Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 3.7e-123 444.9 224 100.0
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 5.7e-92 341.3 222 80.6
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 5.4e-82 308.1 214 77.1
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 6.2e-78 294.7 227 67.4
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 1.0e-77 293.9 224 69.6
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 4.4e-76 288.5 224 65.2
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 2.9e-75 285.8 230 65.7
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 3.7e-75 285.4 209 69.9
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 4.9e-75 285.0 194 71.1
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 2.4e-74 282.7 225 65.8
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 4.1e-74 282.0 228 64.5
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 7.0e-74 281.2 228 64.5
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 9.2e-74 280.8 201 70.1
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 1.6e-73 280.0 222 64.9
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 2.7e-73 279.3 198 69.7
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 4.6e-73 278.5 227 67.0
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 6.0e-73 278.1 190 73.2
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 6.0e-73 278.1 209 67.9
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 7.8e-73 277.7 190 73.7
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 1.0e-72 277.3 224 62.9
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 1.7e-72 276.6 202 69.8
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 2.3e-72 276.2 190 72.6
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 2.3e-72 276.2 203 68.0
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 2.3e-72 276.2 189 70.4
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 8.6e-72 274.2 203 68.0
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 1.1e-71 273.9 210 65.7
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 1.9e-71 273.1 191 68.1
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 1.9e-71 273.1 198 68.7
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 2.5e-71 272.7 210 65.7
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 1.2e-70 270.4 199 69.3
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 1.6e-70 270.0 196 68.9
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 2.8e-70 269.2 203 66.5
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 3.6e-70 268.9 220 64.5
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 4.7e-70 268.5 196 67.3
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 6.2e-70 268.1 210 62.9
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 6.2e-70 268.1 220 64.1
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 8.1e-70 267.7 204 65.7
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 8.1e-70 267.7 186 69.9
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 1.1e-69 267.3 193 69.4
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 1.1e-69 267.3 193 69.4
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 1.4e-69 266.9 199 66.3
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 2.3e-69 266.2 208 64.9
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 3.1e-69 265.8 195 66.2
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 3.1e-69 265.8 220 64.1
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 4.0e-69 265.4 218 62.4
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 4.0e-69 265.4 190 69.5
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 4.0e-69 265.4 184 70.1
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 5.2e-69 265.0 210 63.3
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 5.2e-69 265.0 212 64.2
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 6.8e-69 264.6 176 71.0
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 6.8e-69 264.6 204 66.7
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 6.8e-69 264.6 191 68.1
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 8.9e-69 264.2 188 69.1
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 8.9e-69 264.2 198 70.7
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 8.9e-69 264.2 252 57.1
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 1.2e-68 263.8 194 67.5
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 1.5e-68 263.5 185 68.6
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 5.8e-68 261.5 185 69.2
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 5.8e-68 261.5 189 68.3
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 9.8e-68 260.8 176 69.9
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 9.8e-68 260.8 176 69.9
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 1.3e-67 260.4 189 67.2
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 2.9e-67 259.2 176 69.9
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 2.9e-67 259.2 176 69.9
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 3.7e-67 258.8 189 68.3
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 6.4e-67 258.1 228 61.0
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 1.1e-66 257.3 190 66.8
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.1e-66 257.3 190 66.8
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.1e-66 257.3 190 66.8
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 1.1e-66 257.3 177 67.8
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 1.1e-66 257.3 176 69.9
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 2.4e-66 256.1 216 60.6
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 2.4e-66 256.1 205 64.4
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 3.2e-66 255.8 190 67.4
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 4.1e-66 255.4 177 74.0
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 7.3e-63 244.6 193 62.7
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 1.6e-62 243.4 206 60.7
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 2.3e-61 239.6 176 63.6
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 5.2e-61 238.4 145 75.2
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 5.2e-61 238.4 142 79.6
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 8.4e-59 231.1 173 63.6
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 1.4e-58 230.3 142 76.1
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 5.4e-58 228.4 190 60.0
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 2.8e-54 216.1 157 72.0
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 3.6e-54 215.7 154 70.1
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 4.7e-54 215.3 220 53.6
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 4.7e-54 215.3 190 61.1
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 3.1e-53 212.6 174 57.5
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 1.5e-52 210.3 174 56.9
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 5.8e-52 208.4 158 67.7
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 3.8e-51 205.7 164 66.5
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 1.1e-50 204.1 165 61.2
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 2.4e-50 203.0 210 51.4
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 4.6e-49 198.7 148 68.9
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.3e-48 197.2 156 64.7
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 4.4e-44 182.2 162 64.8
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 5.6e-39 165.2 167 55.7
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 6.2e-38 161.8 123 63.4
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 1.8e-37 160.2 143 60.8
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 7.6e-36 154.8 180 47.2
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 3.2e-34 149.4 205 42.4
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 2.1e-33 146.7 207 43.0
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 1.3e-32 144.1 84 72.6
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 3.9e-32 142.5 84 71.4
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 1.9e-31 140.2 232 37.1
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 3.1e-29 132.9 140 50.0
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 3.9e-24 115.9 176 37.5
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 5.7e-23 112.1 171 37.4
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 3.1e-21 106.3 55 78.2
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 7.2e-18 95.1 93 55.9
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 3.6e-17 92.8 100 58.0
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 1.3e-16 90.9 82 53.7
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 6.9e-13 78.6 110 47.3
SEGI_39378 Sequoiadendron giganteum HOM05D005663 ORTHO05D007258 9.4e-10 68.2 239 25.9
SEGI_35413 Sequoiadendron giganteum HOM05D003483 ORTHO05D004101 7.9e-09 65.1 234 25.2
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 1.4e-08 64.3 34 76.5
Cre03.g188650 Chlamydomonas reinhardtii HOM05D003483 ORTHO05D004101 1.8e-08 63.9 180 30.6
Dinv13821 Davidia involucrata HOM05D006988 ORTHO05D008731 1.8e-08 63.9 81 50.6
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 3.9e-08 62.8 72 48.6
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 5.1e-08 62.4 220 28.6
Pp3c6_24510 Physcomitrium patens HOM05D006358 ORTHO05D008185 8.8e-08 61.6 157 27.4
Aqoxy3G02633 Aquilegia oxysepala HOM05D005663 ORTHO05D007258 7.4e-07 58.5 192 28.6
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 9.7e-07 58.2 149 30.2
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 1.3e-06 57.8 73 46.6
RcHm_v2.0_Chr1g0348661 Rosa chinensis HOM05D006988 ORTHO05D008731 1.7e-06 57.4 33 69.7
Gohir.A06G149400 Gossypium hirsutum HOM05D005663 ORTHO05D007258 2.2e-06 57.0 203 24.6
CDE12G0169 Ceratophyllum demersum HOM05D005663 ORTHO05D007258 2.8e-06 56.6 197 25.4
Gorai.010G181700 Gossypium raimondii HOM05D005663 ORTHO05D007258 2.8e-06 56.6 203 25.1
Hund03480 Selenicereus undatus HOM05D005663 ORTHO05D007258 3.7e-06 56.2 237 25.3
Medtr8g092680 Medicago truncatula HOM05D005663 ORTHO05D007258 6.3e-06 55.5 235 26.0
HPP92_016149 Vanilla planifolia HOM05D005663 ORTHO05D007258 8.2e-06 55.1 209 22.0


User provided reference genes

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