Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G2733 Erigeron canadensis HOM05D004223 ORTHO05D004792 7.9e-197 690.3 352 100.0
HanXRQChr04g0118281 Helianthus annuus HOM05D004223 ORTHO05D004792 3.7e-146 521.9 321 84.1
Lsat_1_v5_gn_7_32901 Lactuca sativa HOM05D004223 ORTHO05D004792 6.8e-132 474.6 323 76.5
Lsat_1_v5_gn_7_7501 Lactuca sativa HOM05D004223 ORTHO05D004792 1.9e-129 466.5 329 76.3
Dinv32277 Davidia involucrata HOM05D004223 ORTHO05D004792 1.6e-112 410.2 301 71.4
Solyc02g070860.4 Solanum lycopersicum HOM05D004223 ORTHO05D004792 1.0e-111 407.5 300 70.3
Sopen02g019940 Solanum pennellii HOM05D004223 ORTHO05D004792 1.3e-111 407.1 300 70.7
Migut.M00929 Erythranthe guttata HOM05D004223 ORTHO05D004792 1.4e-108 397.1 303 67.3
Actinidia19511 Actinidia chinensis HOM05D004223 ORTHO05D004792 5.3e-108 395.2 301 68.8
CAN.G257.3 Capsicum annuum HOM05D004223 ORTHO05D004792 2.9e-106 389.4 300 67.7
Cc09_g08890 Coffea canephora HOM05D004223 ORTHO05D004792 3.8e-106 389.0 297 66.7
Actinidia07682 Actinidia chinensis HOM05D004223 ORTHO05D004792 6.4e-106 388.3 303 66.3
FvH4_3g05960 Fragaria vesca HOM05D004223 ORTHO05D004792 1.1e-105 387.5 291 68.4
Migut.H01375 Erythranthe guttata HOM05D004223 ORTHO05D004792 3.2e-105 386.0 301 66.4
Prupe.4G077600 Prunus persica HOM05D004223 ORTHO05D004792 5.4e-105 385.2 301 66.1
MD05G1287300 Malus domestica HOM05D004223 ORTHO05D004792 2.1e-104 383.3 306 65.4
MD10G1264700 Malus domestica HOM05D004223 ORTHO05D004792 4.6e-104 382.1 303 67.3
DCAR_027947 Daucus carota HOM05D004223 ORTHO05D004792 7.9e-104 381.3 301 66.1
RcHm_v2.0_Chr5g0013511 Rosa chinensis HOM05D004223 ORTHO05D004792 3.0e-103 379.4 291 68.0
Oeu019944.1 Olea europaea HOM05D004223 ORTHO05D004792 4.3e-102 375.6 300 65.3
QL05p059118 Quercus lobata HOM05D004223 ORTHO05D004792 5.6e-102 375.2 292 66.4
Duzib235G1300 Durio zibethinus HOM05D004223 ORTHO05D004792 8.1e-101 371.3 306 65.0
Nitab4.5_0001655g0250 Nicotiana tabacum HOM05D004223 ORTHO05D004792 1.8e-100 370.2 392 55.4
Thecc.06G153700 Theobroma cacao HOM05D004223 ORTHO05D004792 3.8e-98 362.5 294 65.0
PGR042G0116 Punica granatum HOM05D004223 ORTHO05D004792 2.4e-97 359.8 296 62.8
GSVIVG01021418001 Vitis vinifera HOM05D004223 ORTHO05D004792 3.2e-97 359.4 292 66.4
Glyma.05G129300 Glycine max HOM05D004223 ORTHO05D004792 5.5e-97 358.6 292 62.7
Glyma.08G084000 Glycine max HOM05D004223 ORTHO05D004792 7.1e-97 358.2 292 63.0
PSO675G0042 Papaver somniferum HOM05D004223 ORTHO05D004792 3.5e-96 355.9 294 64.6
PSO541G2658 Papaver somniferum HOM05D004223 ORTHO05D004792 4.6e-96 355.5 294 64.6
