Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 2.0e-127 459.5 317 100.0
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 6.2e-116 421.4 305 96.4
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 3.5e-111 405.6 317 87.7
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 7.8e-111 404.4 318 88.1
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 7.8e-111 404.4 317 87.4
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 3.9e-110 402.1 315 87.3
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 2.5e-109 399.4 315 86.7
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 2.5e-109 399.4 315 86.7
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 4.3e-109 398.7 320 86.6
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 7.3e-109 397.9 317 90.5
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 9.5e-109 397.5 319 85.9
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 1.2e-108 397.1 315 86.3
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 1.2e-108 397.1 325 85.2
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 1.6e-108 396.7 319 85.3
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 6.2e-108 394.8 327 84.7
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 8.1e-108 394.4 318 86.8
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 4.0e-107 392.1 325 84.0
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 5.2e-107 391.7 319 84.0
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 4.4e-106 388.7 317 85.2
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 9.9e-106 387.5 318 84.6
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 1.7e-105 386.7 318 84.3
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 2.2e-105 386.3 316 84.5
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 3.8e-105 385.6 318 84.6
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.0e-102 377.5 307 85.3
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 1.3e-102 377.1 307 85.3
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.2e-100 370.5 309 84.8
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 1.2e-100 370.5 317 82.0
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 2.6e-98 362.8 317 82.3
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 2.2e-97 359.8 315 82.9
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 3.8e-97 359.0 316 81.6
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 2.4e-96 356.3 317 83.9
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 1.1e-93 347.4 318 82.7
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 9.6e-93 344.4 316 79.1
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 2.4e-91 339.7 319 79.6
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 1.2e-90 337.4 315 80.0
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 2.6e-90 336.3 315 80.0
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 4.5e-90 335.5 278 88.8
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 5.8e-90 335.1 316 78.5
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 4.2e-88 328.9 319 79.0
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 2.1e-87 326.6 304 83.9
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 8.7e-86 321.2 316 77.2
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 2.8e-84 316.2 317 76.3
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 2.0e-82 310.1 316 75.6
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 3.4e-82 309.3 316 75.6
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 8.4e-81 304.7 316 74.7
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 8.4e-81 304.7 315 74.9
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 7.9e-79 298.1 316 74.4
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 1.3e-78 297.4 278 80.6
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 7.4e-77 291.6 316 73.1
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 1.5e-74 283.9 249 90.4
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 7.6e-74 281.6 315 73.3
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 6.5e-73 278.5 247 90.7
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 8.4e-73 278.1 305 72.5
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 1.9e-72 276.9 247 90.3
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 1.9e-72 276.9 247 90.3
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 2.5e-72 276.6 242 93.4
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 5.5e-72 275.4 248 89.9
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 7.1e-72 275.0 317 71.0
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 7.1e-72 275.0 242 92.6
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 9.3e-72 274.6 248 90.7
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 4.6e-71 272.3 257 85.6
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 4.6e-71 272.3 257 85.6
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 6.0e-71 271.9 248 89.1
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 7.9e-71 271.6 314 67.2
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 7.9e-71 271.6 254 87.0
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 8.7e-70 268.1 248 87.1
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 8.7e-70 268.1 242 91.7
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 1.1e-69 267.7 255 85.9
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 2.5e-69 266.5 248 86.7
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 2.5e-69 266.5 319 70.5
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 4.3e-69 265.8 253 87.0
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 2.8e-68 263.1 248 86.7
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 3.7e-68 262.7 254 84.3
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 4.8e-68 262.3 254 84.6
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 8.2e-68 261.5 253 84.6
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 1.8e-67 260.4 254 84.3
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 1.8e-67 260.4 141 85.1
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 3.1e-67 259.6 247 85.4
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 4.1e-67 259.2 319 69.6
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 1.5e-66 257.3 248 85.9
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 3.4e-66 256.1 248 85.5
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 7.6e-66 255.0 143 83.9
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 5.0e-65 252.3 248 84.3
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 5.0e-65 252.3 248 84.3
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 6.5e-65 251.9 248 83.9
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 6.5e-65 251.9 316 66.8
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 1.1e-64 251.1 248 84.3
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 1.1e-64 251.1 248 84.3
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 1.1e-64 251.1 248 84.3
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 1.9e-64 250.4 143 82.5
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 2.5e-64 250.0 248 83.9
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 3.2e-64 249.6 248 83.5
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.6e-63 247.3 141 79.4
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.6e-63 247.3 141 79.4
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 1.6e-63 247.3 142 78.9
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 2.1e-63 246.9 142 78.9
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 2.7e-63 246.5 146 78.8
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 3.6e-63 246.1 141 78.7
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 1.0e-62 244.6 141 76.6
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 1.3e-62 244.2 250 80.0
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 2.5e-61 240.0 141 78.7
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 2.5e-61 240.0 141 78.0
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 3.3e-61 239.6 142 76.1
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.3e-60 237.7 141 77.3
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 2.8e-60 236.5 316 65.2
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 1.4e-59 234.2 142 74.6
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 1.8e-59 233.8 316 64.2
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 2.4e-59 233.4 142 74.6
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 3.1e-59 233.0 142 73.9
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 3.1e-59 233.0 142 73.9
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 7.7e-58 228.4 330 54.2
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 5.0e-57 225.7 142 71.1
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 2.0e-53 213.8 316 63.0
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 9.1e-51 204.9 208 80.8
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 2.9e-49 199.9 303 63.7
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 1.8e-46 190.7 115 73.9
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 6.7e-46 188.7 307 57.7
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 8.8e-46 188.3 304 61.8
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 8.2e-44 181.8 144 59.0
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 7.0e-43 178.7 142 59.2
TPR.G11693 Trifolium pratense HOM05D005280 ORTHO05D006253 7.0e-43 178.7 93 82.8
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 2.9e-41 173.3 104 75.0
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.1e-40 171.4 305 43.3
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.1e-32 144.8 312 31.1
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 1.4e-30 137.9 112 59.8
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 2.0e-29 134.0 110 56.4
AUR62014277 Chenopodium quinoa HOM05D005280 ORTHO05D006253 1.7e-28 131.0 91 62.6
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 9.1e-27 125.2 312 28.5
Hma1.2p1_1912F.1_g307330 Hydrangea macrophylla HOM05D019969 ORTHO05D019446 2.6e-13 80.5 77 57.1
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 2.9e-12 77.0 132 40.9
MBI16_g04072_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 3.7e-12 76.6 94 50.0
Aqoxy1G02046 Aquilegia oxysepala HOM05D019969 ORTHO05D019446 1.8e-11 74.3 73 50.7
MBI16_g13364_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 3.2e-11 73.6 87 43.7
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 3.9e-09 66.6 111 37.8
MBI06_g08594_MAGBIO Magnolia biondii HOM05D038649 ORTHO05D006253 6.6e-09 65.9 76 42.1
MBI06_g08595_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 6.6e-09 65.9 71 45.1
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 8.6e-09 65.5 136 75.7
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 5.6e-08 62.8 35 74.3
arahy.Tifrunner.gnm1.ann1.HIJE33 Arachis hypogaea HOM05D005280 ORTHO05D006253 1.2e-07 61.6 61 44.3


User provided reference genes

Program Settings