Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 4.3e-122 441.4 237 100.0
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 2.8e-89 332.4 221 78.7
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 3.1e-80 302.4 226 68.6
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 2.5e-77 292.7 193 76.7
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 5.3e-72 275.0 232 60.8
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 9.1e-72 274.2 231 60.6
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 9.1e-72 274.2 203 67.5
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 5.9e-71 271.6 203 66.5
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.1e-69 267.3 235 60.0
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 4.2e-69 265.4 232 59.1
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 5.5e-69 265.0 225 60.4
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 7.2e-69 264.6 226 59.7
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 1.2e-68 263.8 202 64.4
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 2.1e-68 263.1 193 68.9
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 1.4e-67 260.4 226 58.8
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 3.0e-67 259.2 222 60.4
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 3.4e-66 255.8 224 58.5
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 7.5e-66 254.6 221 60.2
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 9.7e-66 254.2 193 62.2
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 1.3e-65 253.8 224 59.4
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 1.8e-64 250.0 225 54.2
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 2.4e-64 249.6 192 63.0
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 3.1e-64 249.2 229 57.6
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 4.1e-64 248.8 226 56.2
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 5.3e-64 248.4 223 56.5
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 9.1e-64 247.7 227 55.9
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 9.1e-64 247.7 199 60.3
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 1.6e-63 246.9 195 63.1
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 2.0e-63 246.5 222 56.8
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 2.7e-63 246.1 186 64.5
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 3.5e-63 245.7 194 60.3
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 3.5e-63 245.7 227 55.5
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 4.5e-63 245.4 224 56.2
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 1.0e-62 244.2 227 54.6
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 1.0e-62 244.2 224 56.7
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 1.3e-62 243.8 193 59.6
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 1.3e-62 243.8 227 55.9
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 2.9e-62 242.7 222 56.3
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 3.8e-62 242.3 202 60.9
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 3.8e-62 242.3 192 63.0
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 3.8e-62 242.3 192 63.0
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 3.8e-62 242.3 180 66.7
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 8.5e-62 241.1 192 62.5
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.1e-61 240.7 221 56.1
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 1.1e-61 240.7 199 60.3
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 1.5e-61 240.4 224 54.0
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 1.9e-61 240.0 227 53.3
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 2.5e-61 239.6 223 55.6
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 3.2e-61 239.2 221 54.3
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 4.2e-61 238.8 221 54.3
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 5.5e-61 238.4 194 59.8
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 7.2e-61 238.0 192 60.4
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 7.2e-61 238.0 194 63.4
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 1.6e-60 236.9 222 56.8
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 1.6e-60 236.9 187 62.6
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 4.7e-60 235.3 184 61.4
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 4.7e-60 235.3 221 56.6
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 4.7e-60 235.3 227 52.4
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 6.1e-60 235.0 192 59.9
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 1.0e-59 234.2 224 56.7
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 1.8e-59 233.4 192 58.9
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 1.8e-59 233.4 192 60.9
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.8e-59 233.4 200 58.5
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 3.0e-59 232.6 193 63.2
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 3.0e-59 232.6 203 58.6
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 6.8e-59 231.5 241 52.7
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 6.8e-59 231.5 224 54.0
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 8.8e-59 231.1 192 58.3
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 8.8e-59 231.1 192 59.9
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 1.2e-58 230.7 194 61.3
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 1.5e-58 230.3 192 58.9
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 2.0e-58 229.9 193 61.7
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 2.0e-58 229.9 192 60.4
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 2.0e-58 229.9 191 60.7
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 3.4e-58 229.2 221 52.0
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 3.4e-58 229.2 222 55.4
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 3.4e-58 229.2 192 58.3
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 4.4e-58 228.8 192 57.3
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 4.4e-58 228.8 223 53.4
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 4.4e-58 228.8 192 56.8
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 4.4e-58 228.8 226 52.7
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 5.7e-58 228.4 181 58.6
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 5.7e-58 228.4 181 58.6
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 7.5e-58 228.0 232 51.3
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 9.8e-58 227.6 223 55.2
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 1.7e-57 226.9 186 58.1
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 1.7e-57 226.9 181 58.0
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 1.7e-57 226.9 253 49.0
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 1.7e-57 226.9 205 57.6
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 2.2e-57 226.5 224 53.6
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 2.8e-57 226.1 181 58.0
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 8.3e-57 224.6 224 53.6
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 1.1e-56 224.2 191 60.7
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.1e-56 224.2 224 51.8
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.8e-56 223.4 193 56.0
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 4.1e-56 222.2 192 56.2
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 5.4e-56 221.9 244 49.2
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 7.7e-55 218.0 196 56.6
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 7.7e-55 218.0 192 55.7
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 1.1e-53 214.2 181 54.7
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 5.5e-53 211.8 173 60.7
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 9.5e-53 211.1 173 60.7
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 1.4e-51 207.2 198 55.1
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 1.4e-51 207.2 198 55.1
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 2.3e-51 206.5 203 53.2
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 4.0e-51 205.7 196 53.6
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 5.2e-51 205.3 198 53.0
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 6.8e-51 204.9 198 54.5
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 6.8e-51 204.9 150 63.3
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 6.8e-51 204.9 214 50.5
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 2.6e-50 203.0 245 49.4
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.8e-49 199.5 178 57.3
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 2.4e-48 196.4 216 50.5
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 4.1e-48 195.7 177 53.7
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 2.0e-47 193.4 177 52.5
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 1.0e-46 191.0 153 61.4
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 9.5e-45 184.5 159 56.6
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 6.1e-44 181.8 199 51.8
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 5.2e-43 178.7 122 71.3
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 5.2e-43 178.7 192 50.0
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 4.4e-42 175.6 184 48.9
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 5.8e-42 175.3 140 61.4
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 1.2e-39 167.5 174 48.9
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 3.0e-38 162.9 130 59.2
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 3.9e-38 162.5 198 49.0
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 7.3e-37 158.3 229 41.9
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 6.2e-36 155.2 194 46.9
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 3.1e-35 152.9 197 43.1
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 1.7e-33 147.1 180 44.4
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 3.7e-33 146.0 151 48.3
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 3.9e-30 136.0 181 44.2
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 2.5e-29 133.3 182 42.9
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 7.3e-29 131.7 199 41.2
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 8.1e-28 128.3 176 43.8
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 8.3e-25 118.2 116 50.0
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 1.3e-22 110.9 143 43.4
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.9e-21 107.1 76 69.7
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.7e-17 94.0 86 57.0
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.9e-13 80.5 99 44.4
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 4.8e-12 75.9 176 28.4
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 2.6e-10 70.1 58 50.0
CBR_g74690 Chara braunii HOM05D004951 ORTHO05D005840 4.2e-08 62.8 161 30.4
GSVIVG01010657001 Vitis vinifera HOM05D002399 ORTHO05D005840 3.9e-06 56.2 36 69.4


User provided reference genes

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