Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.1e-267 926.0 466 100.0
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 6.2e-181 637.9 464 72.4
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 3.6e-173 612.1 475 66.3
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 4.7e-173 611.7 481 65.7
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 4.3e-150 535.4 476 58.8
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 1.5e-142 510.4 472 54.7
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 1.3e-141 507.3 477 54.7
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 4.8e-141 505.4 489 56.4
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 9.0e-140 501.1 482 53.1
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 3.8e-138 495.7 489 53.0
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 5.5e-137 491.9 483 52.2
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 3.5e-136 489.2 502 50.8
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 3.5e-136 489.2 481 53.0
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 7.9e-136 488.0 486 52.1
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 2.1e-133 479.9 494 50.4
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 2.1e-133 479.9 474 53.2
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 2.8e-133 479.6 495 51.3
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 2.8e-133 479.6 472 52.5
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 8.2e-133 478.0 511 49.9
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 1.1e-132 477.6 474 53.0
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.2e-131 474.2 467 52.0
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.5e-131 473.8 508 50.4
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 2.0e-131 473.4 485 51.3
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 2.0e-131 473.4 485 51.3
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 2.6e-131 473.0 496 50.6
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 3.2e-129 466.1 510 49.2
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 4.2e-129 465.7 386 58.5
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 5.5e-129 465.3 496 50.0
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 1.2e-128 464.2 511 48.9
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 7.9e-128 461.5 384 58.6
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 7.9e-128 461.5 498 48.0
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 1.6e-125 453.8 473 48.8
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 1.6e-125 453.8 471 49.0
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 2.8e-125 453.0 535 45.0
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 2.8e-125 453.0 521 46.3
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 4.8e-125 452.2 467 50.7
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 8.2e-125 451.4 526 47.0
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.8e-124 450.3 526 46.6
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 3.1e-124 449.5 486 50.4
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 3.1e-124 449.5 525 46.3
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 9.0e-124 448.0 519 46.6
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 1.5e-123 447.2 539 46.6
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 3.4e-123 446.0 527 46.3
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 2.2e-122 443.4 475 47.6
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 2.2e-122 443.4 474 48.3
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 2.9e-122 443.0 474 48.3
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 6.5e-122 441.8 476 48.3
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 1.4e-121 440.7 480 49.2
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 4.2e-121 439.1 467 48.8
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 9.4e-121 438.0 552 43.5
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 1.4e-119 434.1 476 48.3
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 3.0e-119 433.0 485 46.6
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 1.1e-118 431.0 498 46.8
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 1.5e-118 430.6 539 43.6
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 7.4e-118 428.3 366 57.1
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 1.7e-117 427.2 538 43.3
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 1.4e-116 424.1 618 40.0
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 2.4e-116 423.3 528 43.9
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 5.3e-116 422.2 497 45.7
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 2.0e-115 420.2 521 43.6
