Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G4439 Erigeron canadensis HOM05D003814 ORTHO05D004399 5.3e-226 787.3 390 100.0
HanXRQChr04g0126041 Helianthus annuus HOM05D003814 ORTHO05D004399 2.7e-60 236.9 343 44.9
Lsat_1_v5_gn_6_92600 Lactuca sativa HOM05D003814 ORTHO05D004399 8.5e-59 231.9 345 43.5
HanXRQChr11g0341161 Helianthus annuus HOM05D003814 ORTHO05D004399 1.2e-57 228.0 331 45.3
HanXRQChr04g0126191 Helianthus annuus HOM05D003814 ORTHO05D004399 1.8e-53 214.2 338 42.9
Lsat_1_v5_gn_8_86340 Lactuca sativa HOM05D003814 ORTHO05D004399 8.8e-48 195.3 255 48.2
Lsat_1_v5_gn_1_71940 Lactuca sativa HOM05D003814 ORTHO05D004399 1.5e-47 194.5 350 39.7
HanXRQChr04g0107941 Helianthus annuus HOM05D003814 ORTHO05D004399 1.9e-42 177.6 229 47.6
ECA236G4104 Erigeron canadensis HOM05D003814 ORTHO05D004399 1.9e-34 151.0 231 41.1
HanXRQChr04g0110661 Helianthus annuus HOM05D003814 ORTHO05D004399 1.2e-33 148.3 281 38.4
Dinv25578 Davidia involucrata HOM05D003814 ORTHO05D004399 8.0e-33 145.6 257 38.5
ECA246G3486 Erigeron canadensis HOM05D003814 ORTHO05D004399 2.9e-30 137.1 302 35.1
Lsat_1_v5_gn_8_83741 Lactuca sativa HOM05D003814 ORTHO05D004399 6.4e-30 136.0 239 36.8
Hma1.2p1_0169F.1_g074710 Hydrangea macrophylla HOM05D003814 ORTHO05D004399 1.1e-29 135.2 252 37.3
Lsat_1_v5_gn_8_99821 Lactuca sativa HOM05D002339 ORTHO05D004399 2.4e-29 134.0 239 36.4
Haze_08071 Corylus avellana HOM05D003814 ORTHO05D004399 5.0e-27 126.3 242 33.1
Thecc.06G118300 Theobroma cacao HOM05D003814 ORTHO05D004399 8.6e-27 125.6 226 32.7
Migut.E01439 Erythranthe guttata HOM05D003814 ORTHO05D004399 5.6e-26 122.9 270 33.0
Ciclev10007128m.g Citrus clementina HOM05D003814 ORTHO05D004399 1.6e-25 121.3 327 30.0
FvH4_1g08170 Fragaria vesca HOM05D003814 ORTHO05D004399 2.8e-25 120.6 237 33.8
FAN19G0873 Fragaria x ananassa HOM05D003814 ORTHO05D004399 2.8e-25 120.6 237 33.8
Manes.04G143500 Manihot esculenta HOM05D003814 ORTHO05D004399 3.6e-25 120.2 255 32.9
TAR624G1373 Trochodendron aralioides HOM05D003814 ORTHO05D004399 6.2e-25 119.4 294 30.6
Nitab4.5_0000073g0260 Nicotiana tabacum HOM05D003814 ORTHO05D004399 1.1e-24 118.6 270 32.6
DCAR_028786 Daucus carota HOM05D003814 ORTHO05D004399 1.8e-24 117.9 247 32.8
Cfa001318 Carpinus fangiana HOM05D003814 ORTHO05D004399 2.3e-24 117.5 318 28.6
TAR636G0432 Trochodendron aralioides HOM05D003814 ORTHO05D004399 2.3e-24 117.5 243 33.3
Thecc.09G080800 Theobroma cacao HOM05D003814 ORTHO05D004399 3.1e-24 117.1 245 34.3
TAR178G0001 Trochodendron aralioides HOM05D003814 ORTHO05D004399 3.1e-24 117.1 271 32.1
Potri.008G038000 Populus trichocarpa HOM05D003814 ORTHO05D004399 1.2e-23 115.2 242 32.6