Gohir.A10G039200 Gossypium hirsutum HOM05D004223 ORTHO05D004792 6.0e-96 355.1 306 61.8
Dinv30715 Davidia involucrata HOM05D004223 ORTHO05D004792 1.0e-95 354.4 248 73.8
Lj4g0000090 Lotus japonicus HOM05D004223 ORTHO05D004792 1.3e-95 354.0 296 62.5
Manes.17G067700 Manihot esculenta HOM05D004223 ORTHO05D004792 1.3e-95 354.0 306 62.1
Nn3g20665 Nelumbo nucifera HOM05D004223 ORTHO05D004792 1.3e-95 354.0 292 62.7
CiPaw.10G093300 Carya illinoinensis HOM05D004223 ORTHO05D004792 2.3e-95 353.2 291 64.3
Gohir.D10G040000 Gossypium hirsutum HOM05D004223 ORTHO05D004792 2.3e-95 353.2 306 61.4
Gorai.011G042100 Gossypium raimondii HOM05D004223 ORTHO05D004792 2.3e-95 353.2 306 61.4
arahy.Tifrunner.gnm1.ann1.EM1NUG Arachis hypogaea HOM05D004223 ORTHO05D004792 2.5e-94 349.7 292 61.0
Cfa023352 Carpinus fangiana HOM05D004223 ORTHO05D004792 2.5e-94 349.7 317 59.6
Ciclev10015725m.g Citrus clementina HOM05D004223 ORTHO05D004792 2.5e-94 349.7 306 60.8
arahy.Tifrunner.gnm1.ann1.KB83YE Arachis hypogaea HOM05D004223 ORTHO05D004792 5.6e-94 348.6 292 60.6
CANSAT35G1433 Cannabis sativa HOM05D004223 ORTHO05D004792 2.1e-93 346.7 308 59.7
Aqoxy1G01765 Aquilegia oxysepala HOM05D004223 ORTHO05D004792 4.8e-93 345.5 303 60.1
Phvul.002G194500 Phaseolus vulgaris HOM05D004223 ORTHO05D004792 5.3e-92 342.0 291 60.5
TWI59G0075 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 3.4e-91 339.3 296 61.1
Duzib133G0675 Durio zibethinus HOM05D004223 ORTHO05D004792 2.9e-90 336.3 288 61.5
Ciclev10031935m.g Citrus clementina HOM05D004223 ORTHO05D004792 6.5e-90 335.1 290 59.7
FAN11G3669 Fragaria x ananassa HOM05D004223 ORTHO05D004792 8.4e-90 334.7 328 55.8
Lalb_Chr12g0208891 Lupinus albus HOM05D004223 ORTHO05D004792 8.4e-90 334.7 301 58.1
SalBow8G4695 Salvia bowleyana HOM05D004223 ORTHO05D004792 3.2e-89 332.8 368 52.2
SalBow8G5598 Salvia bowleyana HOM05D004223 ORTHO05D004792 3.2e-89 332.8 368 52.2
Sc05g0006430 Simmondsia chinensis HOM05D004223 ORTHO05D004792 9.3e-89 331.3 302 59.6
Nitab4.5_0001040g0160 Nicotiana tabacum HOM05D004223 ORTHO05D004792 3.5e-88 329.3 373 54.4
Potri.005G203600 Populus trichocarpa HOM05D004223 ORTHO05D004792 3.5e-88 329.3 302 59.6
Medtr4g096650 Medicago truncatula HOM05D004223 ORTHO05D004792 4.3e-86 322.4 292 58.2
Rhsim02G0155900 Rhododendron simsii HOM05D004223 ORTHO05D004792 7.4e-86 321.6 240 68.3
Thecc.01G170900 Theobroma cacao HOM05D004223 ORTHO05D004792 9.6e-86 321.2 289 58.1
VMungo0251G1974 Vigna mungo HOM05D004223 ORTHO05D004792 4.8e-85 318.9 269 60.6
Psat7g090920 Pisum sativum HOM05D004223 ORTHO05D004792 1.4e-84 317.4 292 57.9
