Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G4667 Erigeron canadensis HOM05D004081 ORTHO05D004935 1.8e-209 732.3 357 100.0
HanXRQChr16g0510231 Helianthus annuus HOM05D004081 ORTHO05D004935 2.5e-174 615.5 346 84.1
Lsat_1_v5_gn_8_105500 Lactuca sativa HOM05D004081 ORTHO05D004935 1.6e-168 596.3 347 83.6
GSVIVG01035653001 Vitis vinifera HOM05D004081 ORTHO05D004935 2.2e-162 575.9 357 77.0
Actinidia31231 Actinidia chinensis HOM05D004081 ORTHO05D004935 1.5e-158 563.1 355 76.6
Nn3g18089 Nelumbo nucifera HOM05D004081 ORTHO05D004935 1.3e-157 560.1 353 75.4
Nitab4.5_0001499g0090 Nicotiana tabacum HOM05D004081 ORTHO05D004935 1.6e-157 559.7 351 76.1
Migut.A00225 Erythranthe guttata HOM05D004081 ORTHO05D004935 4.8e-157 558.1 355 74.1
Nitab4.5_0002411g0020 Nicotiana tabacum HOM05D004081 ORTHO05D004935 5.3e-156 554.7 347 76.4
Peaxi162Scf00090g00194 Petunia axillaris HOM05D004081 ORTHO05D004935 6.9e-156 554.3 356 74.7
PGSC0003DMG400005495 Solanum tuberosum HOM05D004081 ORTHO05D004935 6.9e-156 554.3 358 74.0
Sopen08g022280 Solanum pennellii HOM05D004081 ORTHO05D004935 2.6e-155 552.4 358 73.5
COL.COLO4_18679 Corchorus olitorius HOM05D004081 ORTHO05D004935 3.4e-155 552.0 345 75.4
MSTRG.11708 Avicennia marina HOM05D004081 ORTHO05D004935 7.6e-155 550.8 352 74.4
Sc23g0006000 Simmondsia chinensis HOM05D004081 ORTHO05D004935 7.6e-155 550.8 355 73.2
TAR383G0460 Trochodendron aralioides HOM05D004081 ORTHO05D004935 1.3e-154 550.1 346 76.3
Oeu011271.1 Olea europaea HOM05D004081 ORTHO05D004935 3.8e-154 548.5 375 70.9
Solyc08g068400.4 Solanum lycopersicum HOM05D004081 ORTHO05D004935 3.8e-154 548.5 358 72.9
Thecc.09G041800 Theobroma cacao HOM05D004081 ORTHO05D004935 8.4e-154 547.4 353 73.7
TWI34G1344 Tripterygium wilfordii HOM05D004081 ORTHO05D004935 1.1e-153 547.0 356 74.7
PGR004G0014 Punica granatum HOM05D004081 ORTHO05D004935 1.4e-153 546.6 349 75.9
Prupe.1G451100 Prunus persica HOM05D004081 ORTHO05D004935 1.9e-153 546.2 352 73.6
MD08G1116700 Malus domestica HOM05D004081 ORTHO05D004935 2.4e-153 545.8 348 75.0
Gohir.D06G093900 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.2e-153 545.4 353 73.7
Gorai.010G108400 Gossypium raimondii HOM05D004081 ORTHO05D004935 3.2e-153 545.4 353 73.7
CSS0039336 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 5.4e-153 544.7 346 74.9
Solyc05g041530.3 Solanum lycopersicum HOM05D004081 ORTHO05D004935 9.3e-153 543.9 348 73.6
Sopen05g025590 Solanum pennellii HOM05D004081 ORTHO05D004935 2.1e-152 542.7 348 73.9
Cc08_g09170 Coffea canephora HOM05D004081 ORTHO05D004935 2.7e-152 542.3 350 74.0
Manes.03G062100 Manihot esculenta HOM05D004081 ORTHO05D004935 2.7e-152 542.3 347 74.6
Gohir.D06G094000 Gossypium hirsutum HOM05D004081 ORTHO05D004935 3.5e-152 542.0 355 72.1
Gorai.010G108500 Gossypium raimondii HOM05D004081 ORTHO05D004935 7.9e-152 540.8 355 72.1
Duzib168G0078 Durio zibethinus HOM05D004081 ORTHO05D004935 3.0e-151 538.9 348 74.7
FvH4_2g35900 Fragaria vesca HOM05D004081 ORTHO05D004935 5.1e-151 538.1 348 75.0
