Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 2.5e-187 658.7 349 100.0
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 1.3e-143 513.5 311 82.3
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 2.2e-135 486.1 311 77.8
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 2.7e-128 462.6 312 74.0
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 2.9e-127 459.1 312 73.7
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 1.1e-126 457.2 313 75.1
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 4.2e-126 455.3 312 72.8
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 5.5e-126 454.9 312 72.4
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 9.5e-126 454.1 312 72.1
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 9.5e-126 454.1 313 74.1
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 2.1e-125 453.0 311 74.0
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 2.1e-125 453.0 312 72.4
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 2.8e-125 452.6 312 73.4
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 2.8e-125 452.6 317 73.5
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 6.1e-125 451.4 313 73.5
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 6.1e-125 451.4 311 74.6
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 6.1e-125 451.4 311 72.3
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 1.4e-124 450.3 312 70.5
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 1.8e-124 449.9 312 72.1
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 2.3e-124 449.5 313 70.9
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 3.0e-124 449.1 313 73.5
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 3.0e-124 449.1 313 70.9
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 5.2e-124 448.4 313 72.5
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 5.2e-124 448.4 312 71.8
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 5.2e-124 448.4 312 72.4
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 8.8e-124 447.6 319 71.5
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 1.2e-123 447.2 311 72.0
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 1.2e-123 447.2 312 72.4
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 2.0e-123 446.4 312 71.8
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 3.4e-123 445.7 312 73.1
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 1.3e-122 443.7 313 72.8
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 2.2e-122 443.0 313 74.1
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 3.7e-122 442.2 311 72.3
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 6.3e-122 441.4 312 71.8
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 8.3e-122 441.0 312 69.6
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 1.1e-121 440.7 311 70.7
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 1.1e-121 440.7 312 70.8
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 1.4e-121 440.3 310 71.3
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 1.4e-121 440.3 306 70.9
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 1.4e-121 440.3 326 70.6
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 1.4e-121 440.3 308 70.1
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 1.8e-121 439.9 312 70.2
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 3.1e-121 439.1 313 70.6
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 1.2e-120 437.2 312 71.5
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 1.2e-120 437.2 300 73.0
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 1.0e-119 434.1 312 70.8
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 2.3e-119 433.0 317 69.7
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 3.8e-119 432.2 311 69.5
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 5.0e-119 431.8 310 69.4
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 6.6e-119 431.4 312 68.3
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 8.6e-119 431.0 312 70.8
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 8.6e-119 431.0 312 68.6
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 1.1e-118 430.6 310 69.0
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 1.1e-118 430.6 312 68.6
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 1.5e-118 430.3 322 69.6
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 3.3e-118 429.1 312 68.9
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 3.3e-118 429.1 310 69.7
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 4.3e-118 428.7 312 67.3
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 9.5e-118 427.6 310 69.7
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 9.5e-118 427.6 310 68.7
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 9.5e-118 427.6 312 67.9
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 9.5e-118 427.6 315 68.3
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 1.2e-117 427.2 312 68.3
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 1.2e-117 427.2 312 68.3
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 2.1e-117 426.4 329 68.4
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 8.0e-117 424.5 319 67.1
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 6.8e-116 421.4 316 67.1
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 8.9e-116 421.0 311 68.5
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 2.0e-115 419.9 385 60.0
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 2.6e-115 419.5 310 67.1
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 1.3e-114 417.2 310 67.4
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 3.7e-114 415.6 309 67.3
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 3.7e-114 415.6 309 67.3
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 4.9e-114 415.2 316 65.8
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 4.9e-114 415.2 310 68.1
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 6.4e-114 414.8 310 68.1
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 1.4e-113 413.7 309 67.3
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 2.4e-113 412.9 309 67.0
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 2.4e-113 412.9 309 67.0
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 2.4e-113 412.9 307 66.8
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 3.2e-113 412.5 310 66.8
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 3.2e-113 412.5 312 65.4
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 1.2e-112 410.6 306 68.0
