Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 0.0e+00 1572.0 827 100.0
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 0.0e+00 1191.0 831 77.0
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 0.0e+00 1167.5 838 75.3
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 5.8e-283 977.6 834 63.9
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 4.9e-282 974.5 831 63.1
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 1.4e-281 973.0 828 63.8
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 3.5e-280 968.4 827 62.8
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 7.9e-280 967.2 830 63.0
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 5.6e-278 961.1 828 61.8
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 2.0e-275 952.6 835 62.9
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.9e-273 946.0 838 60.5
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 3.5e-272 941.8 836 61.8
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 1.8e-271 939.5 841 62.2
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 3.3e-270 935.3 850 61.2
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 3.3e-270 935.3 838 61.9
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 5.7e-270 934.5 832 60.5
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 7.4e-270 934.1 834 60.8
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 1.6e-269 932.9 835 60.7
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 1.6e-269 932.9 838 61.1
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 2.1e-269 932.6 838 62.4
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 4.8e-269 931.4 830 62.0
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 4.8e-269 931.4 825 61.3
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 1.1e-268 930.2 832 61.4
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 1.4e-268 929.9 827 61.5
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 6.9e-268 927.5 829 60.9
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 2.0e-267 926.0 836 61.0
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 2.6e-267 925.6 836 60.6
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 5.9e-267 924.5 827 60.2
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 7.6e-267 924.1 831 60.0
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 7.6e-267 924.1 833 59.9
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.7e-266 922.9 845 60.0
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 2.2e-266 922.5 830 61.3
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 3.8e-266 921.8 833 60.5
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 3.8e-266 921.8 827 60.5
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 5.0e-266 921.4 829 60.0
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 8.4e-266 920.6 828 60.1
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 1.9e-265 919.5 858 60.1
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 2.5e-265 919.1 830 59.9
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 2.5e-265 919.1 835 59.4
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 4.2e-265 918.3 831 59.7
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 9.3e-265 917.1 831 59.8
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 7.9e-264 914.1 831 59.6
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 7.9e-264 914.1 829 60.0
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 1.3e-263 913.3 833 60.0
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 1.3e-263 913.3 831 60.0
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 3.9e-263 911.8 830 60.5
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 8.7e-263 910.6 828 60.0
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 1.1e-262 910.2 824 60.4
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 5.7e-262 907.9 836 59.8
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 7.4e-262 907.5 838 61.2
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.6e-261 906.4 836 58.4
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 3.7e-261 905.2 840 59.3
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 8.2e-261 904.0 828 59.4
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 1.4e-260 903.3 838 59.9
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.8e-260 902.9 835 58.8
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 5.3e-260 901.4 843 58.7
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 3.8e-258 895.2 842 59.5
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 2.1e-256 889.4 830 58.9
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 2.3e-255 885.9 839 58.0
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 2.0e-254 882.9 828 58.0
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 1.4e-252 876.7 834 57.7
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 2.9e-250 869.0 824 56.9
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.1e-246 857.1 843 58.2
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 1.5e-246 856.7 837 56.2
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 2.0e-246 856.3 834 58.0
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.1e-244 850.5 842 57.7
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 2.4e-244 849.4 924 53.6
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 5.9e-243 844.7 829 56.2
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 1.0e-242 844.0 840 58.2
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 6.7e-239 831.2 868 55.3
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 1.8e-236 823.2 833 57.6
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 4.5e-235 818.5 834 56.1
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 8.5e-234 814.3 835 55.0
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 9.4e-233 810.8 842 55.6
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 2.6e-230 802.7 837 53.5
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 1.7e-229 800.0 816 54.9
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 6.3e-229 798.1 855 53.5
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 1.1e-228 797.3 836 53.7
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 9.1e-228 794.3 855 52.7
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 3.5e-227 792.3 841 54.6
