Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G4659 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.2e-102 375.6 177 100.0
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 4.4e-63 245.0 152 80.3
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 6.6e-59 231.1 152 78.9
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 1.4e-53 213.4 151 70.9
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 1.4e-48 196.8 153 66.0
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 1.4e-45 186.8 153 64.1
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 1.9e-45 186.4 151 59.6
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 1.9e-45 186.4 150 61.3
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 1.2e-44 183.7 151 58.9
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 2.7e-44 182.6 151 60.3
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 2.3e-43 179.5 155 58.7
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.9e-42 176.4 155 56.1
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 1.9e-42 176.4 152 57.9
ECA236G3386 Erigeron canadensis HOM05D004232 ORTHO05D004909 3.3e-42 175.6 106 81.1
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 5.6e-42 174.9 152 59.9
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 5.6e-42 174.9 152 57.2
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 7.3e-42 174.5 150 56.7
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 9.6e-42 174.1 153 56.9
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 9.6e-42 174.1 151 57.0
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 9.6e-42 174.1 150 57.3
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 2.1e-41 172.9 152 54.6
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 2.8e-41 172.6 151 57.6
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 2.8e-41 172.6 151 58.3
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 4.8e-41 171.8 155 54.8
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 1.1e-40 170.6 151 54.3
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 1.4e-40 170.2 151 55.0
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 1.4e-40 170.2 152 56.6
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 1.8e-40 169.9 152 54.6
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 1.8e-40 169.9 171 50.9
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 5.3e-40 168.3 152 53.3
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 6.9e-40 167.9 150 56.7
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 1.5e-39 166.8 151 56.3
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 1.5e-39 166.8 151 53.0
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 1.5e-39 166.8 169 50.9
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 1.5e-39 166.8 152 57.2
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 2.0e-39 166.4 151 56.3
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 2.0e-39 166.4 170 51.2
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 2.0e-39 166.4 161 51.6
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 2.6e-39 166.0 149 52.3
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 2.6e-39 166.0 152 52.6
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 3.4e-39 165.6 151 53.0
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 3.4e-39 165.6 151 52.3
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 5.8e-39 164.9 147 57.8
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 5.8e-39 164.9 147 57.8
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 7.6e-39 164.5 152 52.6
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 9.9e-39 164.1 170 50.0
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 9.9e-39 164.1 170 50.0
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 1.3e-38 163.7 170 50.0
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 1.3e-38 163.7 170 50.0
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 1.7e-38 163.3 182 48.4
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.7e-38 163.3 152 53.3
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 1.7e-38 163.3 151 53.6
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 3.8e-38 162.2 153 52.9
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 3.8e-38 162.2 174 49.4
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 4.9e-38 161.8 152 53.9
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 4.9e-38 161.8 155 53.5
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 6.4e-38 161.4 151 52.3
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 6.4e-38 161.4 152 53.3
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 8.4e-38 161.0 150 54.0
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 1.1e-37 160.6 153 51.6
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 1.1e-37 160.6 152 53.3
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 1.4e-37 160.2 151 53.6
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 2.4e-37 159.5 152 52.0
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 2.4e-37 159.5 152 52.0
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 2.4e-37 159.5 152 52.0
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 3.2e-37 159.1 143 57.3
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 3.2e-37 159.1 152 52.0
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 7.1e-37 157.9 155 51.0
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 9.3e-37 157.5 156 51.9
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 1.2e-36 157.1 152 53.3
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 1.2e-36 157.1 152 53.9
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 4.6e-36 155.2 152 52.6
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 7.9e-36 154.5 151 52.3
