Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G4418 Erigeron canadensis HOM05D005968 ORTHO05D007158 3.1e-192 674.9 316 100.0
HanXRQChr09g0245781 Helianthus annuus HOM05D005968 ORTHO05D007158 6.9e-176 620.5 313 92.0
Prupe.7G263000 Prunus persica HOM05D005968 ORTHO05D007158 8.7e-171 603.6 309 89.6
Dinv41378 Davidia involucrata HOM05D005968 ORTHO05D007158 1.5e-170 602.8 305 89.8
Gorai.004G291800 Gossypium raimondii HOM05D005968 ORTHO05D007158 3.3e-170 601.7 313 87.2
CSS0021374 Camellia sinensis var. sinensis HOM05D005968 ORTHO05D007158 7.4e-170 600.5 305 90.2
Gohir.D08G273400 Gossypium hirsutum HOM05D005968 ORTHO05D007158 2.8e-169 598.6 313 86.6
Manes.14G143600 Manihot esculenta HOM05D005968 ORTHO05D007158 6.3e-169 597.4 310 87.4
Duzib187G1838 Durio zibethinus HOM05D005968 ORTHO05D007158 2.4e-168 595.5 310 87.4
Thecc.09G030600 Theobroma cacao HOM05D005968 ORTHO05D007158 9.0e-168 593.6 305 88.2
Potri.006G184300 Populus trichocarpa HOM05D005968 ORTHO05D007158 1.2e-167 593.2 310 86.5
Glyma.02G204100 Glycine max HOM05D005968 ORTHO05D007158 1.5e-167 592.8 309 87.4
Atru.chr7.47_Atru.chr7.48 Acer truncatum HOM05D005968 ORTHO05D007158 5.9e-167 590.9 311 87.1
Lsat_1_v5_gn_8_63401 Lactuca sativa HOM05D005968 ORTHO05D007158 5.9e-167 590.9 313 88.2
CiPaw.15G168400 Carya illinoinensis HOM05D005968 ORTHO05D007158 1.7e-166 589.3 309 86.4
Dinv42854 Davidia involucrata HOM05D005968 ORTHO05D007158 1.7e-166 589.3 305 88.2
Glyma.17G073700 Glycine max HOM05D005968 ORTHO05D007158 1.7e-166 589.3 309 87.1
Hma1.2p1_0222F.1_g093590 Hydrangea macrophylla HOM05D005968 ORTHO05D007158 1.7e-166 589.3 310 87.1
Nn8g39893 Nelumbo nucifera HOM05D005968 ORTHO05D007158 1.7e-166 589.3 305 88.2
Gohir.A08G251800 Gossypium hirsutum HOM05D005968 ORTHO05D007158 2.2e-166 589.0 305 87.9
CANSAT11G2689 Cannabis sativa HOM05D005968 ORTHO05D007158 2.9e-166 588.6 309 86.1
PSO561G0082 Papaver somniferum HOM05D005968 ORTHO05D007158 5.0e-166 587.8 312 85.6
PSO111G0029 Papaver somniferum HOM05D005968 ORTHO05D007158 8.5e-166 587.0 312 85.6
Ciclev10008980m.g Citrus clementina HOM05D005968 ORTHO05D007158 2.5e-165 585.5 305 86.9
Lj4g0027447 Lotus japonicus HOM05D005968 ORTHO05D007158 4.2e-165 584.7 309 86.4
PGSC0003DMG400011184 Solanum tuberosum HOM05D005968 ORTHO05D007158 9.4e-165 583.6 306 86.6
Migut.K00326 Erythranthe guttata HOM05D005968 ORTHO05D007158 2.7e-164 582.0 308 85.4
DCAR_019393 Daucus carota HOM05D005968 ORTHO05D007158 1.4e-163 579.7 305 85.6
FvH4_1g00920 Fragaria vesca HOM05D005968 ORTHO05D007158 3.9e-163 578.2 305 86.6
CiPaw.16G111000 Carya illinoinensis HOM05D005968 ORTHO05D007158 5.1e-163 577.8 303 85.8
Eucgr.C02493 Eucalyptus grandis HOM05D005968 ORTHO05D007158 6.7e-163 577.4 309 84.8
Potri.018G106700 Populus trichocarpa HOM05D005968 ORTHO05D007158 4.3e-162 574.7 310 83.9
THA.LOC104803560 Tarenaya hassleriana HOM05D005968 ORTHO05D007158 3.7e-161 571.6 305 84.9