Prupe.7G202800 Prunus persica HOM05D003814 ORTHO05D004399 1.2e-23 115.2 249 34.9
Cc08_g07160 Coffea canephora HOM05D003814 ORTHO05D004399 2.6e-23 114.0 253 33.6
Duzib187G0024 Durio zibethinus HOM05D003814 ORTHO05D004399 7.5e-23 112.5 334 28.7
FAN26G3410 Fragaria x ananassa HOM05D003814 ORTHO05D004399 1.3e-22 111.7 296 29.4
Haze_11118 Corylus avellana HOM05D003814 ORTHO05D004399 1.7e-22 111.3 237 32.1
TWI53G0525 Tripterygium wilfordii HOM05D003814 ORTHO05D004399 2.2e-22 110.9 238 31.9
Duzib168G0557 Durio zibethinus HOM05D003814 ORTHO05D004399 6.4e-22 109.4 258 32.6
FAN26G2103 Fragaria x ananassa HOM05D003814 ORTHO05D004399 8.3e-22 109.0 296 29.1
CiPaw.01G298600 Carya illinoinensis HOM05D003814 ORTHO05D004399 1.4e-21 108.2 244 32.4
QL05p073999 Quercus lobata HOM05D003814 ORTHO05D004399 4.1e-21 106.7 249 30.9
FAN23G2856 Fragaria x ananassa HOM05D003814 ORTHO05D004399 5.4e-21 106.3 237 31.2
FAN28G0169 Fragaria x ananassa HOM05D003814 ORTHO05D004399 7.1e-21 105.9 237 31.6
Potri.014G187100 Populus trichocarpa HOM05D003814 ORTHO05D004399 7.1e-21 105.9 264 29.9
Peaxi162Scf00928g00024 Petunia axillaris HOM05D003814 ORTHO05D004399 1.6e-20 104.8 274 30.3
RcHm_v2.0_Chr2g0094241 Rosa chinensis HOM05D003814 ORTHO05D004399 2.7e-20 104.0 242 29.8
Potri.010G224400 Populus trichocarpa HOM05D003814 ORTHO05D004399 7.8e-20 102.4 246 30.1
PGR004G0767 Punica granatum HOM05D003814 ORTHO05D004399 7.8e-20 102.4 238 29.0
Sed0024854 Sechium edule HOM05D003814 ORTHO05D004399 1.0e-19 102.1 311 24.8
Potri.008G214000 Populus trichocarpa HOM05D003814 ORTHO05D004399 1.3e-19 101.7 254 29.1
TAR626G0622 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.7e-19 101.3 253 29.2
Gohir.D04G029200 Gossypium hirsutum HOM05D003814 ORTHO05D004399 8.6e-19 99.0 258 31.0
Potri.006G167500 Populus trichocarpa HOM05D003814 ORTHO05D004399 1.1e-18 98.6 262 29.0
ClCG10G017950 Citrullus lanatus HOM05D003814 ORTHO05D004399 1.9e-18 97.8 280 27.9
Potri.017G066400 Populus trichocarpa HOM05D003814 ORTHO05D004399 2.5e-18 97.4 254 28.3
CARHR290110 Cardamine hirsuta HOM05D003814 ORTHO05D004399 3.3e-18 97.1 241 27.8
MD15G1214200 Malus domestica HOM05D003814 ORTHO05D004399 5.6e-18 96.3 262 31.3
Gohir.D04G023700 Gossypium hirsutum HOM05D003814 ORTHO05D004399 9.5e-18 95.5 259 29.0
MD15G1214100 Malus domestica HOM05D003814 ORTHO05D004399 9.5e-18 95.5 160 37.5
CARHR272950 Cardamine hirsuta HOM05D003814 ORTHO05D004399 1.2e-17 95.1 253 25.3
Potri.007G037500 Populus trichocarpa HOM05D003814 ORTHO05D004399 1.2e-17 95.1 246 28.0
TAR374G0716 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.2e-17 95.1 253 28.5