FAN27G0952 Fragaria x ananassa HOM05D004081 ORTHO05D004935 5.1e-151 538.1 348 75.0
QL12p029513 Quercus lobata HOM05D004081 ORTHO05D004935 5.1e-151 538.1 354 72.6
PGSC0003DMG400020762 Solanum tuberosum HOM05D004081 ORTHO05D004935 6.6e-151 537.7 372 70.7
vmacro11071 Vaccinium macrocarpon HOM05D004081 ORTHO05D004935 1.5e-150 536.6 346 74.6
Aqoxy7G01585 Aquilegia oxysepala HOM05D004081 ORTHO05D004935 2.5e-150 535.8 349 74.5
Eucgr.E03517 Eucalyptus grandis HOM05D004081 ORTHO05D004935 3.3e-150 535.4 349 73.4
CSS0025305 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 4.3e-150 535.0 346 74.9
RcHm_v2.0_Chr6g0305921 Rosa chinensis HOM05D004081 ORTHO05D004935 7.4e-150 534.3 347 74.4
Duzib150G1044 Durio zibethinus HOM05D004081 ORTHO05D004935 1.3e-149 533.5 353 72.2
AUR62009311 Chenopodium quinoa HOM05D004081 ORTHO05D004935 6.2e-149 531.2 349 73.4
Manes.16G071800 Manihot esculenta HOM05D004081 ORTHO05D004935 8.1e-149 530.8 349 73.1
Potri.006G240600 Populus trichocarpa HOM05D004081 ORTHO05D004935 1.1e-148 530.4 352 72.7
Ah.10g035110 Amaranthus hybridus HOM05D004081 ORTHO05D004935 1.4e-148 530.0 347 73.8
EL10Ac2g04053 Beta vulgaris HOM05D004081 ORTHO05D004935 1.8e-148 529.6 347 74.1
FAN20G0986 Fragaria x ananassa HOM05D004081 ORTHO05D004935 2.4e-148 529.3 347 73.8
Thecc.09G041700 Theobroma cacao HOM05D004081 ORTHO05D004935 2.4e-148 529.3 354 72.0
AUR62029665 Chenopodium quinoa HOM05D004081 ORTHO05D004935 9.0e-148 527.3 349 72.2
Sed0008402 Sechium edule HOM05D004081 ORTHO05D004935 1.2e-147 526.9 346 71.4
SGA_v2.0_scaffold243G44290 Striga asiatica HOM05D004081 ORTHO05D004935 2.6e-147 525.8 329 74.5
MELO3C003456.2 Cucumis melo HOM05D004081 ORTHO05D004935 3.4e-147 525.4 352 70.5
Hund03409 Selenicereus undatus HOM05D004081 ORTHO05D004935 7.6e-147 524.2 420 62.4
Sc06g0000750 Simmondsia chinensis HOM05D004081 ORTHO05D004935 7.6e-147 524.2 344 72.1
Sabra06G0188200 Salix brachista HOM05D004081 ORTHO05D004935 1.7e-146 523.1 362 71.0
PSO566G0156 Papaver somniferum HOM05D004081 ORTHO05D004935 4.9e-146 521.5 346 74.6
PSO782G5115 Papaver somniferum HOM05D004081 ORTHO05D004935 2.4e-145 519.2 358 72.3
Ca_15610_v3 Cicer arietinum L. HOM05D004081 ORTHO05D004935 5.5e-145 518.1 353 70.5
CsaV3_3G048650 Cucumis sativus L. HOM05D004081 ORTHO05D004935 5.5e-145 518.1 352 69.3
Duzib168G2093 Durio zibethinus HOM05D004081 ORTHO05D004935 7.1e-145 517.7 362 69.9
AUR62041725 Chenopodium quinoa HOM05D004081 ORTHO05D004935 3.5e-144 515.4 333 73.3
Cfa013350 Carpinus fangiana HOM05D004081 ORTHO05D004935 3.9e-143 511.9 358 69.3
Lsat_1_v5_gn_8_134220 Lactuca sativa HOM05D004081 ORTHO05D004935 3.9e-143 511.9 328 75.9
Haze_21871 Corylus avellana HOM05D004081 ORTHO05D004935 8.7e-143 510.8 358 69.3
TPR.G1357 Trifolium pratense HOM05D004081 ORTHO05D004935 8.7e-143 510.8 357 69.5
SalBow4G2011 Salvia bowleyana HOM05D004081 ORTHO05D004935 1.5e-142 510.0 364 67.9
Lsat_1_v5_gn_8_104541 Lactuca sativa HOM05D004081 ORTHO05D004935 3.3e-142 508.8 328 75.9
