Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G4284 Erigeron canadensis HOM05D001461 ORTHO05D005534 8.8e-66 253.4 125 100.0
ECA233G4373 Erigeron canadensis HOM05D001461 ORTHO05D005534 5.3e-55 217.6 117 91.5
HanXRQChr04g0120651 Helianthus annuus HOM05D001461 ORTHO05D005534 5.3e-55 217.6 119 89.1
Lsat_1_v5_gn_7_2481 Lactuca sativa HOM05D001461 ORTHO05D005534 3.5e-54 214.9 116 88.8
Solyc11g062280.2 Solanum lycopersicum HOM05D001461 ORTHO05D005534 1.3e-53 213.0 116 86.2
Sopen11g024260 Solanum pennellii HOM05D001461 ORTHO05D005534 1.3e-53 213.0 116 86.2
PGSC0003DMG401032495 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.3e-53 213.0 116 86.2
PGSC0003DMG400007048 Solanum tuberosum HOM05D001461 ORTHO05D005534 1.7e-53 212.6 116 85.3
CAN.G375.83 Capsicum annuum HOM05D001461 ORTHO05D005534 1.9e-52 209.1 116 83.6
Peaxi162Scf00029g02519 Petunia axillaris HOM05D001461 ORTHO05D005534 1.9e-52 209.1 116 83.6
Nitab4.5_0002026g0080 Nicotiana tabacum HOM05D001461 ORTHO05D005534 9.4e-52 206.8 116 81.9
Dinv32542 Davidia involucrata HOM05D001461 ORTHO05D005534 2.1e-51 205.7 116 83.6
LjContig00312_ERROPOS870357g0027559 Lotus japonicus HOM05D001461 ORTHO05D005534 2.1e-51 205.7 116 85.3
Atru.chr9.2071 Acer truncatum HOM05D001461 ORTHO05D005534 2.7e-51 205.3 116 84.5
Medtr5g009740 Medicago truncatula HOM05D001461 ORTHO05D005534 6.1e-51 204.1 116 83.6
Prupe.1G460500 Prunus persica HOM05D001461 ORTHO05D005534 6.1e-51 204.1 116 83.6
Glyma.01G223800 Glycine max HOM05D001461 ORTHO05D005534 8.0e-51 203.8 116 85.3
RcHm_v2.0_Chr6g0304921 Rosa chinensis HOM05D001461 ORTHO05D005534 8.0e-51 203.8 116 82.8
MBI07_g06330_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 1.0e-50 203.4 115 84.3
Lalb_Chr09g0332711 Lupinus albus HOM05D001461 ORTHO05D005534 1.4e-50 203.0 114 84.2
Actinidia10093 Actinidia chinensis HOM05D001461 ORTHO05D005534 1.8e-50 202.6 116 82.8
COL.COLO4_21750 Corchorus olitorius HOM05D001461 ORTHO05D005534 1.8e-50 202.6 116 82.8
MELO3C008160.2 Cucumis melo HOM05D001461 ORTHO05D005534 2.3e-50 202.2 116 82.8
CsaV3_2G033880 Cucumis sativus L. HOM05D001461 ORTHO05D005534 2.3e-50 202.2 116 82.8
ClCG11G007680 Citrullus lanatus HOM05D001461 ORTHO05D005534 3.0e-50 201.8 116 82.8
MBI15_g19879_MAGBIO Magnolia biondii HOM05D001461 ORTHO05D005534 3.0e-50 201.8 115 83.5
Nn7g37350 Nelumbo nucifera HOM05D001461 ORTHO05D005534 3.0e-50 201.8 115 83.5
Sed0013897 Sechium edule HOM05D001461 ORTHO05D005534 3.0e-50 201.8 115 83.5
Glyma.11G019700 Glycine max HOM05D001461 ORTHO05D005534 4.0e-50 201.4 117 85.5
Potri.003G135100 Populus trichocarpa HOM05D001461 ORTHO05D005534 4.0e-50 201.4 118 83.1
CSS0041928 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 8.8e-50 200.3 123 78.0