TPR.G4831 Trifolium pratense HOM05D004223 ORTHO05D004792 2.6e-83 313.2 295 57.6
Zm00001eb153380 Zea mays HOM05D004223 ORTHO05D004792 5.9e-83 312.0 310 54.2
Potri.002G058500 Populus trichocarpa HOM05D004223 ORTHO05D004792 2.2e-82 310.1 298 58.1
Ca_06273_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 2.9e-82 309.7 307 53.4
CiPaw.09G126400 Carya illinoinensis HOM05D004223 ORTHO05D004792 1.1e-81 307.8 241 66.8
Os01g0751300 Oryza sativa ssp. japonica HOM05D004223 ORTHO05D004792 1.4e-81 307.4 308 54.5
THA.LOC104803347 Tarenaya hassleriana HOM05D004223 ORTHO05D004792 1.4e-81 307.4 325 50.5
Sed0009895 Sechium edule HOM05D004223 ORTHO05D004792 2.5e-81 306.6 295 58.3
MD17G1137300 Malus domestica HOM05D004223 ORTHO05D004792 1.6e-80 303.9 302 55.0
TWI53G0125 Tripterygium wilfordii HOM05D004223 ORTHO05D004792 1.6e-80 303.9 306 56.5
EL10Ac8g19745 Beta vulgaris HOM05D004223 ORTHO05D004792 3.5e-80 302.8 335 52.5
RcHm_v2.0_Chr2g0151741 Rosa chinensis HOM05D004223 ORTHO05D004792 3.5e-80 302.8 299 55.2
PGR042G1019 Punica granatum HOM05D004223 ORTHO05D004792 7.9e-80 301.6 306 54.2
Gorai.001G092500 Gossypium raimondii HOM05D004223 ORTHO05D004792 1.0e-79 301.2 293 56.3
TPR.G12676 Trifolium pratense HOM05D004223 ORTHO05D004792 1.8e-79 300.4 308 51.9
Gohir.A07G080900 Gossypium hirsutum HOM05D004223 ORTHO05D004792 2.3e-79 300.1 295 56.3
HPP92_021479 Vanilla planifolia HOM05D004223 ORTHO05D004792 3.9e-79 299.3 291 54.6
MSTRG.7472 Avicennia marina HOM05D004223 ORTHO05D004792 6.7e-79 298.5 237 64.1
FvH4_6g38510 Fragaria vesca HOM05D004223 ORTHO05D004792 8.7e-79 298.1 302 53.0
AT3G59090 Arabidopsis thaliana HOM05D004223 ORTHO05D004792 1.5e-78 297.4 312 52.6
AL5G40980 Arabidopsis lyrata HOM05D004223 ORTHO05D004792 1.9e-78 297.0 317 51.4
MELO3C019676.2 Cucumis melo HOM05D004223 ORTHO05D004792 1.9e-78 297.0 294 54.8
ClCG02G018450 Citrullus lanatus HOM05D004223 ORTHO05D004792 2.5e-78 296.6 295 54.2
QL08p044806 Quercus lobata HOM05D004223 ORTHO05D004792 2.5e-78 296.6 275 58.2
unitig_92.g28154 Utricularia gibba HOM05D004223 ORTHO05D004792 3.3e-78 296.2 290 53.1
Medtr5g091370 Medicago truncatula HOM05D004223 ORTHO05D004792 5.7e-78 295.4 306 50.7
Aa31LG1G24730 Aethionema arabicum HOM05D004223 ORTHO05D004792 7.4e-78 295.0 307 50.8
TAR624G0476 Trochodendron aralioides HOM05D004223 ORTHO05D004792 1.6e-77 293.9 244 63.5
Sed0004086 Sechium edule HOM05D004223 ORTHO05D004792 2.8e-77 293.1 293 54.9
Carub.0005s2585 Capsella rubella HOM05D004223 ORTHO05D004792 8.2e-77 291.6 343 48.4
Prupe.3G175100 Prunus persica HOM05D004223 ORTHO05D004792 1.5e-75 287.3 305 54.4
