Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 0.0e+00 1328.9 661 100.0
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 8.5e-144 515.0 312 86.5
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 1.2e-121 441.4 316 73.1
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 3.1e-109 400.2 312 68.6
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 6.4e-107 392.5 317 65.0
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 3.2e-106 390.2 317 64.7
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 3.9e-104 383.3 317 64.0
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 8.6e-104 382.1 317 64.0
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 4.3e-103 379.8 318 62.9
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 4.3e-103 379.8 318 62.9
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 7.3e-103 379.0 309 64.4
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 3.6e-102 376.7 316 62.3
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 4.7e-102 376.3 309 64.1
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 1.8e-101 374.4 306 65.7
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 3.1e-101 373.6 365 56.4
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 7.6e-100 369.0 316 59.8
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 7.6e-100 369.0 309 64.1
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 1.3e-99 368.2 316 61.1
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 8.4e-99 365.5 316 62.7
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 1.1e-98 365.2 316 62.0
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 2.1e-97 360.9 316 62.3
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 3.5e-97 360.1 310 62.3
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 4.6e-97 359.8 318 60.7
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 6.0e-97 359.4 317 59.0
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 7.8e-97 359.0 315 60.3
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 1.3e-96 358.2 309 61.2
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 8.7e-96 355.5 316 58.9
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.9e-95 354.4 317 59.6
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 4.3e-95 353.2 315 60.0
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 5.6e-95 352.8 319 58.9
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 5.6e-95 352.8 287 65.5
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 7.3e-95 352.4 316 57.6
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 7.3e-95 352.4 316 58.9
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 9.6e-95 352.1 316 58.2
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 2.1e-94 350.9 317 59.3
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 3.6e-94 350.1 316 58.5
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 6.2e-94 349.4 317 59.3
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 6.2e-94 349.4 319 58.0
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 8.1e-94 349.0 317 58.4
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 1.4e-93 348.2 316 59.2
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 1.8e-93 347.8 319 56.7
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 4.0e-93 346.7 314 58.9
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 9.0e-93 345.5 316 59.2
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.2e-92 345.1 307 59.3
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.5e-92 344.7 307 59.3
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.0e-92 344.4 300 60.3
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.0e-92 344.4 300 60.3
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 2.6e-92 344.0 315 58.4
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 2.6e-92 344.0 310 60.3
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.8e-92 342.8 300 60.3
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 1.7e-91 341.3 319 57.4
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 2.9e-91 340.5 316 57.9
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 2.9e-91 340.5 315 58.1
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.1e-90 338.6 312 58.0
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 1.4e-90 338.2 308 57.1
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 1.4e-90 338.2 308 57.1
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 1.4e-90 338.2 309 58.9
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 1.9e-90 337.8 317 55.8
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 2.4e-90 337.4 318 57.2
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 4.2e-90 336.7 315 57.1
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 4.2e-90 336.7 306 58.2
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 5.4e-90 336.3 312 57.4
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 5.4e-90 336.3 315 58.4
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 1.2e-89 335.1 349 54.2
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 1.2e-89 335.1 318 56.6
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 1.6e-89 334.7 319 56.1
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 1.6e-89 334.7 321 56.4
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 2.7e-89 334.0 317 55.5
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.7e-89 334.0 301 59.5
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 2.7e-89 334.0 318 57.9
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 3.5e-89 333.6 309 56.0
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 3.5e-89 333.6 317 55.2
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 4.6e-89 333.2 316 56.6
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 7.9e-89 332.4 316 55.1
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 7.9e-89 332.4 316 56.6
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 1.0e-88 332.0 347 53.6
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 1.0e-88 332.0 318 56.0
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 1.8e-88 331.3 308 56.8
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 3.0e-88 330.5 317 57.1
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 3.0e-88 330.5 294 60.2
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 5.1e-88 329.7 319 55.2
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 6.7e-88 329.3 321 56.7
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 1.5e-87 328.2 317 55.5
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 1.9e-87 327.8 318 55.3
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 9.6e-87 325.5 310 56.8
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 9.6e-87 325.5 307 57.0
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 3.6e-86 323.6 315 56.2
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 6.2e-86 322.8 315 56.2
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 1.4e-85 321.6 309 56.0
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 3.1e-85 320.5 315 56.2
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 3.1e-85 320.5 315 56.2
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 1.2e-84 318.5 295 58.3
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 2.0e-84 317.8 315 55.9
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 4.5e-84 316.6 321 55.1
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 4.5e-84 316.6 321 55.5
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 2.2e-83 314.3 314 54.5
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 6.4e-83 312.8 316 55.1
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 1.4e-82 311.6 316 53.8
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 2.4e-82 310.8 349 51.3
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 2.1e-81 307.8 309 53.1
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 2.1e-78 297.7 349 48.4
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 2.4e-77 294.3 318 50.6
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 4.0e-77 293.5 309 53.4
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 1.9e-74 284.6 312 51.9
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 6.3e-70 269.6 313 50.2
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 3.1e-69 267.3 307 48.5
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 3.1e-69 267.3 317 44.2
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 3.7e-62 243.8 203 62.1
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.4e-61 241.9 315 44.8
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 5.3e-61 240.0 334 44.6
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 1.6e-57 228.4 311 44.7
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 4.4e-55 220.3 206 56.3
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 6.1e-49 199.9 322 37.6
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 6.1e-49 199.9 199 55.3
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 7.9e-49 199.5 231 48.1
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 3.0e-48 197.6 217 51.2
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 7.4e-47 193.0 336 35.7
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 9.7e-47 192.6 263 44.1
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 2.8e-46 191.0 238 48.3
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 1.2e-44 185.7 291 40.9
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 3.5e-44 184.1 291 40.9
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 5.0e-43 180.3 221 48.4
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 1.1e-42 179.1 327 35.5
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 5.2e-40 170.2 309 35.6
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 4.0e-32 144.1 109 68.8
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 8.8e-32 142.9 157 52.2
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 4.4e-31 140.6 130 58.5
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 1.4e-29 135.6 196 43.4
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 1.0e-27 129.4 108 63.9
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 6.5e-27 126.7 116 58.6
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 2.8e-25 121.3 89 70.8
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 4.7e-25 120.6 104 60.6
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 6.3e-22 110.2 209 38.3
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.4e-21 109.0 97 59.8
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 3.5e-20 104.4 89 64.0
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.0e-19 102.8 96 56.2
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 1.4e-16 92.4 89 56.2
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 4.9e-14 84.0 317 26.8
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 2.5e-10 71.6 120 35.8
SEGI_30490 Sequoiadendron giganteum HOM05D000218 ORTHO05D000125 1.2e-09 69.3 390 23.3
SEGI_16078 Sequoiadendron giganteum HOM05D000218 ORTHO05D000125 1.4e-08 65.9 389 21.6
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 6.8e-08 63.5 161 29.8
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 2.6e-07 61.6 48 50.0
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 2.9e-06 58.2 115 39.1


User provided reference genes

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