Gohir.A06G094300 Gossypium hirsutum HOM05D004081 ORTHO05D004935 2.8e-141 505.8 346 71.4
Rhsim02G0180500 Rhododendron simsii HOM05D004081 ORTHO05D004935 1.8e-140 503.1 318 75.2
ClCG11G015230 Citrullus lanatus HOM05D004081 ORTHO05D004935 2.4e-140 502.7 377 65.0
Psat5g023440 Pisum sativum HOM05D004081 ORTHO05D004935 2.4e-140 502.7 355 68.5
Glyma.04G081400 Glycine max HOM05D004081 ORTHO05D004935 3.1e-140 502.3 353 68.3
unitig_748.g7994 Utricularia gibba HOM05D004081 ORTHO05D004935 5.3e-140 501.5 354 67.8
Aa31LG11G4780 Aethionema arabicum HOM05D004081 ORTHO05D004935 1.2e-139 500.4 361 67.3
BcaC04g23588 Brassica carinata HOM05D004081 ORTHO05D004935 1.2e-139 500.4 347 67.1
arahy.Tifrunner.gnm1.ann1.QHLN3W Arachis hypogaea HOM05D004081 ORTHO05D004935 2.6e-139 499.2 356 67.4
Os06g0163200 Oryza sativa ssp. japonica HOM05D004081 ORTHO05D004935 4.5e-139 498.4 345 67.8
VMungo1309G1316 Vigna mungo HOM05D004081 ORTHO05D004935 5.8e-139 498.0 348 69.5
CAN.G21.43 Capsicum annuum HOM05D004081 ORTHO05D004935 7.6e-139 497.7 303 76.6
CSS0003690 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 1.0e-138 497.3 303 77.2
Phvul.009G106100 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.7e-138 496.5 352 68.5
BolC9t53593H Brassica oleracea HOM05D004081 ORTHO05D004935 2.9e-138 495.7 346 67.3
Glyma.06G083100 Glycine max HOM05D004081 ORTHO05D004935 3.8e-138 495.4 351 67.8
Lj1g0015510 Lotus japonicus HOM05D004081 ORTHO05D004935 3.8e-138 495.4 355 67.9
CiPaw.07G206000 Carya illinoinensis HOM05D004081 ORTHO05D004935 1.9e-137 493.0 307 75.6
AL6G37640 Arabidopsis lyrata HOM05D002708 ORTHO05D003516 1.6e-136 490.0 345 66.1
BcaB04g19768 Brassica carinata HOM05D004081 ORTHO05D004935 1.6e-136 490.0 347 65.7
arahy.Tifrunner.gnm1.ann1.Y1FCW9 Arachis hypogaea HOM05D004081 ORTHO05D004935 3.5e-136 488.8 372 64.5
BcaC03g17893 Brassica carinata HOM05D004081 ORTHO05D004935 7.9e-136 487.6 347 66.3
BolC2t11999H Brassica oleracea HOM05D004081 ORTHO05D004935 7.9e-136 487.6 347 66.0
BcaB07g29982 Brassica carinata HOM05D004081 ORTHO05D004935 1.3e-135 486.9 356 65.2
THA.LOC104815055 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 1.3e-135 486.9 344 66.9
Thhalv10004493m.g Eutrema salsugineum HOM05D004081 ORTHO05D004935 2.3e-135 486.1 346 66.2
Aa31LG11G4770 Aethionema arabicum HOM05D004081 ORTHO05D004935 6.7e-135 484.6 362 65.5
AT5G25770 Arabidopsis thaliana HOM05D004081 ORTHO05D004935 6.7e-135 484.6 345 65.2
CARHR187640 Cardamine hirsuta HOM05D004081 ORTHO05D004935 6.7e-135 484.6 346 65.9
Glyma.06G083200 Glycine max HOM05D004081 ORTHO05D004935 1.1e-134 483.8 346 67.6
Carub.0006s2355 Capsella rubella HOM05D004081 ORTHO05D004935 7.4e-134 481.1 345 64.9
CSS0038651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.1e-132 475.7 303 74.3
MBI01_g30745_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 4.1e-132 475.3 312 72.8
Sp2g21850 Schrenkiella parvula HOM05D004081 ORTHO05D004935 4.1e-132 475.3 350 64.0
