Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G2916 Erigeron canadensis HOM05D005399 ORTHO05D006347 0.0e+00 1964.5 985 100.0
HanXRQChr15g0470151 Helianthus annuus HOM05D005399 ORTHO05D006347 7.4e-269 931.0 787 62.1
Lsat_1_v5_gn_7_13681 Lactuca sativa HOM05D005399 ORTHO05D006347 3.2e-256 889.0 726 63.9
HanXRQChr01g0023961 Helianthus annuus HOM05D005399 ORTHO05D006347 2.7e-255 885.9 790 61.4
QL09p007265 Quercus lobata HOM05D005399 ORTHO05D006347 2.3e-193 680.2 891 44.2
GSVIVG01038634001 Vitis vinifera HOM05D005399 ORTHO05D006347 1.9e-192 677.2 764 49.9
Haze_00285 Corylus avellana HOM05D005399 ORTHO05D006347 2.1e-191 673.7 865 44.4
Thecc.03G207700 Theobroma cacao HOM05D005399 ORTHO05D006347 4.5e-189 666.0 900 43.2
Cc11_g00230 Coffea canephora HOM05D005399 ORTHO05D006347 1.4e-187 661.0 796 45.9
Cfa016169 Carpinus fangiana HOM05D005399 ORTHO05D006347 2.1e-186 657.1 823 45.1
Ciclev10018828m.g Citrus clementina HOM05D005399 ORTHO05D006347 2.7e-186 656.8 782 46.4
Hma1.2p1_0094F.1_g047320 Hydrangea macrophylla HOM05D005399 ORTHO05D006347 2.3e-185 653.7 1024 40.4
TAR629G1213 Trochodendron aralioides HOM05D005399 ORTHO05D006347 2.3e-185 653.7 1093 39.0
vmacro06433 Vaccinium macrocarpon HOM05D005399 ORTHO05D006347 6.7e-185 652.1 1088 38.6
DCAR_008979 Daucus carota HOM05D005399 ORTHO05D006347 1.1e-184 651.4 824 45.4
RcHm_v2.0_Chr4g0412561 Rosa chinensis HOM05D005399 ORTHO05D006347 1.9e-184 650.6 819 46.2
MD04G1021200 Malus domestica HOM05D005399 ORTHO05D006347 2.5e-184 650.2 772 48.3
Sopen06g030090 Solanum pennellii HOM05D005399 ORTHO05D006347 7.4e-184 648.7 807 46.7
MSTRG.26983 Avicennia marina HOM05D005399 ORTHO05D006347 1.6e-183 647.5 800 45.5
CANSAT21G1620 Cannabis sativa HOM05D005399 ORTHO05D006347 1.1e-182 644.8 851 44.8
TWI39G1122 Tripterygium wilfordii HOM05D005399 ORTHO05D006347 1.1e-182 644.8 898 41.3
MD10G1005500 Malus domestica HOM05D005399 ORTHO05D006347 1.4e-182 644.4 772 48.4
COL.COLO4_14362 Corchorus olitorius HOM05D005399 ORTHO05D006347 2.4e-182 643.7 853 44.5
Gorai.004G124900 Gossypium raimondii HOM05D005399 ORTHO05D006347 1.2e-181 641.3 842 43.8
CsaV3_2G029520 Cucumis sativus L. HOM05D005399 ORTHO05D006347 7.6e-181 638.6 849 43.0
Gohir.D08G116000 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.3e-180 637.9 842 43.7
CAN.G65.216 Capsicum annuum HOM05D005399 ORTHO05D006347 1.7e-180 637.5 807 45.8
ClCG08G014290 Citrullus lanatus HOM05D005399 ORTHO05D006347 3.8e-180 636.3 779 45.8
Migut.F00156 Erythranthe guttata HOM05D005399 ORTHO05D006347 1.1e-179 634.8 804 45.8
Rhsim03G0214700 Rhododendron simsii HOM05D005399 ORTHO05D006347 2.5e-179 633.6 839 45.8
Actinidia34263 Actinidia chinensis HOM05D005399 ORTHO05D006347 1.0e-177 628.2 1085 38.5
SGA_v2.0_scaffold18G08460 Striga asiatica HOM05D005399 ORTHO05D006347 1.3e-177 627.9 798 43.2
FAN12G2064 Fragaria x ananassa HOM05D005399 ORTHO05D006347 5.7e-176 622.5 851 43.8
FvH4_4g12930 Fragaria vesca HOM05D005399 ORTHO05D006347 7.4e-176 622.1 851 44.1
