Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 2.0e-144 515.8 262 100.0
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 1.3e-132 476.5 263 92.4
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 2.5e-131 472.2 265 91.3
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.9e-107 392.9 263 76.0
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.9e-107 392.9 263 76.0
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 1.1e-105 387.1 265 75.1
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 1.8e-105 386.3 265 74.3
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 3.1e-105 385.6 264 74.6
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 2.6e-104 382.5 264 72.7
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 2.6e-104 382.5 266 75.9
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 4.5e-104 381.7 263 73.8
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 5.8e-104 381.3 264 73.1
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 7.6e-104 380.9 261 75.9
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 1.7e-103 379.8 263 76.4
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 2.2e-103 379.4 263 76.4
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 3.2e-102 375.6 263 73.8
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 1.2e-101 373.6 267 72.7
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 1.8e-100 369.8 260 70.8
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 1.8e-100 369.8 264 70.8
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 3.0e-100 369.0 265 71.3
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 3.9e-100 368.6 264 70.8
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 3.9e-100 368.6 260 67.7
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 1.1e-99 367.1 266 69.5
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 1.5e-99 366.7 268 69.0
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 1.9e-99 366.3 267 69.3
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 1.9e-99 366.3 265 71.7
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 2.5e-99 365.9 263 68.4
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 1.6e-98 363.2 266 72.2
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 2.2e-98 362.8 269 69.1
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 2.2e-98 362.8 264 69.3
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 4.8e-98 361.7 263 69.6
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 4.8e-98 361.7 262 68.7
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 8.2e-98 360.9 274 71.9
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 1.8e-97 359.8 266 69.2
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 2.4e-97 359.4 264 72.3
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 4.1e-97 358.6 267 68.5
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 5.3e-97 358.2 261 68.2
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 1.2e-96 357.1 269 67.7
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 1.5e-96 356.7 268 69.0
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 1.0e-95 354.0 266 68.8
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 1.3e-95 353.6 267 68.9
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 2.2e-95 352.8 262 67.9
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 2.9e-95 352.4 268 67.2
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 6.5e-95 351.3 264 67.0
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 1.1e-94 350.5 263 68.4
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 1.1e-94 350.5 263 68.1
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 1.4e-94 350.1 263 69.2
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 1.4e-94 350.1 263 69.2
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 1.9e-94 349.7 263 69.2
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 1.9e-94 349.7 264 67.4
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 2.5e-94 349.4 267 67.4
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 4.2e-94 348.6 263 68.4
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 4.2e-94 348.6 267 68.5
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 5.5e-94 348.2 256 69.1
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 7.2e-94 347.8 263 68.4
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 9.4e-94 347.4 263 67.7
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 1.2e-93 347.1 260 69.6
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 2.7e-93 345.9 267 67.4
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 2.7e-93 345.9 257 67.7
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 2.7e-93 345.9 265 66.8
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 4.6e-93 345.1 269 66.2
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 6.1e-93 344.7 263 68.4
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 6.1e-93 344.7 272 65.8
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 1.8e-92 343.2 263 68.8
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 2.3e-92 342.8 255 70.6
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 5.1e-92 341.7 258 67.8
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 5.1e-92 341.7 258 68.2
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 5.1e-92 341.7 264 63.6
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 5.1e-92 341.7 258 65.5
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 8.8e-92 340.9 265 67.9
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 8.8e-92 340.9 265 67.9
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 8.8e-92 340.9 265 67.9
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 1.1e-91 340.5 265 67.2
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 2.5e-91 339.3 258 64.7
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 3.3e-91 339.0 265 66.8
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 5.7e-91 338.2 269 66.2
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 7.4e-91 337.8 256 68.8
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 1.3e-90 337.0 227 70.5
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 1.7e-90 336.7 266 66.9
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.8e-90 335.9 253 68.8
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.8e-90 335.9 253 68.8
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.8e-90 335.9 253 68.4
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.8e-90 335.9 253 68.4
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 3.7e-90 335.5 219 72.1
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 4.8e-90 335.1 253 68.4
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 6.3e-90 334.7 253 68.4
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 1.8e-89 333.2 248 69.0
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 4.1e-89 332.0 248 69.0
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 5.3e-89 331.6 246 69.1
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 5.3e-89 331.6 246 69.1
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 6.9e-89 331.3 253 67.6
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 1.5e-88 330.1 239 71.5
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 3.4e-88 328.9 309 59.5
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 1.7e-87 326.6 233 68.2
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 2.2e-87 326.2 231 70.1
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 1.6e-85 320.1 227 68.7
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 4.4e-83 312.0 220 68.6
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 2.2e-82 309.7 262 61.8
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 4.8e-82 308.5 233 67.8
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 1.1e-81 307.4 258 64.0
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 3.1e-81 305.8 183 80.9
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 1.4e-78 297.0 220 65.0
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 2.5e-78 296.2 217 65.0
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 2.1e-77 293.1 268 61.6
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 3.7e-74 282.3 234 61.1
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 6.1e-69 265.0 197 70.1
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 6.1e-69 265.0 197 70.1
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 3.4e-67 259.2 206 62.6
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 5.9e-64 248.4 190 66.8
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 1.0e-63 247.7 227 55.1
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 2.1e-61 240.0 232 53.4
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 6.1e-61 238.4 173 76.3
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 3.0e-60 236.1 191 56.5
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 4.0e-60 235.7 237 48.9
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 2.6e-59 233.0 180 59.4
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 6.1e-53 211.8 133 78.2
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 8.3e-50 201.4 141 67.4
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 3.2e-41 172.9 153 50.3
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.0e-39 167.9 152 61.2
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 1.5e-38 164.1 115 70.4
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 7.3e-38 161.8 261 40.6
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 7.3e-38 161.8 261 40.6
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 1.2e-37 161.0 261 40.6
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 1.2e-37 161.0 162 44.4
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 1.9e-33 147.1 115 59.1
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 1.7e-26 124.0 89 71.9
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 1.4e-25 120.9 178 35.4
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 2.4e-25 120.2 76 78.9
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.9e-22 110.5 75 69.3
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 1.7e-18 97.4 81 61.7
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 6.6e-15 85.5 170 30.6
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 3.3e-14 83.2 66 62.1
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 7.3e-14 82.0 60 66.7
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 9.6e-14 81.6 87 57.5
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 4.9e-10 69.3 102 41.2
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 8.4e-10 68.6 39 82.1
FvH4_5g19211 Fragaria vesca HOM05D006032 ORTHO05D197553 8.7e-07 58.5 45 66.7
AagrBONN_evm.TU.Sc2ySwM_117.2676 Anthoceros agrestis HOM05D002864 ORTHO05D008485 4.3e-06 56.2 180 27.8
PSO782G4647 Papaver somniferum HOM05D001556 ORTHO05D001505 7.3e-06 55.5 138 30.4


User provided reference genes

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