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 2.0e-115 420.2 497 45.3
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 2.0e-115 420.2 476 46.8
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 3.4e-115 419.5 526 42.6
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 3.4e-115 419.5 483 48.9
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 5.9e-115 418.7 471 44.8
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 7.7e-115 418.3 503 44.7
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 1.3e-114 417.5 473 46.7
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 1.7e-114 417.2 518 45.9
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 6.5e-114 415.2 500 44.6
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 8.5e-114 414.8 617 38.2
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 4.2e-113 412.5 383 53.8
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 7.2e-113 411.8 514 43.2
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 9.4e-113 411.4 441 49.2
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 1.6e-112 410.6 470 43.8
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 2.1e-112 410.2 512 43.2
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 2.1e-112 410.2 634 38.8
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 6.1e-112 408.7 524 44.3
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 1.0e-111 407.9 489 46.8
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 1.0e-111 407.9 526 42.4
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 8.8e-111 404.8 491 44.6
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 2.2e-109 400.2 568 40.8
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 4.8e-109 399.1 469 44.8
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 8.2e-109 398.3 525 43.0
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 1.1e-108 397.9 545 43.5
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.8e-108 397.1 393 51.1
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 5.3e-108 395.6 577 40.7
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 3.5e-107 392.9 502 44.0
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 2.9e-106 389.8 500 43.8
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 3.2e-105 386.3 523 41.9
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 7.2e-105 385.2 523 41.9
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 1.6e-104 384.0 547 40.8
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 3.6e-104 382.9 536 41.6
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 6.1e-104 382.1 401 48.6
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 6.1e-104 382.1 543 41.3
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 1.0e-103 381.3 504 42.5
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 1.0e-103 381.3 538 41.6
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 1.0e-103 381.3 538 41.6
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.0e-103 381.3 429 45.5
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 1.8e-103 380.6 549 40.8
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 2.3e-103 380.2 476 44.5
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 4.0e-103 379.4 476 44.5
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 6.7e-103 378.6 470 44.0
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 1.1e-102 377.9 550 40.0
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.8e-101 373.2 397 51.4
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 1.1e-100 371.3 467 45.2
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 5.3e-100 369.0 351 52.7
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 2.2e-98 363.6 502 43.0
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 5.0e-98 362.5 444 44.6
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.2e-96 357.8 476 40.5
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 5.2e-95 352.4 515 40.4
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 6.8e-95 352.1 486 41.6
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 1.4e-92 344.4 477 41.5
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 2.4e-92 343.6 520 41.0
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 3.1e-92 343.2 477 40.5
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.0e-90 338.2 502 41.2
Rhsim01G0048400 Rhododendron simsii HOM05D004232 ORTHO05D004909 3.6e-88 329.7 337 50.4
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 4.7e-88 329.3 459 40.7
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 5.2e-87 325.9 479 39.9
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 9.2e-84 315.1 466 39.3
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 8.6e-82 308.5 472 39.4