Aqoxy2G01962_Aqoxy2G01963 Aquilegia oxysepala HOM05D005968 ORTHO05D007158 4.8e-161 571.2 312 84.6
QL02p093270 Quercus lobata HOM05D005968 ORTHO05D007158 1.1e-160 570.1 311 83.9
Nn2g12378 Nelumbo nucifera HOM05D005968 ORTHO05D007158 3.1e-160 568.5 308 84.4
Sed0018428 Sechium edule HOM05D005968 ORTHO05D007158 7.7e-159 563.9 303 84.8
Sp7g28770 Schrenkiella parvula HOM05D005968 ORTHO05D007158 1.0e-158 563.5 306 83.0
AL7G21190 Arabidopsis lyrata HOM05D005968 ORTHO05D007158 2.9e-158 562.0 317 80.8
EL10Ac8g18668 Beta vulgaris HOM05D005968 ORTHO05D007158 2.9e-158 562.0 311 83.0
SalBow1G6433 Salvia bowleyana HOM05D005968 ORTHO05D007158 3.8e-158 561.6 305 84.6
Carub.0007s0964 Capsella rubella HOM05D005968 ORTHO05D007158 5.0e-158 561.2 306 83.0
Thhalv10025727m.g Eutrema salsugineum HOM05D005968 ORTHO05D007158 5.0e-158 561.2 318 80.5
FAN23G3092 Fragaria x ananassa HOM05D005968 ORTHO05D007158 5.0e-158 561.2 305 84.6
CARHR238800 Cardamine hirsuta HOM05D005968 ORTHO05D007158 1.1e-157 560.1 305 83.0
MD15G1144700 Malus domestica HOM05D005968 ORTHO05D007158 1.2e-156 556.6 308 84.1
MD02G1007400 Malus domestica HOM05D005968 ORTHO05D007158 1.6e-156 556.2 309 83.2
AT4G30900 Arabidopsis thaliana HOM05D005968 ORTHO05D007158 2.7e-156 555.4 306 82.4
arahy.Tifrunner.gnm1.ann1.D6JQQQ Arachis hypogaea HOM05D005968 ORTHO05D007158 3.0e-155 552.0 309 83.2
Zm00001eb086780 Zea mays HOM05D005968 ORTHO05D007158 3.0e-155 552.0 305 82.3
Zm00001eb420110 Zea mays HOM05D005968 ORTHO05D007158 4.4e-154 548.1 305 81.3
TAR626G1902 Trochodendron aralioides HOM05D005968 ORTHO05D007158 7.4e-154 547.4 302 83.4
BcaC09g51877 Brassica carinata HOM05D005968 ORTHO05D007158 1.7e-153 546.2 311 81.0
A01p07280 Brassica napus HOM05D005968 ORTHO05D007158 1.7e-153 546.2 311 81.0
BraA01t00677Z Brassica rapa HOM05D005968 ORTHO05D007158 1.7e-153 546.2 311 81.0
BolC1t00793H Brassica oleracea HOM05D005968 ORTHO05D007158 3.7e-153 545.0 311 80.7
Lj7A459G65 Lonicera japonica HOM05D005968 ORTHO05D007158 4.8e-153 544.7 305 83.3
C01p08040 Brassica napus HOM05D005968 ORTHO05D007158 1.4e-152 543.1 311 80.7
BcaNung03430 Brassica carinata HOM05D005968 ORTHO05D007158 5.3e-152 541.2 306 80.1
Ca_21128_v3 Cicer arietinum L. HOM05D005968 ORTHO05D007158 3.8e-150 535.0 309 80.6
FAN26G1763 Fragaria x ananassa HOM05D005968 ORTHO05D007158 6.5e-150 534.3 305 81.6
Psat0s2403g0360 Pisum sativum HOM05D005968 ORTHO05D007158 8.5e-150 533.9 301 82.1
DCAR_017911 Daucus carota HOM05D005968 ORTHO05D007158 5.5e-149 531.2 311 78.8
Peaxi162Scf00401g00718 Petunia axillaris HOM05D005968 ORTHO05D007158 2.1e-148 529.3 306 81.0
VMungo1215G2113 Vigna mungo HOM05D005968 ORTHO05D007158 3.9e-147 525.0 309 79.0
Cfa020826 Carpinus fangiana HOM05D002374 ORTHO05D003594 1.5e-146 523.1 297 81.5
Sabra06G0140100 Salix brachista HOM05D005968 ORTHO05D007158 1.5e-146 523.1 413 63.9
Sabra18G0090900 Salix brachista HOM05D005968 ORTHO05D007158 4.4e-146 521.5 362 69.1