Gorai.012G033100 Gossypium raimondii HOM05D003814 ORTHO05D004399 2.1e-17 94.4 258 30.2
BraA09t37130Z Brassica rapa HOM05D003814 ORTHO05D004399 3.6e-17 93.6 242 29.3
CAN.G625.43 Capsicum annuum HOM05D003814 ORTHO05D004399 6.2e-17 92.8 269 29.4
Gohir.D07G013832 Gossypium hirsutum HOM05D003814 ORTHO05D004399 6.2e-17 92.8 271 27.7
Sp1g34730 Schrenkiella parvula HOM05D003814 ORTHO05D004399 6.2e-17 92.8 234 29.1
A09p14840 Brassica napus HOM05D003814 ORTHO05D004399 1.1e-16 92.0 238 29.0
FAN26G3081 Fragaria x ananassa HOM05D003814 ORTHO05D004399 1.1e-16 92.0 189 31.2
Thhalv10023822m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 1.4e-16 91.7 233 27.0
BcaC04g22552 Brassica carinata HOM05D003814 ORTHO05D004399 1.8e-16 91.3 242 28.9
BolC9t54693H Brassica oleracea HOM05D003814 ORTHO05D004399 1.8e-16 91.3 242 28.9
PGSC0003DMG400041501 Solanum tuberosum HOM05D003814 ORTHO05D004399 1.8e-16 91.3 255 30.2
Thhalv10028265m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 2.3e-16 90.9 244 26.6
Gohir.A07G014200 Gossypium hirsutum HOM05D003814 ORTHO05D004399 2.3e-16 90.9 277 26.0
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 3.1e-16 90.5 203 33.0
BcaB07g31449 Brassica carinata HOM05D003814 ORTHO05D004399 5.2e-16 89.7 239 27.6
C09p17970 Brassica napus HOM05D003814 ORTHO05D004399 5.2e-16 89.7 241 28.6
Gohir.A07G014250 Gossypium hirsutum HOM05D003814 ORTHO05D004399 5.2e-16 89.7 277 26.0
A04p14880 Brassica napus HOM05D003814 ORTHO05D004399 6.8e-16 89.4 243 26.3
BraA04t17126Z Brassica rapa HOM05D003814 ORTHO05D004399 6.8e-16 89.4 243 26.3
AL2G10680 Arabidopsis lyrata HOM05D003814 ORTHO05D004399 8.9e-16 89.0 240 27.5
Haze_11119 Corylus avellana HOM05D003814 ORTHO05D004399 8.9e-16 89.0 180 32.2
Aqoxy5G02065 Aquilegia oxysepala HOM05D003814 ORTHO05D004399 1.2e-15 88.6 297 29.0
Gohir.D04G024036 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.2e-15 88.6 154 38.3
unitig_22.g5424 Utricularia gibba HOM05D003814 ORTHO05D004399 1.2e-15 88.6 235 32.3
Gorai.001G014600 Gossypium raimondii HOM05D003814 ORTHO05D004399 1.5e-15 88.2 271 26.9
BraA09t37073Z Brassica rapa HOM05D003814 ORTHO05D004399 2.6e-15 87.4 237 26.2
BcaB07g31514 Brassica carinata HOM05D003814 ORTHO05D004399 4.4e-15 86.7 238 26.9
Gohir.A05G386550 Gossypium hirsutum HOM05D003814 ORTHO05D004399 5.8e-15 86.3 251 28.3
Prupe.7G202900 Prunus persica HOM05D003814 ORTHO05D004399 5.8e-15 86.3 262 29.4
FAN28G0704 Fragaria x ananassa HOM05D003814 ORTHO05D004399 7.6e-15 85.9 193 29.5
Lsat_1_v5_gn_2_42360 Lactuca sativa HOM05D003814 ORTHO05D004399 7.6e-15 85.9 157 34.4
PSO478G3480 Papaver somniferum HOM05D003814 ORTHO05D004399 7.6e-15 85.9 292 26.7
