Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 2.2e-140 502.3 252 100.0
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 5.4e-139 497.7 252 98.8
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 7.8e-138 493.8 252 98.4
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 1.2e-133 479.9 252 93.7
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 1.5e-133 479.6 252 93.3
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 1.7e-132 476.1 252 93.7
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 6.4e-132 474.2 252 92.9
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 9.2e-131 470.3 252 90.5
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 3.0e-129 465.3 250 90.8
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 3.0e-129 465.3 252 88.9
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 3.0e-129 465.3 252 88.9
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 3.9e-129 464.9 252 89.7
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 3.9e-129 464.9 252 88.9
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 5.0e-129 464.5 252 89.7
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 1.9e-128 462.6 252 88.1
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 4.3e-128 461.5 272 85.7
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 7.3e-128 460.7 249 89.6
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 6.2e-127 457.6 250 88.8
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 1.1e-126 456.8 249 88.8
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 3.1e-126 455.3 251 88.0
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 5.2e-126 454.5 250 88.4
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 5.2e-126 454.5 250 88.4
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 1.2e-125 453.4 249 87.1
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 1.5e-125 453.0 252 88.1
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 2.6e-125 452.2 250 88.4
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 3.4e-125 451.8 250 86.8
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 4.4e-125 451.4 252 88.1
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 5.8e-125 451.1 244 91.0
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 9.9e-125 450.3 250 86.4
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 9.9e-125 450.3 250 88.4
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 1.3e-124 449.9 244 88.5
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 1.3e-124 449.9 252 87.3
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 1.7e-124 449.5 250 86.8
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 1.7e-124 449.5 250 86.8
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 1.7e-124 449.5 250 86.4
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 2.2e-124 449.1 251 86.5
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 2.2e-124 449.1 249 86.7
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 2.2e-124 449.1 250 88.0
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 3.7e-124 448.4 247 87.9
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 4.9e-124 448.0 250 86.0
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 6.4e-124 447.6 252 88.1
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 8.3e-124 447.2 244 88.5
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 8.3e-124 447.2 249 87.1
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 1.1e-123 446.8 247 89.1
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 1.4e-123 446.4 249 86.3
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 1.9e-123 446.0 251 87.3
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 4.1e-123 444.9 250 86.0
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 5.4e-123 444.5 258 84.1
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 7.1e-123 444.1 247 89.1
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 9.2e-123 443.7 244 89.3
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 1.2e-122 443.4 250 85.2
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.6e-122 443.0 247 87.9
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 1.6e-122 443.0 247 87.9
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 1.6e-122 443.0 249 85.9
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 2.1e-122 442.6 252 86.5
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 2.1e-122 442.6 247 88.7
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 2.7e-122 442.2 247 87.4
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 2.7e-122 442.2 250 86.4
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 4.6e-122 441.4 247 87.4
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 1.0e-121 440.3 250 85.6
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 1.3e-121 439.9 251 85.3
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 1.3e-121 439.9 233 93.1
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 1.7e-121 439.5 244 88.5
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 5.1e-121 438.0 270 82.6
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 5.1e-121 438.0 250 84.8
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 6.6e-121 437.6 249 84.3
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.1e-120 436.8 250 84.8
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 1.5e-120 436.4 255 83.9
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 3.3e-120 435.3 250 84.8
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 7.3e-120 434.1 250 83.6
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 1.2e-119 433.3 243 87.2
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 2.8e-119 432.2 296 75.3
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 3.6e-119 431.8 250 82.8
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 3.6e-119 431.8 236 87.3
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 3.6e-119 431.8 247 86.6
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 4.7e-119 431.4 250 83.6
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 4.7e-119 431.4 250 83.6
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 6.2e-119 431.0 250 83.2
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 8.1e-119 430.6 250 83.6
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 8.1e-119 430.6 250 83.6
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 1.4e-118 429.9 250 83.2
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 1.4e-118 429.9 250 82.8
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 3.1e-118 428.7 250 83.2
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 3.1e-118 428.7 250 83.2
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 2.0e-117 426.0 252 82.1
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 4.4e-117 424.9 231 87.9
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 5.8e-117 424.5 247 82.2
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 7.6e-117 424.1 250 82.8
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 1.6e-114 416.4 297 70.7
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 6.0e-114 414.5 257 82.9
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 1.3e-113 413.3 247 82.6
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 6.6e-113 411.0 363 61.4
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 4.0e-110 401.7 249 78.7
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 9.9e-109 397.1 249 77.5
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 1.7e-108 396.4 244 76.6
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 8.7e-105 384.0 242 74.8
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 8.1e-103 377.5 248 74.6
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 1.1e-102 377.1 222 81.1
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 3.1e-102 375.6 213 85.4
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 7.6e-101 370.9 239 76.6
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 9.9e-101 370.5 250 75.2
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 4.6e-98 361.7 251 71.7
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 7.4e-96 354.4 251 72.5
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 2.1e-95 352.8 237 74.3
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 5.5e-91 338.2 249 65.5
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 1.2e-90 337.0 206 80.1
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 3.3e-88 328.9 194 84.0
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 1.3e-84 317.0 183 82.0
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 4.2e-83 312.0 325 53.8
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 5.5e-83 311.6 187 81.8
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 2.5e-75 286.2 240 56.7
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 2.7e-74 282.7 151 91.4
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 5.1e-73 278.5 209 67.0
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 1.4e-70 270.4 184 72.3
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 7.2e-67 258.1 211 66.8
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 1.4e-65 253.8 152 78.3
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 9.7e-64 247.7 249 49.4
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 3.7e-63 245.7 198 64.6
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 5.5e-59 231.9 247 54.7
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.0e-52 211.1 130 81.5
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.8e-49 200.3 99 98.0
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 2.0e-48 196.8 113 85.8
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 7.0e-46 188.3 249 44.2
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 2.3e-41 173.3 99 80.8
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 8.8e-41 171.4 158 62.0
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 4.4e-40 169.1 99 78.8
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 4.8e-39 165.6 253 35.2
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 1.8e-38 163.7 99 78.8
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 2.9e-36 156.4 99 76.8
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 4.4e-32 142.5 128 60.2
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 4.9e-23 112.5 103 62.1
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 6.2e-18 95.5 64 67.2
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 3.7e-15 86.3 137 44.5
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 4.1e-14 82.8 44 81.8
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 5.4e-14 82.4 56 69.6
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 9.2e-14 81.6 55 72.7
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 5.2e-09 65.9 30 93.3
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 7.6e-08 62.0 55 63.6


User provided reference genes

Program Settings