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 2.1e-80 303.9 483 39.5
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 4.9e-77 292.7 245 55.1
Os08g0285200 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 4.3e-73 279.6 467 37.5
Cpa.g.sc46.108 Carica papaya HOM05D004232 ORTHO05D004909 2.0e-70 270.8 471 37.8
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.7e-69 267.7 318 45.3
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.2e-67 261.5 417 37.6
CSS0034823 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 1.7e-66 257.7 271 50.9
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 8.6e-66 255.4 317 38.5
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 1.9e-65 254.2 412 38.1
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 1.9e-65 254.2 449 35.9
ATR0629G116 Amborella trichopoda HOM05D004232 ORTHO05D004909 1.2e-64 251.5 372 39.5
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 6.8e-63 245.7 372 39.2
BraA09t37368Z Brassica rapa HOM05D004232 ORTHO05D004909 3.4e-62 243.4 257 47.9
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 1.1e-60 238.4 399 37.3
ECA236G4659 Erigeron canadensis HOM05D004232 ORTHO05D004909 3.0e-58 230.3 152 78.9
BcaB07g31225 Brassica carinata HOM05D004232 ORTHO05D004909 3.3e-57 226.9 211 50.2
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 1.6e-51 208.0 396 33.1
ECA236G3386 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.6e-46 190.7 105 84.8
Ah.12g062460 Amaranthus hybridus HOM05D004232 ORTHO05D004909 2.2e-45 187.6 478 30.3
MCO04G498 Micromonas commoda HOM05D004232 ORTHO05D004909 2.5e-41 174.1 515 29.3
QL05p008018 Quercus lobata HOM05D000129 ORTHO05D004909 6.4e-37 159.5 232 40.1
QL05p007882 Quercus lobata HOM05D004232 ORTHO05D004909 1.6e-32 144.8 123 55.3
Nitab4.5_0010824g0020 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.2e-30 138.7 426 28.6
QL05p007856 Quercus lobata HOM05D004232 ORTHO05D004909 7.6e-30 136.0 549 25.7
CSS0018310 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 2.2e-29 134.4 273 34.8
COL.COLO4_18749 Corchorus olitorius HOM05D004232 ORTHO05D004909 2.3e-26 124.4 270 37.0
PRCOL_00000769 Prasinoderma coloniale HOM05D004232 ORTHO05D004909 3.3e-25 120.6 343 27.4
ATR0629G098 Amborella trichopoda HOM05D004232 ORTHO05D004909 6.2e-24 116.3 85 58.8
Nitab4.5_0008408g0040 Nicotiana tabacum HOM05D004232 ORTHO05D004909 3.1e-23 114.0 159 40.3
CSS0031603 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 9.0e-23 112.5 270 32.6
VMungo1215G1753 Vigna mungo HOM05D004232 ORTHO05D004909 9.0e-23 112.5 110 46.4
Nitab4.5_0000660g0030 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.2e-21 107.8 231 34.6
Glyma.17G103833 Glycine max HOM05D004232 ORTHO05D004909 4.9e-21 106.7 167 34.7
Ah.06g190310 Amaranthus hybridus HOM05D004232 ORTHO05D004909 1.0e-18 99.0 67 59.7
ATR0629G041 Amborella trichopoda HOM05D004232 ORTHO05D004909 3.9e-18 97.1 86 54.7
QL05p007971 Quercus lobata HOM05D004232 ORTHO05D004909 5.1e-18 96.7 216 31.9
Cre02.g111350 Chlamydomonas reinhardtii HOM05D004232 ORTHO05D004909 9.6e-17 92.4 526 21.9
QL05p007864 Quercus lobata HOM05D004232 ORTHO05D004909 4.8e-16 90.1 71 57.7
Cfa025051 Carpinus fangiana HOM05D004232 ORTHO05D004909 5.0e-13 80.1 521 22.5
Oeu050464.1 Olea europaea HOM05D004232 ORTHO05D004909 1.1e-12 79.0 76 48.7
TPR.G29050 Trifolium pratense HOM05D004232 ORTHO05D004909 4.2e-12 77.0 86 39.5
CARHR069300 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.2e-11 75.5 67 53.7
C02p46280 Brassica napus HOM05D000783 ORTHO05D000705 1.0e-10 72.4 84 41.7
Ciclev10028135m.g Citrus clementina HOM05D006922 ORTHO05D008564 8.7e-10 69.3 336 23.2
Glyma.17G103767 Glycine max HOM05D004232 ORTHO05D004909 8.7e-10 69.3 89 37.1
Aa31LG11G520 Aethionema arabicum HOM05D006922 ORTHO05D008564 2.5e-09 67.8 215 27.0
BcaC03g14075 Brassica carinata HOM05D006922 ORTHO05D008564 4.8e-08 63.5 221 27.1
A02p07550 Brassica napus HOM05D006922 ORTHO05D008564 4.8e-08 63.5 221 27.1
C02p13110 Brassica napus HOM05D006922 ORTHO05D008564 4.8e-08 63.5 221 27.1
BolC2t07428H Brassica oleracea HOM05D006922 ORTHO05D008564 4.8e-08 63.5 221 27.1
BcaB05g22449 Brassica carinata HOM05D006922 ORTHO05D008564 8.2e-08 62.8 221 27.6
Thhalv10013126m.g Eutrema salsugineum HOM05D006922 ORTHO05D008564 8.2e-08 62.8 225 27.6
HanXRQChr16g0532771 Helianthus annuus HOM05D004232 ORTHO05D004909 8.2e-08 62.8 45 60.0
Lj2A1081T41 Lonicera japonica HOM05D006922 ORTHO05D008564 1.8e-07 61.6 340 21.2
Nitab4.5_0000843g0060 Nicotiana tabacum HOM05D004232 ORTHO05D004909 4.1e-07 60.5 211 26.1
COL.COLO4_29887 Corchorus olitorius HOM05D001610 ORTHO05D001585 5.9e-06 56.6 144 27.8


User provided reference genes

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