GSVIVG01019462001 Vitis vinifera HOM05D001461 ORTHO05D002801 8.8e-50 200.3 116 82.8
arahy.Tifrunner.gnm1.ann1.PFJ4ZJ Arachis hypogaea HOM05D001461 ORTHO05D005534 2.0e-49 199.1 116 83.6
PGR042G3251 Punica granatum HOM05D001461 ORTHO05D005534 2.0e-49 199.1 116 78.4
arahy.Tifrunner.gnm1.ann1.Z0SXD6 Arachis hypogaea HOM05D001461 ORTHO05D005534 2.6e-49 198.7 116 83.6
CANSAT21G0685 Cannabis sativa HOM05D001461 ORTHO05D005534 2.6e-49 198.7 116 82.8
FAN04G2189 Fragaria x ananassa HOM05D001461 ORTHO05D002801 3.3e-49 198.4 116 81.0
FAN08G0967 Fragaria x ananassa HOM05D001461 ORTHO05D005534 3.3e-49 198.4 116 81.0
TWI18G0300 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 3.3e-49 198.4 116 80.2
Psat2g033040 Pisum sativum HOM05D001461 ORTHO05D005534 5.7e-49 197.6 114 80.7
TPR.G6688 Trifolium pratense HOM05D001461 ORTHO05D005534 5.7e-49 197.6 116 80.2
Thecc.03G290500 Theobroma cacao HOM05D001461 ORTHO05D005534 7.5e-49 197.2 116 81.0
TWI60G0303 Tripterygium wilfordii HOM05D001461 ORTHO05D005534 7.5e-49 197.2 116 79.3
Hma1.2p1_0384F.1_g140900 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 9.7e-49 196.8 116 81.0
Gohir.A12G232000 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.3e-48 196.4 116 81.0
Gohir.D12G235300 Gossypium hirsutum HOM05D001461 ORTHO05D005534 1.3e-48 196.4 116 81.0
Gorai.008G251500 Gossypium raimondii HOM05D001461 ORTHO05D005534 1.3e-48 196.4 116 81.0
FvH4_5g03750 Fragaria vesca HOM05D001461 ORTHO05D005534 1.7e-48 196.1 116 80.2
Manes.02G014100 Manihot esculenta HOM05D001461 ORTHO05D005534 1.7e-48 196.1 116 80.2
RcHm_v2.0_Chr7g0195901 Rosa chinensis HOM05D001461 ORTHO05D005534 1.7e-48 196.1 116 79.3
CiPaw.12G086700 Carya illinoinensis HOM05D001461 ORTHO05D005534 2.2e-48 195.7 116 79.3
FAN13G1856 Fragaria x ananassa HOM05D001461 ORTHO05D005534 3.7e-48 194.9 116 80.2
VMungo1215G2099 Vigna mungo HOM05D001461 ORTHO05D005534 4.8e-48 194.5 117 80.3
MD15G1108200 Malus domestica HOM05D001461 ORTHO05D005534 6.3e-48 194.1 116 80.2
Duzib084G0256 Durio zibethinus HOM05D001461 ORTHO05D005534 8.2e-48 193.7 116 78.4
Phvul.002G161800 Phaseolus vulgaris HOM05D001461 ORTHO05D005534 8.2e-48 193.7 117 80.3
FAN13G2166 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.1e-47 193.4 116 79.3
Lsat_1_v5_gn_5_108040 Lactuca sativa HOM05D001461 ORTHO05D005534 2.4e-47 192.2 115 83.5
DCAR_025235 Daucus carota HOM05D001461 ORTHO05D005534 7.0e-47 190.7 119 74.8
Eucgr.E00823 Eucalyptus grandis HOM05D001461 ORTHO05D005534 7.0e-47 190.7 116 75.0
Hma1.2p1_0397F.1_g143760 Hydrangea macrophylla HOM05D001461 ORTHO05D005534 7.0e-47 190.7 115 77.4
Prupe.5G111900 Prunus persica HOM05D001461 ORTHO05D005534 7.0e-47 190.7 118 78.0
PSO384G4702 Papaver somniferum HOM05D001461 ORTHO05D005534 1.2e-46 189.9 121 78.5
