 69.7
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 1.1e-217 760.4 664 60.8
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 1.5e-217 760.0 552 66.8
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 1.9e-217 759.6 551 67.9
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 1.9e-217 759.6 541 69.9
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 3.3e-217 758.8 625 62.9
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 7.4e-217 757.7 555 67.2
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 1.3e-216 756.9 541 69.3
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 1.3e-216 756.9 657 60.7
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 2.8e-216 755.7 661 59.8
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 1.4e-215 753.4 670 60.3
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 4.0e-215 751.9 658 61.2
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 5.3e-215 751.5 544 68.2
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 6.9e-215 751.1 559 67.8
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 2.0e-214 749.6 655 61.8
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 2.2e-213 746.1 543 67.8
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 1.6e-211 740.0 551 67.3
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 2.7e-211 739.2 644 60.1
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 6.0e-211 738.0 530 68.3
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 5.1e-210 734.9 559 66.7
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 3.7e-208 728.8 555 66.8
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 1.1e-207 727.2 666 59.6
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 5.3e-207 724.9 542 67.3
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 5.3e-207 724.9 553 65.5
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 2.6e-206 722.6 548 66.1
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 4.5e-206 721.8 555 66.3
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 1.7e-205 719.9 665 58.9
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 2.2e-205 719.5 614 62.9
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 3.8e-205 718.8 547 64.9
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 5.0e-205 718.4 654 60.6
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 5.0e-205 718.4 674 58.2
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 1.9e-204 716.5 661 57.3
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 2.5e-204 716.1 657 60.7
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 2.5e-204 716.1 657 60.7
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 2.5e-204 716.1 657 60.7
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 3.2e-204 715.7 657 60.1
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 7.1e-204 714.5 655 60.3
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 2.1e-203 713.0 641 58.0
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 2.7e-203 712.6 574 64.1
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 1.3e-202 710.3 553 64.0
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 6.7e-202 708.0 661 56.6
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 5.7e-201 704.9 572 63.3
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 8.2e-200 701.0 547 63.8
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 4.1e-199 698.7 651 57.9
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 6.9e-199 698.0 563 62.5
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 9.4e-196 687.6 654 56.7
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 7.9e-195 684.5 520 66.0
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 3.9e-194 682.2 527 66.0
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 7.4e-193 677.9 624 56.1
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 4.1e-191 672.2 646 57.4
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 4.1e-191 672.2 646 57.4
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 4.1e-191 672.2 646 57.4
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 1.1e-188 664.1 654 56.1
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 5.7e-185 651.7 644 56.5
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 1.3e-184 650.6 657 54.8
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 2.4e-183 646.4 654 55.8
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.5e-177 627.1 626 54.5
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 1.3e-176 624.0 561 58.3
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 1.2e-169 600.9 679 51.0
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 1.9e-164 583.6 428 67.1
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 8.8e-162 574.7 590 53.2
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 5.7e-161 572.0 662 49.7
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 7.2e-156 555.1 531 56.9
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 5.0e-149 532.3 550 53.8
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 5.6e-148 528.9 518 56.2
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 4.6e-142 509.2 436 62.2
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.9e-140 503.8 571 47.5
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.2e-123 448.0 386 57.3
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 2.5e-116 423.7 331 62.2
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 2.4e-114 417.2 389 54.8
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 2.4e-90 337.4 276 59.4
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 1.0e-80 305.4 351 51.0
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 5.9e-73 279.6 609 32.3
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 8.5e-64 249.2 388 42.0
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 2.2e-56 224.6 215 54.9
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 2.6e-52 211.1 167 61.7
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 2.3e-40 171.4 161 53.4
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 2.2e-35 154.8 164 51.8
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 8.6e-32 142.9 296 31.8
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 8.6e-24 116.3 101 60.4
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 1.6e-22 112.1 81 70.4
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 1.6e-17 95.5 217 37.3
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 2.5e-15 88.2 76 57.9
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 6.2e-14 83.6 109 44.0
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 1.6e-09 68.9 164 35.4
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 2.8e-06 58.2 60 56.7


User provided reference genes

Program Settings