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 7.9e-36 154.5 155 51.6
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 1.0e-35 154.1 159 50.3
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 1.0e-35 154.1 151 53.0
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 1.7e-35 153.3 151 50.3
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 2.3e-35 152.9 151 51.7
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 2.3e-35 152.9 151 47.7
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 2.3e-35 152.9 151 51.0
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 3.9e-35 152.1 145 52.4
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 5.1e-35 151.8 154 52.6
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 6.6e-35 151.4 150 52.0
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 6.6e-35 151.4 154 51.9
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 6.6e-35 151.4 154 51.9
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 6.6e-35 151.4 151 49.7
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 6.6e-35 151.4 145 55.2
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 6.6e-35 151.4 145 55.2
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 8.7e-35 151.0 151 49.0
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 8.7e-35 151.0 155 48.4
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 1.9e-34 149.8 150 48.0
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 2.5e-34 149.4 151 48.3
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 2.5e-34 149.4 155 47.7
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 4.3e-34 148.7 151 48.3
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 4.3e-34 148.7 151 48.3
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 4.3e-34 148.7 151 48.3
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 4.3e-34 148.7 145 53.8
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 9.6e-34 147.5 133 56.4
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.6e-33 146.7 145 53.8
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 2.1e-33 146.4 151 49.7
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 2.1e-33 146.4 151 49.7
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 2.8e-33 146.0 151 47.7
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 3.6e-33 145.6 152 48.0
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 6.2e-33 144.8 155 47.7
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 1.1e-32 144.1 139 54.7
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 1.1e-32 144.1 156 49.4
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 3.1e-32 142.5 152 48.0
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 4.0e-32 142.1 152 48.7
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 4.0e-32 142.1 153 47.1
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 5.3e-32 141.7 160 50.0
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 5.3e-32 141.7 153 46.4
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 9.0e-32 141.0 152 47.4
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 9.0e-32 141.0 152 47.4
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 1.2e-31 140.6 155 46.5
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 4.5e-31 138.7 139 51.8
QL05p007882 Quercus lobata HOM05D004232 ORTHO05D004909 4.5e-31 138.7 139 50.4
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 7.6e-31 137.9 158 49.4
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 3.8e-30 135.6 155 45.2
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 1.1e-29 134.0 151 48.3
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 1.9e-29 133.3 135 51.1
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.6e-28 130.2 169 42.6
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 2.1e-28 129.8 150 44.7
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 3.5e-28 129.0 150 43.3
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 1.3e-27 127.1 137 49.6
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 3.9e-27 125.6 152 43.4
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 5.1e-27 125.2 151 44.4
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 5.6e-26 121.7 103 53.4
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 2.4e-24 116.3 133 45.9
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 1.5e-23 113.6 150 42.0
ATR0629G116 Amborella trichopoda HOM05D004232 ORTHO05D004909 1.0e-22 110.9 116 50.0
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 3.2e-21 105.9 144 43.8
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 4.2e-21 105.5 120 50.0
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 1.2e-20 104.0 116 44.8
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 4.6e-20 102.1 116 44.0
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 6.7e-19 98.2 150 37.3
QL05p008018 Quercus lobata HOM05D000129 ORTHO05D004909 1.5e-18 97.1 100 51.0
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 3.3e-18 95.9 133 39.1
CSS0034823 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 5.7e-18 95.1 81 59.3
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 9.6e-18 94.4 116 43.1
QL05p007856 Quercus lobata HOM05D004232 ORTHO05D004909 1.6e-17 93.6 89 49.4
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 3.1e-16 89.4 144 41.0
QL05p007971 Quercus lobata HOM05D004232 ORTHO05D004909 6.9e-16 88.2 73 57.5
Glyma.17G103833 Glycine max HOM05D004232 ORTHO05D004909 1.6e-12 77.0 148 31.8
MCO04G498 Micromonas commoda HOM05D004232 ORTHO05D004909 8.7e-11 71.2 168 32.7
CARHR069300 Cardamine hirsuta HOM05D004232 ORTHO05D004909 2.2e-09 66.6 64 51.6
VMungo1215G1753 Vigna mungo HOM05D004232 ORTHO05D004909 1.1e-08 64.3 77 45.5


User provided reference genes

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