Potri.012G021900 Populus trichocarpa HOM05D005399 ORTHO05D006347 7.4e-176 622.1 879 41.8
FAN07G0819 Fragaria x ananassa HOM05D005399 ORTHO05D006347 4.8e-175 619.4 853 43.7
CARHR158370 Cardamine hirsuta HOM05D005399 ORTHO05D006347 8.2e-175 618.6 879 40.7
Sabra12G0011800 Salix brachista HOM05D005399 ORTHO05D006347 4.5e-173 612.8 879 41.1
Sabra05G0139800 Salix brachista HOM05D005399 ORTHO05D006347 2.2e-172 610.5 879 41.2
Lj3C896G2 Lonicera japonica HOM05D005399 ORTHO05D006347 5.0e-172 609.4 1047 38.4
PGR102G0827 Punica granatum HOM05D005399 ORTHO05D006347 8.5e-172 608.6 894 41.8
Atru.chr12.2405 Acer truncatum HOM05D005399 ORTHO05D006347 1.4e-171 607.8 854 43.0
Medtr5g077160 Medicago truncatula HOM05D005399 ORTHO05D006347 3.9e-169 599.7 828 42.6
Sed0017875 Sechium edule HOM05D005399 ORTHO05D006347 3.9e-169 599.7 785 42.5
Nn3g18028 Nelumbo nucifera HOM05D005399 ORTHO05D006347 1.5e-168 597.8 1078 36.4
Aa31LG4G17950 Aethionema arabicum HOM05D005399 ORTHO05D006347 2.0e-168 597.4 795 41.6
Medtr1g059090 Medicago truncatula HOM05D005399 ORTHO05D006347 2.0e-168 597.4 835 43.2
AL5G29160 Arabidopsis lyrata HOM05D005399 ORTHO05D006347 1.3e-167 594.7 881 39.8
Ca_27344_v3 Cicer arietinum L. HOM05D005399 ORTHO05D006347 2.2e-167 594.0 826 43.3
Phvul.004G128800 Phaseolus vulgaris HOM05D005399 ORTHO05D006347 2.2e-167 594.0 765 45.0
BolC1t03020H Brassica oleracea HOM05D005399 ORTHO05D006347 2.8e-167 593.6 871 40.1
BraA01t02386Z Brassica rapa HOM05D005399 ORTHO05D006347 2.8e-167 593.6 871 40.0
A01p24740 Brassica napus HOM05D005399 ORTHO05D006347 4.8e-167 592.8 809 41.8
Carub.0005s1567 Capsella rubella HOM05D005399 ORTHO05D006347 6.3e-167 592.4 813 41.5
C01p30860 Brassica napus HOM05D005399 ORTHO05D006347 1.1e-166 591.7 871 40.0
TPR.G18894 Trifolium pratense HOM05D005399 ORTHO05D006347 1.1e-166 591.7 842 42.6
Lalb_Chr03g0034521 Lupinus albus HOM05D005399 ORTHO05D006347 1.4e-166 591.3 773 44.9
Sp5g12670 Schrenkiella parvula HOM05D005399 ORTHO05D006347 2.4e-166 590.5 877 40.1
Aqoxy5G00909 Aquilegia oxysepala HOM05D005399 ORTHO05D006347 3.1e-166 590.1 1075 35.4
SalBow6G2741 Salvia bowleyana HOM05D005399 ORTHO05D006347 9.1e-166 588.6 872 41.9
Lj5g0008235 Lotus japonicus HOM05D005399 ORTHO05D006347 8.5e-164 582.0 834 42.6
Lj4g0025583 Lotus japonicus HOM05D005399 ORTHO05D006347 1.4e-163 581.3 836 42.3
Glyma.10G094100 Glycine max HOM05D005399 ORTHO05D006347 5.5e-163 579.3 757 44.3
SalBow1G5593 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.2e-162 578.2 872 41.1
SalBow1G2085 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.5e-160 571.2 772 44.0
Sc19g0000620 Simmondsia chinensis HOM05D005399 ORTHO05D006347 2.0e-160 570.9 902 38.8
Prupe.1G170200 Prunus persica HOM05D005399 ORTHO05D006347 2.8e-159 567.0 759 45.5
arahy.Tifrunner.gnm1.ann1.MB6KVE Arachis hypogaea HOM05D005399 ORTHO05D006347 1.1e-158 565.1 842 41.2
Oeu037969.1 Olea europaea HOM05D005399 ORTHO05D006347 4.1e-158 563.1 758 43.9
Thhalv10010115m.g Eutrema salsugineum HOM05D005399 ORTHO05D006347 1.5e-157 561.2 876 39.0
