Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 0.0e+00 1189.5 602 100.0
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 2.5e-206 722.6 464 80.2
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 3.0e-196 689.1 531 71.0
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 1.3e-146 524.2 520 56.5
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 2.5e-142 510.0 546 52.4
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 1.1e-137 494.6 461 57.3
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 4.6e-136 489.2 517 52.2
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.4e-132 477.6 542 48.9
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 2.4e-129 466.8 516 51.2
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 3.5e-128 463.0 522 49.8
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 3.5e-128 463.0 462 54.5
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 1.7e-127 460.7 462 54.5
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 2.5e-126 456.8 521 51.4
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 7.3e-126 455.3 525 49.9
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 8.1e-125 451.8 465 52.9
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 1.4e-124 451.1 543 48.1
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 4.4e-123 446.0 519 48.7
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 6.4e-122 442.2 525 48.6
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 2.4e-121 440.3 485 51.8
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 3.2e-121 439.9 472 51.9
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 4.2e-121 439.5 486 50.8
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 2.1e-120 437.2 518 46.7
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 2.1e-120 437.2 525 48.0
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 2.7e-120 436.8 458 52.4
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 7.8e-120 435.3 520 47.9
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 7.8e-120 435.3 441 51.9
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 2.3e-119 433.7 457 52.5
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 2.3e-119 433.7 470 49.6
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 3.0e-119 433.3 523 46.5
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 5.1e-119 432.6 459 51.9
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 1.9e-118 430.6 456 52.0
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 1.9e-118 430.6 457 52.3
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 9.6e-118 428.3 520 46.9
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 2.1e-117 427.2 472 51.3
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 4.8e-117 426.0 518 47.1
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 1.1e-116 424.9 522 47.9
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 1.8e-116 424.1 518 45.9
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 4.0e-116 422.9 519 49.3
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 1.2e-115 421.4 527 45.7
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 1.2e-115 421.4 471 47.6
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 1.2e-115 421.4 470 47.9
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 2.6e-115 420.2 482 48.8
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 3.4e-115 419.9 518 45.4
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 6.4e-114 415.6 472 48.5
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 2.4e-113 413.7 447 51.9
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 2.7e-112 410.2 523 45.3
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 2.7e-112 410.2 442 51.1
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 1.0e-111 408.3 461 48.2
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 5.1e-111 406.0 572 42.7
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 1.1e-110 404.8 470 46.4
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 2.5e-110 403.7 525 46.1
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 3.3e-110 403.3 460 49.3
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 3.3e-110 403.3 443 49.0
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 4.3e-110 402.9 451 51.2
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 1.3e-109 401.4 461 47.9
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 6.2e-109 399.1 454 50.9
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 1.5e-107 394.4 461 47.3
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 3.4e-107 393.3 528 46.2
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 1.3e-106 391.3 525 45.3
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 2.4e-105 387.1 515 45.0
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 2.7e-104 383.6 472 45.8
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 4.6e-104 382.9 516 43.8
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 2.3e-103 380.6 445 48.3
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 6.7e-103 379.0 457 46.6
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 8.7e-103 378.6 445 47.6
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 1.1e-102 378.3 507 42.2
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 1.9e-102 377.5 521 43.2
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 9.6e-102 375.2 395 51.6
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 1.3e-101 374.8 445 46.7
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 2.1e-101 374.0 445 46.7
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 6.2e-101 372.5 511 43.4
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 8.1e-101 372.1 462 46.3
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 8.1e-101 372.1 447 46.3
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 1.1e-100 371.7 445 46.5
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 1.1e-100 371.7 447 46.5
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 2.4e-100 370.5 448 46.2
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 3.1e-100 370.2 531 42.7
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 1.5e-99 367.9 448 47.1
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 2.6e-99 367.1 445 48.1
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 3.4e-99 366.7 440 44.8
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 6.5e-98 362.5 526 42.0
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 4.2e-97 359.8 445 43.8
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 9.3e-97 358.6 454 42.3
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 1.2e-96 358.2 446 47.1
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 1.6e-96 357.8 349 53.3
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 2.1e-96 357.5 446 46.9
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 3.5e-96 356.7 446 46.0
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 1.3e-95 354.8 446 46.2
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 1.3e-95 354.8 446 46.2
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 1.9e-94 350.9 527 40.8
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 2.4e-92 344.0 497 39.0
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 6.7e-87 325.9 369 47.2
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 8.7e-87 325.5 426 44.6
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 2.0e-83 314.3 373 48.3
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 2.6e-83 313.9 441 41.3
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 1.0e-82 312.0 371 42.6
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 1.1e-81 308.5 415 42.4
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 7.2e-81 305.8 305 52.8
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 5.7e-78 296.2 453 40.8
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 1.7e-74 284.6 207 68.6
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 5.0e-66 256.5 447 36.0
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 6.3e-61 239.6 454 37.4
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 4.1e-60 236.9 320 46.2
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 8.8e-55 219.2 305 43.9
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 1.7e-53 214.9 190 60.0
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 1.2e-51 208.8 467 30.4
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 4.5e-51 206.8 285 42.1
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 1.7e-50 204.9 268 42.5
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 1.2e-46 192.2 463 33.3
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 2.8e-45 187.6 440 33.0
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 9.2e-44 182.6 232 43.1
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 2.3e-42 177.9 469 30.7
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 5.2e-39 166.8 140 57.1
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 1.1e-31 142.5 223 41.7
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 9.8e-30 136.0 248 39.1
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 1.7e-29 135.2 138 47.8
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 7.0e-28 129.8 123 53.7
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.2e-27 129.0 119 53.8
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 1.3e-26 125.6 215 37.2
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 1.1e-25 122.5 119 52.1
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 1.7e-13 82.0 65 55.4
MBI12_g40856_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 5.4e-12 77.0 72 50.0
MBI16_g14988_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 7.1e-12 76.6 97 39.2
TAR362G0264 Trochodendron aralioides HOM05D006020 ORTHO05D007665 1.2e-06 59.3 82 41.5
Os02g0515000 Oryza sativa ssp. japonica HOM05D006020 ORTHO05D007665 7.6e-06 56.6 155 31.0
MCO16G349 Micromonas commoda HOM05D006020 ORTHO05D007665 9.9e-06 56.2 67 41.8


User provided reference genes

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