Hma1.2p1_2102F.1_g314030 Hydrangea macrophylla HOM05D004081 ORTHO05D004935 7.6e-131 471.1 276 80.1
Psat5g023320 Pisum sativum HOM05D004081 ORTHO05D004935 7.2e-129 464.5 304 72.0
Lj7A705T29 Lonicera japonica HOM05D004081 ORTHO05D004935 4.6e-128 461.8 315 71.4
Lsat_1_v5_gn_8_104800 Lactuca sativa HOM05D004081 ORTHO05D004935 7.9e-128 461.1 337 68.8
THA.LOC104799704 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 2.3e-127 459.5 345 64.3
BolC2t12002H Brassica oleracea HOM05D004081 ORTHO05D004935 5.7e-126 454.9 330 65.2
CSS0042840 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 2.4e-124 449.5 335 66.9
Lalb_Chr08g0243191 Lupinus albus HOM05D004081 ORTHO05D004935 3.1e-124 449.1 348 64.1
Glyma.06G083000 Glycine max HOM05D004081 ORTHO05D004935 1.2e-123 447.2 321 68.2
Ciclev10009208m.g Citrus clementina HOM05D004081 ORTHO05D004935 4.5e-123 445.3 262 79.0
Rhsim02G0180200 Rhododendron simsii HOM05D001113 ORTHO05D000968 5.3e-116 421.8 328 63.1
Lsat_1_v5_gn_8_104461 Lactuca sativa HOM05D004081 ORTHO05D004935 9.1e-116 421.0 385 59.7
BcaC04g23590 Brassica carinata HOM05D004081 ORTHO05D004935 1.5e-115 420.2 348 60.6
DCAR_004492 Daucus carota HOM05D004081 ORTHO05D004935 4.1e-108 395.6 241 78.8
CAN.G21.42 Capsicum annuum HOM05D004081 ORTHO05D004935 1.0e-106 391.0 246 75.2
BcaC03g17895 Brassica carinata HOM05D004081 ORTHO05D004935 1.3e-106 390.6 477 44.7
Cpa.g.sc7.252 Carica papaya HOM05D004081 ORTHO05D004935 8.5e-106 387.9 244 75.0
A09p06100 Brassica napus HOM05D004081 ORTHO05D004935 1.2e-104 384.0 250 68.8
Actinidia13318 Actinidia chinensis HOM05D004081 ORTHO05D004935 1.4e-103 380.6 221 81.4
Phvul.009G105800 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 2.6e-102 376.3 379 52.0
Gohir.A06G094400 Gossypium hirsutum HOM05D004081 ORTHO05D004935 9.7e-102 374.4 377 52.0
Duzib168G0602 Durio zibethinus HOM05D004081 ORTHO05D004935 1.7e-101 373.6 325 59.1
FAN15G1869 Fragaria x ananassa HOM05D004081 ORTHO05D004935 4.8e-101 372.1 248 72.6
CANSAT25G3157 Cannabis sativa HOM05D004081 ORTHO05D004935 2.9e-98 362.8 239 72.0
Phvul.009G107301 Phaseolus vulgaris HOM05D004081 ORTHO05D004935 1.8e-95 353.6 403 48.1
VMungo0768G0001 Vigna mungo HOM05D004081 ORTHO05D004935 1.8e-95 353.6 379 48.5
BolC2t12001H Brassica oleracea HOM05D004081 ORTHO05D004935 6.8e-95 351.7 295 60.3
SHI18658 Sapria himalayana HOM05D004081 ORTHO05D004935 6.8e-95 351.7 351 52.7
Dinv30265 Davidia involucrata HOM05D004081 ORTHO05D004935 4.4e-94 349.0 213 80.3
HPP92_021511 Vanilla planifolia HOM05D004081 ORTHO05D004935 1.8e-92 343.6 290 60.7
AagrBONN_evm.TU.Sc2ySwM_228.1948 Anthoceros agrestis HOM05D004081 ORTHO05D004935 5.9e-91 338.6 363 48.2
CAN.G21.41 Capsicum annuum HOM05D004081 ORTHO05D004935 6.5e-90 335.1 210 73.8
Zm00001eb271420 Zea mays HOM05D004081 ORTHO05D004935 1.5e-89 334.0 242 64.0
Mapoly0161s0002 Marchantia polymorpha HOM05D004081 ORTHO05D004935 5.2e-87 325.5 298 51.7
CAN.G21.44 Capsicum annuum HOM05D004081 ORTHO05D004935 1.1e-84 317.8 285 57.2