arahy.Tifrunner.gnm1.ann1.CBX7CP Arachis hypogaea HOM05D005399 ORTHO05D006347 4.5e-157 559.7 785 42.7
MELO3C011011.2 Cucumis melo HOM05D005399 ORTHO05D006347 3.8e-156 556.6 715 43.4
THA.LOC104803340 Tarenaya hassleriana HOM05D005399 ORTHO05D006347 5.0e-156 556.2 787 41.0
CiPaw.05G203600 Carya illinoinensis HOM05D005399 ORTHO05D006347 1.9e-155 554.3 623 47.4
SalBow1G6622 Salvia bowleyana HOM05D005399 ORTHO05D006347 1.4e-153 548.1 803 42.5
Nitab4.5_0002184g0080 Nicotiana tabacum HOM05D005399 ORTHO05D006347 6.7e-153 545.8 751 43.0
Psat2g044800 Pisum sativum HOM05D005399 ORTHO05D006347 3.3e-152 543.5 774 42.6
Manes.01G042700 Manihot esculenta HOM05D005399 ORTHO05D006347 5.0e-148 529.6 840 41.5
AUR62035614 Chenopodium quinoa HOM05D005399 ORTHO05D006347 2.8e-143 513.8 1008 34.3
Nitab4.5_0000271g0170 Nicotiana tabacum HOM05D005399 ORTHO05D006347 5.9e-141 506.1 695 43.3
EL10Ac3g05189 Beta vulgaris HOM05D005399 ORTHO05D006347 5.0e-140 503.1 998 33.6
Duzib205G1241 Durio zibethinus HOM05D005399 ORTHO05D006347 3.2e-139 500.4 567 47.8
ATR1089G058 Amborella trichopoda HOM05D005399 ORTHO05D006347 3.1e-134 483.8 961 34.2
VMungo1080G0063 Vigna mungo HOM05D005399 ORTHO05D006347 3.3e-131 473.8 1031 31.7
arahy.Tifrunner.gnm1.ann1.61K3C5 Arachis hypogaea HOM05D005399 ORTHO05D006347 3.6e-130 470.3 773 39.3
Glyma.14G156200 Glycine max HOM05D005399 ORTHO05D006347 3.6e-130 470.3 669 42.2
Eucgr.H04750 Eucalyptus grandis HOM05D005399 ORTHO05D006347 6.1e-130 469.5 503 49.1
Os01g0702400 Oryza sativa ssp. japonica HOM05D005399 ORTHO05D006347 6.8e-129 466.1 871 34.8
PSO782G2701 Papaver somniferum HOM05D005399 ORTHO05D006347 9.8e-128 462.2 1033 32.9
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 1.3e-127 461.8 660 42.6
AT3G49400 Arabidopsis thaliana HOM05D005399 ORTHO05D006347 2.3e-124 451.1 543 44.8
Gohir.A08G104400 Gossypium hirsutum HOM05D005399 ORTHO05D006347 7.3e-123 446.0 565 45.5
arahy.Tifrunner.gnm1.ann1.GD33A2 Arachis hypogaea HOM05D005399 ORTHO05D006347 4.0e-121 440.3 557 44.7
Cpa.g.sc13.113 Carica papaya HOM05D005399 ORTHO05D006347 2.6e-120 437.6 697 38.6
Dinv29218 Davidia involucrata HOM05D005399 ORTHO05D006347 7.0e-118 429.5 435 54.7
AUR62006012 Chenopodium quinoa HOM05D005399 ORTHO05D006347 1.1e-115 422.2 635 40.5
PGSC0003DMG400005917 Solanum tuberosum HOM05D005399 ORTHO05D006347 1.8e-113 414.8 489 47.9
CDE04G3617 Ceratophyllum demersum HOM05D005399 ORTHO05D006347 2.7e-109 401.0 942 32.6
unitig_749.g13730 Utricularia gibba HOM05D005399 ORTHO05D006347 9.5e-107 392.5 766 35.1
Ah.09g232770 Amaranthus hybridus HOM05D005399 ORTHO05D006347 6.2e-106 389.8 570 39.1
VMungo0464G0254 Vigna mungo HOM05D005399 ORTHO05D006347 1.7e-103 381.7 509 42.8
Pp3c18_13210 Physcomitrium patens HOM05D005399 ORTHO05D006347 3.9e-100 370.5 871 33.0
Hund09706 Selenicereus undatus HOM05D005399 ORTHO05D006347 9.3e-94 349.4 723 33.1
SMO170G0037 Selaginella moellendorffii HOM05D005399 ORTHO05D006347 8.4e-87 326.2 850 31.1
Zm00001eb062490 Zea mays HOM05D005399 ORTHO05D006347 9.6e-83 312.8 481 38.5
