Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G3496 Erigeron canadensis HOM05D003238 ORTHO05D003571 4.3e-101 371.3 187 100.0
HanXRQChr04g0126171 Helianthus annuus HOM05D003238 ORTHO05D003571 6.1e-47 191.4 168 66.1
Lsat_1_v5_gn_8_86760 Lactuca sativa HOM05D003238 ORTHO05D003571 2.2e-44 183.0 181 58.0
HanXRQChr06g0178591 Helianthus annuus HOM05D003238 ORTHO05D003571 4.1e-35 152.1 186 52.2
Migut.J00580 Erythranthe guttata HOM05D003238 ORTHO05D003571 5.6e-32 141.7 182 48.4
DCAR_031341 Daucus carota HOM05D003238 ORTHO05D003571 6.2e-31 138.3 148 54.1
THA.LOC104813494 Tarenaya hassleriana HOM05D003238 ORTHO05D003571 1.4e-27 127.1 169 47.3
DCAR_031339 Daucus carota HOM05D003238 ORTHO05D003571 5.4e-27 125.2 141 53.2
Cfa003064 Carpinus fangiana HOM05D003238 ORTHO05D003571 2.0e-26 123.2 209 38.3
Lj4C292G2 Lonicera japonica HOM05D003238 ORTHO05D003571 8.6e-25 117.9 138 51.4
Actinidia25242 Actinidia chinensis HOM05D003238 ORTHO05D003571 1.1e-24 117.5 185 41.6
CSS0012761 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.1e-24 117.5 184 40.8
CSS0032672 Camellia sinensis var. sinensis HOM05D003238 ORTHO05D003571 1.1e-24 117.5 184 40.8
PGR142G0437 Punica granatum HOM05D003238 ORTHO05D003571 1.5e-24 117.1 228 35.5
Eucgr.C00871 Eucalyptus grandis HOM05D003238 ORTHO05D003571 2.1e-23 113.2 193 37.3
Ciclev10009462m.g Citrus clementina HOM05D003238 ORTHO05D003571 1.4e-22 110.5 202 39.1
MSTRG.6003 Avicennia marina HOM05D003238 ORTHO05D003571 4.0e-22 109.0 205 39.0
MD15G1209800 Malus domestica HOM05D003238 ORTHO05D003571 6.8e-22 108.2 224 36.2
FAN26G1453 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.0e-21 106.7 201 37.8
MELO3C006025.2 Cucumis melo HOM05D003238 ORTHO05D003571 5.8e-21 105.1 150 42.7
FAN26G0800 Fragaria x ananassa HOM05D003238 ORTHO05D003571 5.8e-21 105.1 202 39.1
MD02G1082200 Malus domestica HOM05D003238 ORTHO05D003571 1.3e-20 104.0 208 37.0
SGA_v2.0_scaffold10G05235 Striga asiatica HOM05D002348 ORTHO05D002512 1.3e-20 104.0 212 35.4
arahy.Tifrunner.gnm1.ann1.57GLQM Arachis hypogaea HOM05D003238 ORTHO05D003571 4.9e-20 102.1 154 40.9
ClCG05G000830 Citrullus lanatus HOM05D003238 ORTHO05D003571 6.4e-20 101.7 160 41.2
Thhalv10014757m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 1.1e-19 100.9 140 43.6
TWI63G0468 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 1.1e-19 100.9 198 38.4
Zm00001eb310990 Zea mays HOM05D003238 ORTHO05D003571 1.4e-19 100.5 136 44.9
FAN28G2679 Fragaria x ananassa HOM05D003238 ORTHO05D003571 1.9e-19 100.1 206 35.9
Lalb_Chr08g0232341 Lupinus albus HOM05D003238 ORTHO05D003571 1.9e-19 100.1 175 34.3