CARHR169510 Cardamine hirsuta HOM05D004223 ORTHO05D004792 2.0e-75 287.0 312 50.3
CsaV3_1G032560 Cucumis sativus L. HOM05D004223 ORTHO05D004792 2.0e-75 287.0 286 59.4
ATR0585G108 Amborella trichopoda HOM05D004223 ORTHO05D004792 2.6e-75 286.6 306 51.3
BraA07t30092Z Brassica rapa HOM05D000230 ORTHO05D000176 5.9e-75 285.4 301 51.8
Atru.chr6.2065 Acer truncatum HOM05D004223 ORTHO05D004792 2.2e-74 283.5 254 59.4
MELO3C002724.2 Cucumis melo HOM05D004223 ORTHO05D004792 2.9e-74 283.1 294 57.1
CsaV3_6G013790 Cucumis sativus L. HOM05D004223 ORTHO05D004792 5.0e-74 282.3 294 53.1
Psat2g016680 Pisum sativum HOM05D004223 ORTHO05D004792 6.5e-74 282.0 284 52.5
Sed0020532 Sechium edule HOM05D004223 ORTHO05D004792 1.4e-73 280.8 287 54.7
BcaC07g40242 Brassica carinata HOM05D004223 ORTHO05D004792 1.2e-72 277.7 301 50.8
Peaxi162Scf00214g01114 Petunia axillaris HOM05D004223 ORTHO05D004792 2.7e-72 276.6 243 63.0
A07p24480 Brassica napus HOM05D000230 ORTHO05D000176 7.9e-72 275.0 301 49.8
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 7.9e-72 275.0 301 49.5
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 7.9e-72 275.0 301 49.5
Thhalv10006050m.g Eutrema salsugineum HOM05D004223 ORTHO05D004792 7.9e-72 275.0 307 49.5
Sp5g03900 Schrenkiella parvula HOM05D004223 ORTHO05D004792 1.0e-71 274.6 311 49.5
C08p34260 Brassica napus HOM05D004223 ORTHO05D004792 1.4e-71 274.2 301 50.2
Gohir.D07G086500 Gossypium hirsutum HOM05D004223 ORTHO05D004792 1.8e-71 273.9 289 53.6
ClCG03G006980 Citrullus lanatus HOM05D004223 ORTHO05D004792 3.7e-69 266.2 286 55.2
SGA_v2.0_scaffold1G00153 Striga asiatica HOM05D004223 ORTHO05D004792 3.7e-69 266.2 305 51.5
BraA09t40587Z Brassica rapa HOM05D004223 ORTHO05D004792 1.8e-68 263.8 314 47.5
Duzib160G0026 Durio zibethinus HOM05D004223 ORTHO05D004792 2.4e-68 263.5 238 57.6
BolC8t51023H Brassica oleracea HOM05D004223 ORTHO05D004792 7.7e-67 258.5 335 45.1
BcaC07g40241 Brassica carinata HOM05D004223 ORTHO05D004792 1.3e-66 257.7 281 50.2
Ah.14g086580 Amaranthus hybridus HOM05D004223 ORTHO05D004792 1.7e-66 257.3 267 55.4
SalBow7G0638 Salvia bowleyana HOM05D004223 ORTHO05D004792 2.9e-66 256.5 196 65.3
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 6.5e-66 255.4 295 49.2
DCAR_003936 Daucus carota HOM05D004223 ORTHO05D004792 8.5e-66 255.0 211 66.8
Oeu046871.2 Olea europaea HOM05D004223 ORTHO05D004792 9.4e-65 251.5 219 63.5
A09p51500 Brassica napus HOM05D004223 ORTHO05D004792 2.7e-64 250.0 310 46.1
Pp3c6_6380 Physcomitrium patens HOM05D004223 ORTHO05D004792 6.7e-63 245.4 300 46.3