Phvul.003G156000 Phaseolus vulgaris HOM05D005968 ORTHO05D007158 8.5e-142 507.3 273 85.7
Actinidia38673 Actinidia chinensis HOM05D005968 ORTHO05D007158 5.5e-141 504.6 265 87.5
SEGI_19747 Sequoiadendron giganteum HOM05D005968 ORTHO05D007158 3.6e-140 501.9 305 74.4
PGR102G1528 Punica granatum HOM05D005968 ORTHO05D007158 6.1e-140 501.1 263 87.5
COL.COLO4_18810 Corchorus olitorius HOM05D000238 ORTHO05D007158 1.3e-134 483.4 293 76.8
ATR0739G020 Amborella trichopoda HOM05D005968 ORTHO05D007158 5.7e-130 468.0 303 71.9
unitig_52.g17565 Utricularia gibba HOM05D005968 ORTHO05D007158 7.5e-130 467.6 327 67.9
TWI34G0179 Tripterygium wilfordii HOM05D005968 ORTHO05D007158 2.7e-127 459.1 310 70.3
AUR62029822 Chenopodium quinoa HOM05D005968 ORTHO05D007158 3.3e-125 452.2 264 79.2
CsaV3_1G028970 Cucumis sativus L. HOM05D005968 ORTHO05D007158 1.8e-120 436.4 303 69.0
AUR62006466 Chenopodium quinoa HOM05D005968 ORTHO05D007158 7.0e-120 434.5 250 80.0
Mapoly0088s0077 Marchantia polymorpha HOM05D005968 ORTHO05D007158 2.0e-119 433.0 302 62.6
SGA_v2.0_scaffold347G49545 Striga asiatica HOM05D005968 ORTHO05D007158 4.4e-114 415.2 338 60.9
Lsat_1_v5_gn_7_66900 Lactuca sativa HOM05D005968 ORTHO05D007158 7.5e-106 387.9 277 69.0
Nitab4.5_0003623g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 1.8e-99 366.7 306 61.1
Nitab4.5_0009876g0020 Nicotiana tabacum HOM05D005968 ORTHO05D007158 9.9e-98 360.9 183 89.1
Lsat_1_v5_gn_4_18721 Lactuca sativa HOM05D005968 ORTHO05D007158 7.8e-95 351.3 187 84.5
Oeu038140.1 Olea europaea HOM05D005968 ORTHO05D007158 2.2e-89 333.2 162 93.2
GSVIVG01023606001 Vitis vinifera HOM05D005968 ORTHO05D007158 8.4e-89 331.3 166 89.8
RcHm_v2.0_Chr2g0085611 Rosa chinensis HOM05D005968 ORTHO05D007158 1.4e-88 330.5 166 89.8
Lalb_Chr12g0198711 Lupinus albus HOM05D005968 ORTHO05D007158 2.4e-88 329.7 166 89.8
TPR.G24830 Trifolium pratense HOM05D005968 ORTHO05D007158 1.6e-87 327.0 166 88.6
CiPaw.15G168700 Carya illinoinensis HOM05D005968 ORTHO05D007158 2.7e-87 326.2 186 81.7
Cpa.g.sc46.157 Carica papaya HOM05D005968 ORTHO05D007158 7.8e-87 324.7 162 88.9
CAN.G160.61 Capsicum annuum HOM05D005968 ORTHO05D007158 1.0e-86 324.3 163 89.6
FAN28G0447 Fragaria x ananassa HOM05D005968 ORTHO05D007158 1.0e-86 324.3 162 90.1
Cc06_g14950 Coffea canephora HOM05D005968 ORTHO05D007158 1.7e-86 323.6 162 91.4
Eucgr.C02540 Eucalyptus grandis HOM05D005968 ORTHO05D007158 3.3e-85 319.3 166 86.1
Medtr4g130830 Medicago truncatula HOM05D005968 ORTHO05D007158 3.3e-85 319.3 166 87.3
MSTRG.26272 Avicennia marina HOM05D005968 ORTHO05D007158 5.6e-85 318.5 162 87.7
Sc17g0006690 Simmondsia chinensis HOM05D005968 ORTHO05D007158 5.6e-85 318.5 161 90.1
Sopen07g001720 Solanum pennellii HOM05D005968 ORTHO05D007158 7.3e-85 318.2 168 86.3
AagrBONN_evm.TU.Sc2ySwM_362.192 Anthoceros agrestis HOM05D005968 ORTHO05D007158 7.8e-79 298.1 244 55.7
vmacro06082 Vaccinium macrocarpon HOM05D005968 ORTHO05D007158 3.9e-78 295.8 179 77.1