CsaV3_3G008070 Cucumis sativus L. HOM05D003238 ORTHO05D003571 5.4e-19 98.6 155 40.6
TWI32G0644 Tripterygium wilfordii HOM05D003238 ORTHO05D003571 5.4e-19 98.6 209 37.3
Sed0023757 Sechium edule HOM05D003238 ORTHO05D003571 9.2e-19 97.8 165 38.8
RcHm_v2.0_Chr2g0093691 Rosa chinensis HOM05D003238 ORTHO05D003571 2.7e-18 96.3 194 37.6
PGSC0003DMG400000275 Solanum tuberosum HOM05D003238 ORTHO05D003571 2.7e-18 96.3 182 39.0
Os09g0363700 Oryza sativa ssp. japonica HOM05D003238 ORTHO05D003571 3.5e-18 95.9 134 44.0
arahy.Tifrunner.gnm1.ann1.ZSY109 Arachis hypogaea HOM05D003238 ORTHO05D003571 4.6e-18 95.5 154 40.9
FvH4_1g07820 Fragaria vesca HOM05D003238 ORTHO05D003571 4.6e-18 95.5 189 37.6
FAN19G2918 Fragaria x ananassa HOM05D003238 ORTHO05D003571 4.6e-18 95.5 189 37.6
BraA10t43522Z Brassica rapa HOM05D003238 ORTHO05D003571 7.8e-18 94.7 171 38.6
FAN23G0786 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.8e-18 94.7 208 35.1
Prupe.7G206700 Prunus persica HOM05D003238 ORTHO05D003571 7.8e-18 94.7 209 37.3
A03p13050 Brassica napus HOM05D003238 ORTHO05D003571 1.0e-17 94.4 152 40.8
BraA03t10615Z Brassica rapa HOM05D003238 ORTHO05D003571 1.0e-17 94.4 152 40.8
Phvul.009G231100 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.0e-17 94.4 163 38.7
Peaxi162Scf00498g00436 Petunia axillaris HOM05D003238 ORTHO05D003571 1.7e-17 93.6 171 38.6
Ca_26161_v3 Cicer arietinum L. HOM05D003238 ORTHO05D003571 3.0e-17 92.8 153 39.9
Sopen12g003880 Solanum pennellii HOM05D003238 ORTHO05D003571 5.1e-17 92.0 183 37.2
unitig_26.g9174 Utricularia gibba HOM05D003238 ORTHO05D003571 1.1e-16 90.9 120 47.5
GSVIVG01015179001 Vitis vinifera HOM05D003238 ORTHO05D003571 1.1e-16 90.9 168 38.1
BcaB08g36028 Brassica carinata HOM05D003238 ORTHO05D003571 1.9e-16 90.1 157 38.2
Haze_25933 Corylus avellana HOM05D003238 ORTHO05D003571 2.5e-16 89.7 205 31.2
Solyc12g008950.2 Solanum lycopersicum HOM05D003238 ORTHO05D003571 2.5e-16 89.7 176 37.5
Oeu004201.1 Olea europaea HOM05D003238 ORTHO05D003571 5.6e-16 88.6 268 29.9
Glyma.15G170900 Glycine max HOM05D003238 ORTHO05D003571 9.5e-16 87.8 171 37.4
QL02p062228 Quercus lobata HOM05D003238 ORTHO05D003571 2.1e-15 86.7 212 31.1
A02p08810 Brassica napus HOM05D003238 ORTHO05D003571 3.6e-15 85.9 165 40.0
CARHR270740 Cardamine hirsuta HOM05D003238 ORTHO05D003571 4.7e-15 85.5 129 40.3
CANSAT56G2721 Cannabis sativa HOM05D003238 ORTHO05D003571 6.2e-15 85.1 144 38.9
CiPaw.03G213000 Carya illinoinensis HOM05D003238 ORTHO05D003571 8.1e-15 84.7 152 33.6
Sp6g18700 Schrenkiella parvula HOM05D003238 ORTHO05D003571 8.1e-15 84.7 181 37.0
C09p48650 Brassica napus HOM05D003238 ORTHO05D003571 1.8e-14 83.6 161 38.5