Sabra03G0097400 Salix brachista HOM05D001461 ORTHO05D005534 1.2e-46 189.9 130 73.8
Zm00001eb376190 Zea mays HOM05D001461 ORTHO05D005534 1.2e-46 189.9 117 76.1
Zm00001eb376220 Zea mays HOM05D001461 ORTHO05D005534 1.2e-46 189.9 117 76.1
Zm00001eb376310 Zea mays HOM05D001461 ORTHO05D005534 1.2e-46 189.9 117 76.1
Zm00001eb376350 Zea mays HOM05D001461 ORTHO05D005534 1.2e-46 189.9 117 76.1
Zm00001eb376910 Zea mays HOM05D001461 ORTHO05D005534 1.2e-46 189.9 117 76.1
Zm00001eb376940 Zea mays HOM05D001461 ORTHO05D005534 1.2e-46 189.9 117 76.1
MSTRG.20880 Avicennia marina HOM05D001461 ORTHO05D005534 1.6e-46 189.5 117 76.9
Aqoxy6G01756 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 2.0e-46 189.1 114 78.1
Os06g0158700 Oryza sativa ssp. japonica HOM05D001461 ORTHO05D005534 2.7e-46 188.7 125 70.4
Thecc.02G012600 Theobroma cacao HOM05D001461 ORTHO05D005534 2.7e-46 188.7 112 79.5
A09p14930 Brassica napus HOM05D001461 ORTHO05D005534 3.5e-46 188.3 118 78.0
BraA09t37138Z Brassica rapa HOM05D001461 ORTHO05D005534 3.5e-46 188.3 118 78.0
BcaB07g31442 Brassica carinata HOM05D001461 ORTHO05D005534 4.5e-46 188.0 116 79.3
BcaB07g31521 Brassica carinata HOM05D001461 ORTHO05D005534 4.5e-46 188.0 116 79.3
LjContig00001g0001336 Lotus japonicus HOM05D001461 ORTHO05D005534 4.5e-46 188.0 118 78.0
LjContig00001g0023327 Lotus japonicus HOM05D001461 ORTHO05D005534 4.5e-46 188.0 118 78.0
BcaC04g22537 Brassica carinata HOM05D001461 ORTHO05D005534 5.9e-46 187.6 116 79.3
C09p18050 Brassica napus HOM05D001461 ORTHO05D005534 5.9e-46 187.6 116 79.3
BolC9t54702H Brassica oleracea HOM05D001461 ORTHO05D005534 5.9e-46 187.6 116 79.3
FAN18G4081 Fragaria x ananassa HOM05D001461 ORTHO05D005534 5.9e-46 187.6 115 76.5
SGA_v2.0_scaffold95G28797 Striga asiatica HOM05D001461 ORTHO05D005534 5.9e-46 187.6 122 73.8
Zm00001eb376260 Zea mays HOM05D001461 ORTHO05D005534 5.9e-46 187.6 117 75.2
ATR0580G205 Amborella trichopoda HOM05D001461 ORTHO05D005534 1.0e-45 186.8 124 75.0
A09p14170 Brassica napus HOM05D001461 ORTHO05D005534 1.3e-45 186.4 116 78.4
BraA09t37065Z Brassica rapa HOM05D001461 ORTHO05D005534 1.3e-45 186.4 116 78.4
Cc03_g08310 Coffea canephora HOM05D001461 ORTHO05D005534 1.3e-45 186.4 118 78.0
SGA_v2.0_scaffold4G02266 Striga asiatica HOM05D001461 ORTHO05D005534 1.3e-45 186.4 116 75.9
CARHR046740 Cardamine hirsuta HOM05D001461 ORTHO05D005534 1.7e-45 186.0 114 78.9
Migut.B01819 Erythranthe guttata HOM05D001461 ORTHO05D005534 1.7e-45 186.0 116 75.9
Aqoxy6G01758 Aquilegia oxysepala HOM05D001461 ORTHO05D005534 2.2e-45 185.7 114 77.2
Migut.E01260 Erythranthe guttata HOM05D001461 ORTHO05D005534 2.2e-45 185.7 116 75.9
CARHR212880 Cardamine hirsuta HOM05D001461 ORTHO05D005534 2.9e-45 185.3 113 78.8
Thhalv10023764m.g Eutrema salsugineum HOM05D001461 ORTHO05D005534 2.9e-45 185.3 116 77.6