Lsat_1_v5_gn_8_104201 Lactuca sativa HOM05D004081 ORTHO05D004935 1.4e-84 317.4 333 55.0
ATR0315G111 Amborella trichopoda HOM05D004081 ORTHO05D004935 9.5e-81 304.7 229 65.5
Eucgr.L00922 Eucalyptus grandis HOM05D004081 ORTHO05D004935 5.2e-79 298.9 192 75.0
CSS0013583 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.4e-78 296.2 193 74.6
Glyma.04G081600 Glycine max HOM05D004081 ORTHO05D004935 7.0e-76 288.5 193 67.4
SMO089G0019 Selaginella moellendorffii HOM05D004081 ORTHO05D004935 4.6e-75 285.8 274 49.6
ATR0121G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 5.0e-74 282.3 301 51.8
CSS0028651 Camellia sinensis var. sinensis HOM05D004081 ORTHO05D004935 3.1e-71 273.1 193 70.5
THA.LOC104809696 Tarenaya hassleriana HOM05D004081 ORTHO05D004935 7.0e-68 261.9 190 67.4
Atru.chr7.2143 Acer truncatum HOM05D004081 ORTHO05D004935 2.7e-59 233.4 134 80.6
SEGI_32132 Sequoiadendron giganteum HOM05D004081 ORTHO05D004935 1.4e-52 211.1 160 65.0
Hund03408 Selenicereus undatus HOM05D004081 ORTHO05D004935 9.6e-49 198.4 126 70.6
Lsat_1_v5_gn_0_34401 Lactuca sativa HOM05D004081 ORTHO05D004935 5.2e-47 192.6 208 55.3
Atru.chr7.2142 Acer truncatum HOM05D004081 ORTHO05D004935 8.4e-45 185.3 116 79.3
Nitab4.5_0000513g0070 Nicotiana tabacum HOM05D004081 ORTHO05D004935 7.1e-44 182.2 334 37.7
MCO09G062 Micromonas commoda HOM05D004081 ORTHO05D004935 3.9e-42 176.4 344 31.4
Medtr3g110115 Medicago truncatula HOM05D004081 ORTHO05D004935 3.3e-41 173.3 254 43.7
Cre16.g676500 Chlamydomonas reinhardtii HOM05D004081 ORTHO05D004935 4.9e-37 159.5 223 36.8
PRCOL_00003400 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 2.3e-34 150.6 301 28.2
AL6G37600 Arabidopsis lyrata HOM05D004081 ORTHO05D004935 6.7e-34 149.1 156 46.8
BcaB05g25303 Brassica carinata HOM05D004081 ORTHO05D004935 5.6e-33 146.0 89 71.9
PRCOL_00002146 Prasinoderma coloniale HOM05D004081 ORTHO05D004935 1.6e-24 117.9 207 32.4
Oeu014640.1 Olea europaea HOM05D004081 ORTHO05D025646 1.1e-17 95.1 77 61.0
Zm00001eb357480 Zea mays HOM05D002669 ORTHO05D004935 1.4e-15 88.2 69 55.1
HPP92_021483 Vanilla planifolia HOM05D004081 ORTHO05D004935 3.1e-15 87.0 90 50.0
Zm00001eb288810 Zea mays HOM05D002669 ORTHO05D004935 3.1e-15 87.0 69 55.1
Ciclev10010051m.g Citrus clementina HOM05D004081 ORTHO05D004935 4.5e-14 83.2 71 57.7
ATR0241G001 Amborella trichopoda HOM05D004081 ORTHO05D004935 8.5e-13 79.0 67 53.7
Cpa.g.sc7.250 Carica papaya HOM05D002779 ORTHO05D003074 3.2e-12 77.0 49 69.4
PGSC0003DMG400019844 Solanum tuberosum HOM05D004081 ORTHO05D004935 1.3e-10 71.6 40 80.0
ATR0121G013 Amborella trichopoda HOM05D004081 ORTHO05D004935 2.8e-08 63.9 76 47.4
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 2.8e-08 63.9 53 56.6
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 3.1e-07 60.5 53 52.8
Hund03407 Selenicereus undatus HOM05D004081 ORTHO05D025646 7.7e-06 55.8 44 54.5


User provided reference genes

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