BcaC04g20028 Brassica carinata HOM05D003238 ORTHO05D003571 2.3e-14 83.2 167 37.1
BolC9t57711H Brassica oleracea HOM05D003238 ORTHO05D003571 2.3e-14 83.2 167 37.1
BolC2t07595H Brassica oleracea HOM05D003238 ORTHO05D003571 5.2e-14 82.0 182 35.7
BcaC03g14186 Brassica carinata HOM05D003238 ORTHO05D003571 6.8e-14 81.6 182 37.4
C02p14700 Brassica napus HOM05D003238 ORTHO05D003571 8.9e-14 81.3 179 35.8
BraA02t05948Z Brassica rapa HOM05D003238 ORTHO05D003571 1.2e-13 80.9 161 39.8
Psat1g140480 Pisum sativum HOM05D003238 ORTHO05D003571 7.6e-13 78.2 137 32.1
BcaB05g22307 Brassica carinata HOM05D003238 ORTHO05D003571 9.9e-13 77.8 130 40.0
Lsat_1_v5_gn_5_142981 Lactuca sativa HOM05D003238 ORTHO05D003571 1.3e-12 77.4 75 57.3
Medtr2g039890 Medicago truncatula HOM05D003238 ORTHO05D003571 4.9e-12 75.5 61 60.7
SalBow6G6091 Salvia bowleyana HOM05D003238 ORTHO05D003571 4.9e-12 75.5 64 56.2
Potri.004G095300 Populus trichocarpa HOM05D003238 ORTHO05D003571 6.4e-12 75.1 88 48.9
Prupe.3G046400 Prunus persica HOM05D003238 ORTHO05D003571 8.4e-12 74.7 53 67.9
RcHm_v2.0_Chr3g0459511 Rosa chinensis HOM05D003238 ORTHO05D003571 1.1e-11 74.3 50 72.0
TPR.G13426 Trifolium pratense HOM05D003238 ORTHO05D003571 1.4e-11 73.9 45 77.8
MSTRG.4775 Avicennia marina HOM05D003238 ORTHO05D003571 1.9e-11 73.6 68 50.0
FvH4_6g33970 Fragaria vesca HOM05D003238 ORTHO05D003571 3.2e-11 72.8 54 68.5
FAN09G2388 Fragaria x ananassa HOM05D003238 ORTHO05D003571 3.2e-11 72.8 54 68.5
Nn6g35523 Nelumbo nucifera HOM05D003238 ORTHO05D003571 3.2e-11 72.8 174 32.8
BolC3t13964H Brassica oleracea HOM05D003238 ORTHO05D003571 4.1e-11 72.4 151 35.8
CiPaw.02G138700 Carya illinoinensis HOM05D003238 ORTHO05D003571 4.1e-11 72.4 73 52.1
RcHm_v2.0_Chr2g0144001 Rosa chinensis HOM05D003238 ORTHO05D003571 5.4e-11 72.0 53 71.7
FAN05G5076 Fragaria x ananassa HOM05D003238 ORTHO05D003571 7.1e-11 71.6 54 66.7
TAR362G1092 Trochodendron aralioides HOM05D003238 ORTHO05D003571 7.1e-11 71.6 55 61.8
A10p14320 Brassica napus HOM05D003238 ORTHO05D003571 9.2e-11 71.2 160 35.0
Dinv36782 Davidia involucrata HOM05D003238 ORTHO05D003571 9.2e-11 71.2 217 30.4
TAR624G0020 Trochodendron aralioides HOM05D003238 ORTHO05D003571 9.2e-11 71.2 55 61.8
COL.COLO4_18181 Corchorus olitorius HOM05D003238 ORTHO05D003571 2.7e-10 69.7 262 28.2
FAN14G3690 Fragaria x ananassa HOM05D003238 ORTHO05D003571 2.7e-10 69.7 54 66.7
HPP92_006473 Vanilla planifolia HOM05D003238 ORTHO05D003571 2.7e-10 69.7 53 60.4
TAR375G0996 Trochodendron aralioides HOM05D003238 ORTHO05D003571 3.5e-10 69.3 55 60.0
TAR624G1148 Trochodendron aralioides HOM05D003238 ORTHO05D003571 4.6e-10 68.9 134 37.3