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 1.7e-226 790.0 783 56.1
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 2.2e-226 789.6 835 54.0
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 1.6e-224 783.5 832 53.7
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 3.6e-224 782.3 832 53.8
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 3.6e-224 782.3 822 54.0
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 1.4e-223 780.4 820 53.5
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 8.8e-223 777.7 819 53.7
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 8.8e-223 777.7 819 53.7
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 3.5e-219 765.8 819 53.0
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 3.5e-219 765.8 819 53.0
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 1.8e-215 753.4 840 52.6
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 1.7e-213 746.9 835 52.0
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 1.9e-204 716.8 842 50.2
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 3.5e-203 712.6 833 51.6
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 7.3e-201 704.9 806 51.1
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 2.8e-200 703.0 679 56.7
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 2.0e-198 696.8 828 49.9
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 2.7e-195 686.4 686 55.1
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 2.7e-195 686.4 845 47.6
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 2.0e-182 643.7 622 56.3
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 9.3e-180 634.8 600 59.2
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 6.0e-179 632.1 549 61.2
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 4.2e-172 609.4 604 56.1
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 1.5e-153 547.7 861 40.0
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 9.7e-145 518.5 450 62.4
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 6.3e-136 489.2 813 39.2
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 3.4e-134 483.4 832 38.3
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 1.0e-133 481.9 884 36.5
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 3.5e-126 456.8 374 63.9
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 5.9e-126 456.1 482 54.1
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.6e-118 431.4 386 60.6
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 1.4e-114 418.3 448 53.8
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 4.5e-110 403.3 674 38.6
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 4.0e-106 390.2 457 50.5
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 4.4e-105 386.7 306 65.0
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 7.5e-97 359.4 288 64.2
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 1.4e-90 338.6 325 58.8
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 2.4e-87 327.8 449 45.4
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 6.6e-77 293.1 200 74.0
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.9e-76 291.6 336 48.8
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 2.6e-73 281.2 283 58.0
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 4.4e-73 280.4 235 62.6
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 5.8e-73 280.0 238 62.6
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 2.2e-64 251.5 227 56.4
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 4.2e-63 247.3 936 27.2
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 2.1e-62 245.0 155 78.1
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 1.6e-59 235.3 182 63.2
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 1.2e-57 229.2 266 52.6
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 1.4e-55 222.2 213 55.4
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.9e-44 185.3 182 55.5
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.7e-43 181.0 151 62.9
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 5.3e-42 177.2 206 53.4
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 3.9e-37 161.0 170 52.4
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 1.4e-34 152.5 159 54.1
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 7.6e-33 146.7 144 57.6
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 7.2e-31 140.2 177 46.9
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.7e-27 129.0 105 62.9
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 1.7e-27 129.0 573 24.4
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 3.7e-27 127.9 273 39.2
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 1.1e-26 126.3 578 25.6
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 1.5e-25 122.5 275 37.8
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 1.7e-24 119.0 282 36.9
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 6.5e-24 117.1 105 56.2
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 1.0e-21 109.8 71 69.0
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 3.0e-21 108.2 81 66.7
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 8.8e-21 106.7 599 23.7
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 1.1e-18 99.8 120 49.2
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 1.1e-15 89.7 186 37.6
ECA232G0241 Erigeron canadensis HOM05D004092 ORTHO05D005448 1.4e-15 89.4 78 65.4
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 6.1e-14 84.0 96 54.2
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.8e-13 82.4 50 74.0
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 1.7e-11 75.9 177 40.1
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.8e-11 75.1 59 57.6
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 9.1e-10 70.1 174 34.5
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 1.2e-09 69.7 92 45.7
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 2.0e-09 68.9 180 38.3
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 3.5e-09 68.2 54 59.3
Actinidia37123 Actinidia chinensis HOM05D004092 ORTHO05D005448 4.2e-07 61.2 121 38.8
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 2.7e-06 58.5 224 24.1


User provided reference genes

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