SMO296G0001 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 1.1e-60 238.0 295 44.7
Mapoly0056s0052 Marchantia polymorpha HOM05D004223 ORTHO05D004792 1.6e-59 234.2 327 41.6
BcaB02g07485 Brassica carinata HOM05D004223 ORTHO05D004792 4.5e-59 232.6 346 41.3
SGA_v2.0_scaffold333G49006 Striga asiatica HOM05D004223 ORTHO05D004792 2.9e-58 229.9 349 43.6
Pp3c5_22420 Physcomitrium patens HOM05D004223 ORTHO05D004792 3.8e-58 229.6 295 44.4
AUR62030243 Chenopodium quinoa HOM05D004223 ORTHO05D004792 1.9e-57 227.3 291 49.1
COL.COLO4_07169 Corchorus olitorius HOM05D000230 ORTHO05D000176 1.8e-55 220.7 235 52.8
Pp3c25_8320 Physcomitrium patens HOM05D004223 ORTHO05D004792 2.0e-54 217.2 310 42.6
Actinidia39561 Actinidia chinensis HOM05D004223 ORTHO05D004792 3.3e-54 216.5 258 51.2
CDE09G0669 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 9.7e-54 214.9 227 54.2
Hund21517 Selenicereus undatus HOM05D004223 ORTHO05D004792 2.2e-53 213.8 289 47.8
Sabra02G0047600 Salix brachista HOM05D004223 ORTHO05D004792 6.3e-53 212.2 212 57.5
FAN02G1578 Fragaria x ananassa HOM05D004223 ORTHO05D004792 4.1e-52 209.5 297 45.1
Eucgr.A02011 Eucalyptus grandis HOM05D004223 ORTHO05D004792 2.3e-47 193.7 219 54.8
FAN16G0695 Fragaria x ananassa HOM05D004223 ORTHO05D004792 4.0e-47 193.0 291 43.3
MSTRG.16215 Avicennia marina HOM05D004223 ORTHO05D004792 2.6e-46 190.3 135 68.1
COL.COLO4_06072 Corchorus olitorius HOM05D004223 ORTHO05D004792 2.4e-44 183.7 139 71.9
Actinidia22922 Actinidia chinensis HOM05D004223 ORTHO05D004792 2.5e-41 173.7 177 55.9
Atru.chr10.1338 Acer truncatum HOM05D004223 ORTHO05D004792 2.7e-40 170.2 134 61.9
Ca_18272_v3 Cicer arietinum L. HOM05D004223 ORTHO05D004792 3.6e-40 169.9 134 65.7
vmacro10944 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 8.0e-40 168.7 383 34.2
Atru.chr10.1339 Acer truncatum HOM05D004223 ORTHO05D004792 4.0e-39 166.4 131 65.6
unitig_37.g12104 Utricularia gibba HOM05D004223 ORTHO05D004792 2.0e-38 164.1 175 49.7
FAN21G3874 Fragaria x ananassa HOM05D004223 ORTHO05D004792 4.9e-37 159.5 156 58.3
Duzib138G1261 Durio zibethinus HOM05D004223 ORTHO05D004792 5.6e-33 146.0 284 37.3
CSS0012222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 2.6e-30 137.1 110 67.3
Oeu040112.1 Olea europaea HOM05D004223 ORTHO05D004792 2.6e-30 137.1 104 62.5
SMO174G0155 Selaginella moellendorffii HOM05D004223 ORTHO05D004792 1.7e-29 134.4 207 41.1
FAN14G4329 Fragaria x ananassa HOM05D004223 ORTHO05D004792 1.1e-28 131.7 298 34.6
CSS0013327 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 3.9e-26 123.2 133 58.6
MBI10_g27412_MAGBIO Magnolia biondii HOM05D004223 ORTHO05D004792 6.6e-26 122.5 165 50.9