Mapoly0079s0055 Marchantia polymorpha HOM05D005399 ORTHO05D006347 3.3e-75 287.7 1103 24.4
Zm00001eb211870 Zea mays HOM05D005399 ORTHO05D006347 3.1e-73 281.2 484 36.6
AagrBONN_evm.TU.Sc2ySwM_117.1095 Anthoceros agrestis HOM05D005399 ORTHO05D006347 4.2e-70 270.8 884 27.4
PSO063G2915 Papaver somniferum HOM05D005399 ORTHO05D006347 1.6e-69 268.9 681 31.0
Dinv29217 Davidia involucrata HOM05D005399 ORTHO05D006347 2.9e-63 248.1 189 66.1
CSS0012529 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 5.1e-60 237.3 192 61.5
CSS0044981 Camellia sinensis var. sinensis HOM05D005399 ORTHO05D006347 2.2e-58 231.9 258 50.0
arahy.Tifrunner.gnm1.ann1.JN7TNN Arachis hypogaea HOM05D005399 ORTHO05D006347 1.1e-57 229.6 727 27.5
Dinv07613 Davidia involucrata HOM05D005399 ORTHO05D006347 2.6e-56 224.9 156 67.3
Gohir.A08G105050 Gossypium hirsutum HOM05D005399 ORTHO05D006347 1.8e-52 212.2 194 53.1
Peaxi162Scf00526g00516 Petunia axillaris HOM05D005399 ORTHO05D006347 1.7e-47 195.7 198 52.0
Solyc06g073690.2 Solanum lycopersicum HOM05D005399 ORTHO05D006347 1.9e-46 192.2 198 51.5
Eucgr.H04749 Eucalyptus grandis HOM05D005399 ORTHO05D006347 4.7e-45 187.6 357 37.5
BcaB05g23117 Brassica carinata HOM05D005399 ORTHO05D006347 7.9e-45 186.8 206 47.1
arahy.Tifrunner.gnm1.ann1.QKC624 Arachis hypogaea HOM05D005399 ORTHO05D006347 8.2e-42 176.8 570 27.0
Peaxi162Scf00526g00518 Petunia axillaris HOM05D005399 ORTHO05D006347 1.6e-40 172.6 287 37.3
CBR_g20108 Chara braunii HOM05D001969 ORTHO05D003463 5.5e-38 164.1 442 31.4
SHI24245 Sapria himalayana HOM05D005399 ORTHO05D006347 1.8e-36 159.1 278 35.6
HPP92_021257 Vanilla planifolia HOM05D005399 ORTHO05D006347 8.5e-31 140.2 283 32.9
BcaC09g49950 Brassica carinata HOM05D005399 ORTHO05D006347 1.6e-29 136.0 109 57.8
SHI24147 Sapria himalayana HOM05D005399 ORTHO05D006347 4.1e-25 121.3 340 28.2
BcaC09g49949 Brassica carinata HOM05D005399 ORTHO05D006347 7.7e-24 117.1 271 32.5
SEGI_00776 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 1.4e-20 106.3 131 43.5
MD10G1005800 Malus domestica HOM05D005399 ORTHO05D006347 3.0e-20 105.1 84 56.0
Psat6g243120 Pisum sativum HOM05D005399 ORTHO05D006347 4.0e-20 104.8 208 31.7
ECA232G2690 Erigeron canadensis HOM05D000353 ORTHO05D000174 4.9e-18 97.8 69 72.5
ECA246G2230 Erigeron canadensis HOM05D022122 ORTHO05D000843 6.3e-18 97.4 58 79.3
SHI24234 Sapria himalayana HOM05D005399 ORTHO05D006347 2.4e-17 95.5 120 45.0
ECA236G2237 Erigeron canadensis HOM05D000232 ORTHO05D000145 3.1e-17 95.1 57 75.4
ECA238G4774 Erigeron canadensis HOM05D000353 ORTHO05D000174 1.7e-15 89.4 69 66.7
SEGI_05702 Sequoiadendron giganteum HOM05D005399 ORTHO05D006347 2.5e-14 85.5 187 32.1
MCO09G305 Micromonas commoda HOM05D005399 ORTHO05D006347 6.8e-12 77.4 165 34.5
MBI17_g18936_MAGBIO Magnolia biondii HOM05D005399 ORTHO05D006347 1.2e-11 76.6 113 42.5
ECA236G5002 Erigeron canadensis HOM05D000353 ORTHO05D000174 1.0e-07 63.5 54 53.7


User provided reference genes

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