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.2e-112 410.6 309 66.0
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 4.6e-112 408.7 312 64.4
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 2.3e-111 406.4 311 66.6
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 3.3e-110 402.5 310 62.9
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 5.2e-108 395.2 282 70.6
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 9.2e-105 384.4 285 66.7
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 9.2e-105 384.4 285 66.7
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.0e-103 380.9 312 64.7
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 1.7e-103 380.2 253 72.7
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 8.6e-103 377.9 309 60.2
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 9.9e-99 364.4 283 64.0
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 6.4e-98 361.7 312 61.5
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 3.6e-93 345.9 302 58.3
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 3.8e-90 335.9 301 57.1
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 1.4e-89 334.0 308 55.2
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 2.4e-89 333.2 292 57.9
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 2.4e-84 316.6 230 69.6
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 2.0e-83 313.5 303 51.8
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.0e-83 313.5 303 51.2
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 2.6e-83 313.2 303 52.1
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 7.6e-83 311.6 302 52.6
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 7.6e-83 311.6 229 68.6
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.8e-82 309.3 302 52.0
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 8.4e-82 308.1 303 50.2
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 1.1e-81 307.8 308 50.0
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 2.4e-81 306.6 302 52.0
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 5.4e-81 305.4 302 51.3
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 5.4e-81 305.4 303 49.8
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 1.6e-80 303.9 304 50.0
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 6.0e-80 302.0 302 51.7
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 7.8e-80 301.6 303 51.8
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.0e-79 301.2 303 51.5
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 1.0e-79 301.2 301 51.5
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 2.3e-79 300.1 303 50.8
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 2.3e-79 300.1 303 50.8
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 3.0e-79 299.7 229 64.6
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 5.1e-79 298.9 301 51.2
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 8.7e-79 298.1 304 50.7
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 1.1e-78 297.7 303 50.5
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.5e-78 297.4 303 50.5
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 4.3e-78 295.8 304 50.7
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 4.3e-78 295.8 303 49.8
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 7.3e-78 295.0 303 48.8
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 3.6e-77 292.7 308 49.0
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 4.8e-77 292.4 303 50.8
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 8.1e-77 291.6 299 49.8
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 8.1e-77 291.6 229 65.5
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.8e-76 290.4 302 49.3
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 2.4e-76 290.0 304 49.7
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 4.0e-76 289.3 301 49.5
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.0e-75 287.0 307 48.9
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 3.4e-75 286.2 304 50.0
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 5.8e-75 285.4 304 49.7
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 9.9e-75 284.6 303 48.8
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 9.9e-75 284.6 304 49.7
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 1.7e-74 283.9 283 51.9
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 7.1e-73 278.5 303 46.5
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.6e-69 267.3 281 49.5
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 2.8e-69 266.5 291 48.8
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 2.9e-66 256.5 304 46.4
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 1.9e-65 253.8 290 46.6
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 2.3e-63 246.9 283 47.7
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 4.3e-62 242.7 247 49.0
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 2.1e-61 240.4 244 50.0
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 1.7e-58 230.7 295 47.1
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 1.9e-57 227.3 263 44.9
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 7.1e-57 225.3 175 66.3
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 1.5e-51 207.6 334 37.7
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 6.5e-50 202.2 221 47.5
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 1.6e-48 197.6 206 50.0
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 1.6e-48 197.6 206 50.0
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 4.3e-46 189.5 203 53.7
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 1.3e-42 177.9 190 50.0
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 2.0e-38 164.1 131 54.2
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 4.8e-37 159.5 131 53.4
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 4.8e-37 159.5 131 53.4
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 2.9e-34 150.2 83 84.3
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.5e-30 137.9 303 32.7
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 4.4e-30 136.3 111 51.4
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 3.7e-29 133.3 163 47.9
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 6.7e-23 112.5 105 58.1
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 4.4e-22 109.8 160 45.0
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 4.8e-21 106.3 312 27.9
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 2.8e-13 80.5 59 67.8


User provided reference genes

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