Carub.0002s0052 Capsella rubella HOM05D003814 ORTHO05D004399 9.9e-15 85.5 241 27.4
Gorai.003G018500 Gossypium raimondii HOM05D003814 ORTHO05D004399 9.9e-15 85.5 251 27.5
Gohir.D03G018133 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.3e-14 85.1 251 27.5
CsaV3_3G038340 Cucumis sativus L. HOM05D003814 ORTHO05D004399 1.7e-14 84.7 244 29.5
Thhalv10028201m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 1.7e-14 84.7 220 27.3
Carub.0007s3375 Capsella rubella HOM05D003814 ORTHO05D004399 2.2e-14 84.3 242 26.9
SGA_v2.0_scaffold4G02155 Striga asiatica HOM05D003814 ORTHO05D004399 2.2e-14 84.3 254 28.3
AL2G10650 Arabidopsis lyrata HOM05D003814 ORTHO05D004399 2.9e-14 84.0 236 24.2
CiPaw.04G145600 Carya illinoinensis HOM05D003814 ORTHO05D004399 2.9e-14 84.0 151 32.5
CARHR050300 Cardamine hirsuta HOM05D003814 ORTHO05D004399 3.8e-14 83.6 236 26.7
PGR004G1882 Punica granatum HOM05D003814 ORTHO05D004399 4.9e-14 83.2 252 24.6
Nitab4.5_0000343g0080 Nicotiana tabacum HOM05D003814 ORTHO05D004399 6.4e-14 82.8 262 26.3
Peaxi162Scf00047g10141 Petunia axillaris HOM05D003814 ORTHO05D004399 1.4e-13 81.6 156 32.7
QL03p008482 Quercus lobata HOM05D003814 ORTHO05D004399 1.9e-13 81.3 151 32.5
Zm00001eb202740 Zea mays HOM05D003814 ORTHO05D004399 1.9e-13 81.3 244 30.3
Carub.0007s3374 Capsella rubella HOM05D003814 ORTHO05D004399 2.4e-13 80.9 244 24.6
Haze_11116 Corylus avellana HOM05D003054 ORTHO05D003376 2.4e-13 80.9 230 28.3
Carub.0002s0053 Capsella rubella HOM05D003814 ORTHO05D004399 3.2e-13 80.5 240 27.5
FAN23G1165 Fragaria x ananassa HOM05D003814 ORTHO05D004399 5.4e-13 79.7 180 28.9
A09p14250 Brassica napus HOM05D002195 ORTHO05D002898 9.2e-13 79.0 163 31.9
PSO170G6690 Papaver somniferum HOM05D003814 ORTHO05D004399 9.2e-13 79.0 191 33.5
Gohir.A02G162300 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.2e-12 78.6 252 25.4
COL.COLO4_18129 Corchorus olitorius HOM05D003814 ORTHO05D004399 1.6e-12 78.2 171 28.1
Sp1g34780 Schrenkiella parvula HOM05D003814 ORTHO05D004399 1.6e-12 78.2 234 26.5
Carub.0007s3376 Capsella rubella HOM05D003814 ORTHO05D004399 2.1e-12 77.8 285 27.7
Peaxi162Scf00067g00233 Petunia axillaris HOM05D003814 ORTHO05D004399 2.1e-12 77.8 213 32.9
ClCG10G017770 Citrullus lanatus HOM05D003814 ORTHO05D004399 2.7e-12 77.4 240 28.3
PGSC0003DMG400037022 Solanum tuberosum HOM05D003814 ORTHO05D004399 2.7e-12 77.4 169 33.7
Lsat_1_v5_gn_4_158900 Lactuca sativa HOM05D003814 ORTHO05D004399 3.5e-12 77.0 157 35.7
PGSC0003DMG400046351 Solanum tuberosum HOM05D003814 ORTHO05D004399 3.5e-12 77.0 173 28.9