C09p17080 Brassica napus HOM05D001461 ORTHO05D005534 3.8e-45 184.9 116 77.6
BolC9t54606H Brassica oleracea HOM05D001461 ORTHO05D005534 3.8e-45 184.9 116 77.6
SalBow3G1410 Salvia bowleyana HOM05D001461 ORTHO05D005534 6.5e-45 184.1 117 76.1
Aa31LG2G1220 Aethionema arabicum HOM05D001461 ORTHO05D002801 8.5e-45 183.7 116 77.6
AT5G41650 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 8.5e-45 183.7 115 77.4
Thhalv10027655m.g Eutrema salsugineum HOM05D001461 ORTHO05D002801 8.5e-45 183.7 114 78.1
Carub.0002s0062 Capsella rubella HOM05D001461 ORTHO05D005534 1.9e-44 182.6 116 75.9
AT1G64185 Arabidopsis thaliana HOM05D001461 ORTHO05D005534 4.2e-44 181.4 116 75.0
EL10Ac1g00327 Beta vulgaris HOM05D001461 ORTHO05D005534 4.2e-44 181.4 115 72.2
AL2G10830 Arabidopsis lyrata HOM05D001461 ORTHO05D005534 1.2e-43 179.9 116 75.0
AUR62004435 Chenopodium quinoa HOM05D001461 ORTHO05D005534 4.7e-43 177.9 115 71.3
AUR62023513 Chenopodium quinoa HOM05D001461 ORTHO05D005534 4.7e-43 177.9 115 71.3
Nitab4.5_0000492g0140 Nicotiana tabacum HOM05D001461 ORTHO05D005534 6.1e-43 177.6 98 83.7
Rhsim07G0008500 Rhododendron simsii HOM05D001461 ORTHO05D005534 8.0e-43 177.2 166 56.6
unitig_62.g23802 Utricularia gibba HOM05D001461 ORTHO05D005534 6.8e-42 174.1 128 66.4
SEGI_29517 Sequoiadendron giganteum HOM05D001461 ORTHO05D005534 8.8e-42 173.7 116 68.1
Lj4g0014781 Lotus japonicus HOM05D001461 ORTHO05D005534 2.0e-41 172.6 116 75.0
Sc01g0010020 Simmondsia chinensis HOM05D001461 ORTHO05D005534 2.0e-41 172.6 120 69.2
Sed0026937 Sechium edule HOM05D001461 ORTHO05D005534 3.4e-41 171.8 116 73.3
CSS0015159 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 5.7e-41 171.0 98 84.7
CSS0025412 Camellia sinensis var. sinensis HOM05D001461 ORTHO05D005534 5.7e-41 171.0 98 84.7
Sc01g0003060 Simmondsia chinensis HOM05D001461 ORTHO05D005534 2.2e-40 169.1 116 69.8
Carub.0007s3383 Capsella rubella HOM05D001461 ORTHO05D005534 2.8e-40 168.7 115 73.0
BcaC04g22646 Brassica carinata HOM05D001461 ORTHO05D005534 3.7e-40 168.3 132 66.7
Nitab4.5_0004629g0090 Nicotiana tabacum HOM05D001461 ORTHO05D005534 1.4e-39 166.4 120 68.3
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 4.1e-39 164.9 99 81.8
FvH4_5g27350 Fragaria vesca HOM05D001461 ORTHO05D005534 4.5e-38 161.4 97 77.3
FAN28G0268 Fragaria x ananassa HOM05D001461 ORTHO05D005534 1.7e-37 159.5 97 75.3
TPR.G32972 Trifolium pratense HOM05D001461 ORTHO05D005534 6.5e-37 157.5 96 78.1
Lj4g0009029 Lotus japonicus HOM05D001461 ORTHO05D005534 7.2e-36 154.1 118 68.6
HPP92_002836 Vanilla planifolia HOM05D001461 ORTHO05D005534 4.7e-35 151.4 100 68.0
Pp3c1_2350 Physcomitrium patens HOM05D001461 ORTHO05D005534 1.5e-33 146.4 110 59.1