BcaB01g04436 Brassica carinata HOM05D003238 ORTHO05D003571 6.0e-10 68.6 179 33.5
Rhsim05G0017200 Rhododendron simsii HOM05D003238 ORTHO05D003571 6.0e-10 68.6 225 29.8
BcaC01g06458 Brassica carinata HOM05D003238 ORTHO05D003571 3.9e-09 65.9 151 34.4
C03p15230 Brassica napus HOM05D003238 ORTHO05D003571 3.9e-09 65.9 151 34.4
Carub.0002s1954 Capsella rubella HOM05D003238 ORTHO05D003571 3.9e-09 65.9 108 38.0
MD09G1190500 Malus domestica HOM05D003238 ORTHO05D003571 8.6e-09 64.7 74 48.6
BcaNung05246 Brassica carinata HOM05D003238 ORTHO05D003571 1.9e-08 63.5 151 32.5
Lj6g0026431 Lotus japonicus HOM05D003238 ORTHO05D003571 1.9e-08 63.5 78 47.4
Phvul.010G137200 Phaseolus vulgaris HOM05D003238 ORTHO05D003571 1.9e-08 63.5 130 34.6
HanXRQChr02g0031751 Helianthus annuus HOM05D003238 ORTHO05D003571 2.5e-08 63.2 46 65.2
Sabra06G0117100 Salix brachista HOM05D003238 ORTHO05D003571 2.5e-08 63.2 132 35.6
Nitab4.5_0002824g0070 Nicotiana tabacum HOM05D003238 ORTHO05D003571 4.3e-08 62.4 188 30.3
vmacro17137 Vaccinium macrocarpon HOM05D003238 ORTHO05D003571 4.3e-08 62.4 207 30.0
A09p28910 Brassica napus HOM05D003238 ORTHO05D003571 5.6e-08 62.0 80 46.2
BraA09t38454Z Brassica rapa HOM05D003238 ORTHO05D003571 5.6e-08 62.0 80 46.2
Lsat_1_v5_gn_1_35700 Lactuca sativa HOM05D003238 ORTHO05D003571 7.3e-08 61.6 74 47.3
Oeu017609.1 Olea europaea HOM05D003238 ORTHO05D003571 7.3e-08 61.6 202 29.7
Thhalv10019375m.g Eutrema salsugineum HOM05D003238 ORTHO05D003571 9.6e-08 61.2 98 38.8
Potri.006G148000 Populus trichocarpa HOM05D003238 ORTHO05D003571 1.2e-07 60.8 132 36.4
Migut.D00960 Erythranthe guttata HOM05D003238 ORTHO05D003571 4.7e-07 58.9 85 43.5
Psat4g187480 Pisum sativum HOM05D003238 ORTHO05D003571 4.7e-07 58.9 116 36.2
SalBow7G1866 Salvia bowleyana HOM05D003238 ORTHO05D003571 4.7e-07 58.9 70 45.7
Sabra04G0064600 Salix brachista HOM05D003238 ORTHO05D003571 6.2e-07 58.5 89 42.7
MD13G1283500 Malus domestica HOM05D003238 ORTHO05D003571 8.1e-07 58.2 113 37.2
Aqoxy7G04029 Aquilegia oxysepala HOM05D003238 ORTHO05D003571 1.1e-06 57.8 139 30.9
HPP92_006471 Vanilla planifolia HOM05D003238 ORTHO05D003571 1.1e-06 57.8 48 58.3
CARHR018090 Cardamine hirsuta HOM05D003238 ORTHO05D003571 1.4e-06 57.4 79 43.0
AL8G32890 Arabidopsis lyrata HOM05D003238 ORTHO05D003571 3.1e-06 56.2 171 29.8
Sp1g15630 Schrenkiella parvula HOM05D003238 ORTHO05D003571 3.1e-06 56.2 85 40.0
Sc14g0000680 Simmondsia chinensis HOM05D051806 ORTHO05D003571 4.0e-06 55.8 172 27.3
AT5G57000 Arabidopsis thaliana HOM05D003238 ORTHO05D003571 5.2e-06 55.5 153 32.0
PGR102G1556 Punica granatum HOM05D003238 ORTHO05D003571 5.2e-06 55.5 128 29.7


User provided reference genes

Program Settings