Haze_19205 Corylus avellana HOM05D005968 ORTHO05D007158 4.6e-71 272.3 142 87.3
Cc06_g14960 Coffea canephora HOM05D005968 ORTHO05D007158 3.7e-60 236.1 123 86.2
Solyc07g005620.2 Solanum lycopersicum HOM05D005968 ORTHO05D007158 9.0e-59 231.5 123 85.4
Sopen07g001730 Solanum pennellii HOM05D005968 ORTHO05D007158 9.0e-59 231.5 123 85.4
Lalb_Chr12g0198701 Lupinus albus HOM05D005968 ORTHO05D007158 2.2e-57 226.9 123 82.9
GSVIVG01023605001 Vitis vinifera HOM05D005968 ORTHO05D007158 6.5e-57 225.3 123 82.9
RhsimUnG0158300 Rhododendron simsii HOM05D005968 ORTHO05D001263 8.4e-57 224.9 122 82.0
Dinv43246 Davidia involucrata HOM05D005968 ORTHO05D007158 1.1e-56 224.6 122 84.4
Oeu038141.1 Olea europaea HOM05D005968 ORTHO05D007158 1.4e-56 224.2 123 82.1
TPR.G24874 Trifolium pratense HOM05D005968 ORTHO05D007158 1.4e-56 224.2 123 80.5
Medtr4g130840 Medicago truncatula HOM05D005968 ORTHO05D007158 1.6e-55 220.7 123 78.9
RcHm_v2.0_Chr2g0085621 Rosa chinensis HOM05D005968 ORTHO05D007158 3.5e-55 219.5 122 79.5
TAR636G1721 Trochodendron aralioides HOM05D005968 ORTHO05D007158 6.7e-54 215.3 108 88.0
ClCG06G012410 Citrullus lanatus HOM05D005968 ORTHO05D007158 1.5e-53 214.2 123 78.9
MELO3C010224.2 Cucumis melo HOM05D005968 ORTHO05D007158 2.5e-53 213.4 123 78.9
Os05g0279600 Oryza sativa ssp. japonica HOM05D005968 ORTHO05D007158 4.8e-52 209.1 124 75.0
HPP92_004698 Vanilla planifolia HOM05D005968 ORTHO05D007158 8.2e-52 208.4 124 79.0
Aa31LG2G19470 Aethionema arabicum HOM05D005968 ORTHO05D007158 4.5e-50 202.6 117 77.8
HPP92_004697 Vanilla planifolia HOM05D005968 ORTHO05D007158 5.0e-49 199.1 104 84.6
Cpa.g.sc46.156 Carica papaya HOM05D005968 ORTHO05D007158 4.2e-48 196.1 143 66.4
arahy.Tifrunner.gnm1.ann1.4WLG0J Arachis hypogaea HOM05D005968 ORTHO05D007158 7.0e-35 152.1 243 37.9
arahy.Tifrunner.gnm1.ann1.HW7BNQ Arachis hypogaea HOM05D005968 ORTHO05D007158 1.9e-32 144.1 69 94.2
CDE04G1812 Ceratophyllum demersum HOM05D005968 ORTHO05D007158 9.4e-32 141.7 89 66.3
Lsat_1_v5_gn_4_18741 Lactuca sativa HOM05D005968 ORTHO05D007158 2.7e-31 140.2 79 81.0
TAR636G0142 Trochodendron aralioides HOM05D002374 ORTHO05D003594 7.4e-29 132.1 77 77.9
Nitab4.5_0006121g0010 Nicotiana tabacum HOM05D005968 ORTHO05D007158 1.1e-27 128.3 69 87.0
Eucgr.C02541 Eucalyptus grandis HOM05D005968 ORTHO05D007158 8.8e-22 108.6 71 73.2
SHI23672 Sapria himalayana HOM05D005968 ORTHO05D007158 3.5e-18 96.7 52 78.8
arahy.Tifrunner.gnm1.ann1.QXT71M Arachis hypogaea HOM05D005968 ORTHO05D007158 1.5e-13 81.3 46 76.1
arahy.Tifrunner.gnm1.ann1.VCSM30 Arachis hypogaea HOM05D005968 ORTHO05D007158 2.0e-13 80.9 47 74.5
Haze_19213 Corylus avellana HOM05D000344 ORTHO05D005296 3.1e-11 73.6 34 94.1
Oeu038782.2 Olea europaea HOM05D005968 ORTHO05D007158 7.7e-10 68.9 46 71.7
arahy.Tifrunner.gnm1.ann1.HGKJ8P Arachis hypogaea HOM05D005968 ORTHO05D007158 5.0e-09 66.2 40 70.0


User provided reference genes

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