Migut.E01261 Erythranthe guttata HOM05D001461 ORTHO05D005534 2.6e-33 145.6 97 73.2
Ah.07g196880 Amaranthus hybridus HOM05D001461 ORTHO05D005534 1.7e-32 142.9 98 66.3
AagrBONN_evm.TU.Sc2ySwM_344.4522 Anthoceros agrestis HOM05D001461 ORTHO05D005534 3.1e-31 138.7 112 56.2
SMO364G0470 Selaginella moellendorffii HOM05D001461 ORTHO05D005534 4.1e-31 138.3 113 54.9
Hund27230 Selenicereus undatus HOM05D001461 ORTHO05D005534 5.4e-31 137.9 109 62.4
Mapoly0143s0026 Marchantia polymorpha HOM05D001461 ORTHO05D005534 2.5e-28 129.0 115 52.2
MD08G1128900 Malus domestica HOM05D001461 ORTHO05D005534 6.1e-27 124.4 95 64.2
arahy.Tifrunner.gnm1.ann1.F4HMTZ Arachis hypogaea HOM05D001461 ORTHO05D005534 9.2e-23 110.5 69 78.3
Oeu054373.3 Olea europaea HOM05D000540 ORTHO05D000681 9.2e-23 110.5 59 91.5
Zm00001eb376320 Zea mays HOM05D001461 ORTHO05D005534 2.0e-22 109.4 116 50.9
arahy.Tifrunner.gnm1.ann1.NAT0LD Arachis hypogaea HOM05D001461 ORTHO05D005534 4.6e-22 108.2 67 77.6
Lj9C594G4 Lonicera japonica HOM05D001461 ORTHO05D005534 1.3e-21 106.7 71 76.1
FAN13G0962 Fragaria x ananassa HOM05D001461 ORTHO05D005534 3.0e-21 105.5 65 75.4
Ciclev10022889m.g Citrus clementina HOM05D001461 ORTHO05D005534 3.9e-21 105.1 60 86.7
vmacro13208 Vaccinium macrocarpon HOM05D001461 ORTHO05D005534 3.9e-21 105.1 63 79.4
Zm00001eb376250 Zea mays HOM05D001461 ORTHO05D005534 8.6e-21 104.0 64 76.6
RcHm_v2.0_Chr5g0061641 Rosa chinensis HOM05D001461 ORTHO05D005534 3.3e-20 102.1 60 80.0
Glyma.06G264500 Glycine max HOM05D001461 ORTHO05D005534 5.6e-20 101.3 61 78.7
MCO07G452 Micromonas commoda HOM05D001461 ORTHO05D005534 1.2e-19 100.1 130 42.3
Glyma.05G213500 Glycine max HOM05D001461 ORTHO05D005534 2.8e-19 99.0 60 78.3
MD08G1130100 Malus domestica HOM05D001461 ORTHO05D005534 1.1e-18 97.1 158 39.9
Oeu063667.1 Olea europaea HOM05D001461 ORTHO05D005534 1.1e-18 97.1 82 62.2
arahy.Tifrunner.gnm1.ann1.2LVS12 Arachis hypogaea HOM05D001461 ORTHO05D005534 1.8e-18 96.3 53 83.0
QL02p032078 Quercus lobata HOM05D001461 ORTHO05D005534 3.1e-18 95.5 51 84.3
PRCOL_00003773 Prasinoderma coloniale HOM05D001461 ORTHO05D005534 5.2e-18 94.7 137 39.4
Actinidia28489 Actinidia chinensis HOM05D001461 ORTHO05D005534 6.8e-18 94.4 51 82.4
MD14G1117200 Malus domestica HOM05D001461 ORTHO05D005534 1.2e-17 93.6 53 79.2
Cfa012281 Carpinus fangiana HOM05D001461 ORTHO05D005534 2.6e-17 92.4 50 80.0
Solyc07g061860.3 Solanum lycopersicum HOM05D001461 ORTHO05D051078 1.8e-10 69.7 72 51.4
Glyma.08G020100 Glycine max HOM05D001461 ORTHO05D005534 1.5e-09 66.6 56 62.5
Sopen07g030150 Solanum pennellii HOM05D018748 ORTHO05D009630 3.4e-09 65.5 35 88.6
MD08G1129600 Malus domestica HOM05D001461 ORTHO05D005534 5.4e-07 58.2 100 42.0


User provided reference genes

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