BcaC04g22634 Brassica carinata HOM05D003814 ORTHO05D004399 4.6e-12 76.6 219 25.6
AT1G64295 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 6.0e-12 76.3 236 23.7
FvH4_1g08161 Fragaria vesca HOM05D003814 ORTHO05D004399 7.8e-12 75.9 125 33.6
Lsat_1_v5_gn_5_64781 Lactuca sativa HOM05D003814 ORTHO05D004399 1.0e-11 75.5 127 35.4
Sabra10G0173600 Salix brachista HOM05D001546 ORTHO05D004399 1.0e-11 75.5 159 32.7
Sp1g34880 Schrenkiella parvula HOM05D003814 ORTHO05D004399 1.0e-11 75.5 166 31.3
PGSC0003DMG400035508 Solanum tuberosum HOM05D003814 ORTHO05D004399 1.0e-11 75.5 143 34.3
AT1G64290 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 1.7e-11 74.7 252 24.6
Aa31LG2G1300 Aethionema arabicum HOM05D003814 ORTHO05D004399 3.0e-11 73.9 232 24.6
Potri.001G462650 Populus trichocarpa HOM05D003814 ORTHO05D004399 3.9e-11 73.6 216 26.4
SpUn1086_0010 Schrenkiella parvula HOM05D003814 ORTHO05D004399 5.1e-11 73.2 174 29.3
MELO3C009576.2 Cucumis melo HOM05D003814 ORTHO05D004399 6.6e-11 72.8 242 27.3
Sabra16G0039400 Salix brachista HOM05D003814 ORTHO05D004399 1.9e-10 71.2 159 32.1
SalBow1G2869 Salvia bowleyana HOM05D001856 ORTHO05D001959 2.5e-10 70.9 181 34.8
TAR624G1176 Trochodendron aralioides HOM05D003814 ORTHO05D004399 2.5e-10 70.9 120 35.0
Lsat_1_v5_gn_7_15380 Lactuca sativa HOM05D003814 ORTHO05D004399 5.6e-10 69.7 136 33.8
Psat4g001840 Pisum sativum HOM05D002420 ORTHO05D002422 9.6e-10 68.9 349 24.1
ATR0580G250 Amborella trichopoda HOM05D007162 ORTHO05D007631 2.1e-09 67.8 175 30.3
SHI03051 Sapria himalayana HOM05D003814 ORTHO05D004399 2.8e-09 67.4 255 25.1
PSO170G5919 Papaver somniferum HOM05D003814 ORTHO05D004399 8.1e-09 65.9 261 25.3
C09p17160 Brassica napus HOM05D002195 ORTHO05D002898 1.1e-08 65.5 140 30.0
BolC9t54614H Brassica oleracea HOM05D002195 ORTHO05D002898 1.1e-08 65.5 140 30.0
Migut.E01447 Erythranthe guttata HOM05D003814 ORTHO05D004399 1.1e-08 65.5 101 38.6
FAN26G2210 Fragaria x ananassa HOM05D003814 ORTHO05D004399 1.4e-08 65.1 114 33.3
Lj4g0009025 Lotus japonicus HOM05D002420 ORTHO05D002422 5.2e-08 63.2 250 25.2
TAR636G1188 Trochodendron aralioides HOM05D003814 ORTHO05D004399 6.9e-08 62.8 76 42.1
PSO782G0050 Papaver somniferum HOM05D003814 ORTHO05D004399 8.9e-08 62.4 299 22.7
PSO782G3287 Papaver somniferum HOM05D003814 ORTHO05D004399 1.5e-07 61.6 293 25.9
PSO210G1123 Papaver somniferum HOM05D003814 ORTHO05D004399 3.4e-07 60.5 244 27.0
Sp7g03960 Schrenkiella parvula HOM05D003814 ORTHO05D004399 4.4e-07 60.1 237 23.6
AT2G05360 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 5.8e-07 59.7 155 29.7


User provided reference genes

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