Actinidia22925 Actinidia chinensis HOM05D004223 ORTHO05D004792 1.9e-25 120.9 77 71.4
Oeu040113.1 Olea europaea HOM05D004223 ORTHO05D004792 1.6e-24 117.9 106 59.4
FAN05G0022 Fragaria x ananassa HOM05D004223 ORTHO05D004792 6.8e-23 112.5 293 35.2
unitig_37.g12105 Utricularia gibba HOM05D004223 ORTHO05D004792 7.5e-22 109.0 111 55.0
Dinv05253 Davidia involucrata HOM05D004223 ORTHO05D004792 1.9e-20 104.4 82 65.9
Haze_05551 Corylus avellana HOM05D004223 ORTHO05D004792 3.2e-20 103.6 76 67.1
Dinv05252 Davidia involucrata HOM05D004223 ORTHO05D004792 1.0e-18 98.6 71 73.2
TPR.G14049 Trifolium pratense HOM05D004223 ORTHO05D004792 3.9e-18 96.7 104 47.1
PGSC0003DMG400012960 Solanum tuberosum HOM05D004223 ORTHO05D004792 1.9e-17 94.4 81 63.0
CDE02G0113 Ceratophyllum demersum HOM05D004223 ORTHO05D004792 2.5e-17 94.0 91 57.1
Haze_13521 Corylus avellana HOM05D004223 ORTHO05D004792 1.2e-14 85.1 79 54.4
QL05p059167 Quercus lobata HOM05D004223 ORTHO05D004792 4.4e-14 83.2 92 50.0
vmacro10943 Vaccinium macrocarpon HOM05D004223 ORTHO05D004792 1.3e-13 81.6 45 84.4
CSS0014222 Camellia sinensis var. sinensis HOM05D004223 ORTHO05D004792 1.4e-12 78.2 55 74.5
Sc08g0003460 Simmondsia chinensis HOM05D001248 ORTHO05D001183 1.2e-06 58.5 114 36.8
QL11p021264 Quercus lobata HOM05D001248 ORTHO05D001183 2.0e-06 57.8 299 23.7
SMO174G0183 Selaginella moellendorffii HOM05D010282 ORTHO05D004792 2.0e-06 57.8 193 27.5
AUR62013132 Chenopodium quinoa HOM05D001248 ORTHO05D001183 2.6e-06 57.4 147 31.3
Manes.07G031600 Manihot esculenta HOM05D001248 ORTHO05D001183 2.6e-06 57.4 288 24.3
CBR_g22030 Chara braunii HOM05D001248 ORTHO05D001183 3.4e-06 57.0 97 37.1
BcaC09g51201 Brassica carinata HOM05D001248 ORTHO05D001183 4.4e-06 56.6 113 34.5
A01p13130 Brassica napus HOM05D004749 ORTHO05D005995 4.4e-06 56.6 107 35.5
C01p15820 Brassica napus HOM05D004749 ORTHO05D005995 4.4e-06 56.6 113 34.5
AUR62021976 Chenopodium quinoa HOM05D001248 ORTHO05D001183 4.4e-06 56.6 282 27.0
Medtr4g131930 Medicago truncatula HOM05D001248 ORTHO05D001183 4.4e-06 56.6 292 23.6
Haze_10718 Corylus avellana HOM05D001248 ORTHO05D001183 7.6e-06 55.8 105 32.4
Mapoly0007s0062 Marchantia polymorpha HOM05D001248 ORTHO05D001183 7.6e-06 55.8 282 24.1
BraA01t01255Z Brassica rapa HOM05D001248 ORTHO05D001183 9.9e-06 55.5 300 25.3
Gohir.A03G174300 Gossypium hirsutum HOM05D001248 ORTHO05D001183 9.9e-06 55.5 95 37.9
GSVIVG01038795001 Vitis vinifera HOM05D001248 ORTHO05D001183 9.9e-06 55.5 105 35.2


User provided reference genes

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