Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G2709 Erigeron canadensis HOM05D005179 ORTHO05D006225 1.7e-75 286.6 228 100.0
ECA247G2094 Erigeron canadensis HOM05D005179 ORTHO05D006225 6.4e-22 108.6 252 53.6
Lsat_1_v5_gn_1_29921 Lactuca sativa HOM05D005179 ORTHO05D006225 1.2e-20 104.4 231 46.3
Nitab4.5_0002386g0020 Nicotiana tabacum HOM05D005179 ORTHO05D006225 4.7e-17 92.4 60 56.7
Nitab4.5_0001028g0210 Nicotiana tabacum HOM05D005179 ORTHO05D006225 8.1e-17 91.7 59 55.9
MSTRG.18220 Avicennia marina HOM05D005179 ORTHO05D006225 4.0e-16 89.4 57 61.4
Cc01_g19710 Coffea canephora HOM05D005179 ORTHO05D006225 4.0e-16 89.4 57 61.4
MD03G1268100 Malus domestica HOM05D005179 ORTHO05D006225 6.8e-16 88.6 60 60.0
Phvul.001G149300 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 6.8e-16 88.6 53 62.3
Dinv32955 Davidia involucrata HOM05D005179 ORTHO05D006225 1.2e-15 87.8 56 58.9
VMungo1383G3409 Vigna mungo HOM05D005179 ORTHO05D006225 1.5e-15 87.4 53 62.3
Atru.chr5.1383 Acer truncatum HOM05D005179 ORTHO05D006225 2.0e-15 87.0 59 55.9
TWI59G0379 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 2.0e-15 87.0 56 58.9
HanXRQChr15g0466391 Helianthus annuus HOM05D005179 ORTHO05D006225 3.4e-15 86.3 301 48.8
MD11G1289000 Malus domestica HOM05D000257 ORTHO05D009070 3.4e-15 86.3 60 55.0
Eucgr.K03387 Eucalyptus grandis HOM05D005179 ORTHO05D006225 5.8e-15 85.5 54 63.0
THA.LOC104817549 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 5.8e-15 85.5 58 60.3
TWI59G1208 Tripterygium wilfordii HOM05D005179 ORTHO05D006225 7.5e-15 85.1 51 68.6
PGR044G1538 Punica granatum HOM05D005179 ORTHO05D006225 1.3e-14 84.3 56 60.7
Dinv11251 Davidia involucrata HOM05D005179 ORTHO05D006225 1.7e-14 84.0 58 55.2
unitig_8.g3720 Utricularia gibba HOM05D005179 ORTHO05D006225 1.7e-14 84.0 54 59.3
Ciclev10024447m.g Citrus clementina HOM05D005179 ORTHO05D006225 2.2e-14 83.6 59 57.6
Prupe.8G243700 Prunus persica HOM05D005179 ORTHO05D006225 2.2e-14 83.6 54 61.1
Hma1.2p1_0628F.1_g191965 Hydrangea macrophylla HOM05D005179 ORTHO05D006225 2.9e-14 83.2 52 61.5
THA.LOC104802228 Tarenaya hassleriana HOM05D005179 ORTHO05D006225 2.9e-14 83.2 58 56.9
COL.COLO4_09131 Corchorus olitorius HOM05D005179 ORTHO05D006225 6.4e-14 82.0 54 57.4
MSTRG.21570 Avicennia marina HOM05D005179 ORTHO05D006225 8.3e-14 81.6 54 59.3
CsaV3_7G028640 Cucumis sativus L. HOM05D005179 ORTHO05D006225 8.3e-14 81.6 53 56.6
Duzib138G1054 Durio zibethinus HOM05D005179 ORTHO05D006225 8.3e-14 81.6 50 64.0
GSVIVG01011106001 Vitis vinifera HOM05D005179 ORTHO05D006225 8.3e-14 81.6 58 53.4
CANSAT25G0479 Cannabis sativa HOM05D005179 ORTHO05D006225 1.1e-13 81.3 51 60.8
CSS0035012 Camellia sinensis var. sinensis HOM05D005179 ORTHO05D006225 1.9e-13 80.5 61 52.5
PGSC0003DMG400020123 Solanum tuberosum HOM05D005179 ORTHO05D006225 1.9e-13 80.5 59 49.2
Glyma.19G154300 Glycine max HOM05D005179 ORTHO05D006225 2.4e-13 80.1 50 60.0
Lj1g0021337 Lotus japonicus HOM05D005179 ORTHO05D006225 2.4e-13 80.1 56 57.1
Lj5g0012316 Lotus japonicus HOM05D005179 ORTHO05D006225 2.4e-13 80.1 52 53.8
Glyma.03G151700 Glycine max HOM05D005179 ORTHO05D006225 3.2e-13 79.7 53 58.5
Lalb_Chr21g0306521 Lupinus albus HOM05D005179 ORTHO05D006225 3.2e-13 79.7 52 53.8
Potri.014G139100 Populus trichocarpa HOM05D005179 ORTHO05D006225 3.2e-13 79.7 54 57.4
Sabra14G0104900 Salix brachista HOM05D005179 ORTHO05D006225 3.2e-13 79.7 49 63.3
Lalb_Chr01g0020211 Lupinus albus HOM05D005179 ORTHO05D006225 4.1e-13 79.3 51 56.9
Ca_08572_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 7.1e-13 78.6 52 55.8
Potri.014G139200 Populus trichocarpa HOM05D005179 ORTHO05D006225 7.1e-13 78.6 49 61.2
MELO3C015854.2 Cucumis melo HOM05D005179 ORTHO05D006225 9.2e-13 78.2 55 56.4
FvH4_2g23841 Fragaria vesca HOM05D005179 ORTHO05D006225 9.2e-13 78.2 52 57.7
Potri.002G215200 Populus trichocarpa HOM05D005179 ORTHO05D006225 9.2e-13 78.2 49 61.2
Sopen02g023170 Solanum pennellii HOM05D005179 ORTHO05D006225 9.2e-13 78.2 56 51.8
A07p26240 Brassica napus HOM05D005179 ORTHO05D006225 1.2e-12 77.8 51 58.8
C06p28620 Brassica napus HOM05D005179 ORTHO05D006225 1.2e-12 77.8 51 58.8
BolC6t38030H Brassica oleracea HOM05D005179 ORTHO05D006225 1.2e-12 77.8 51 58.8
BraA07t30267Z Brassica rapa HOM05D005179 ORTHO05D006225 1.2e-12 77.8 51 58.8
ClCG07G000210 Citrullus lanatus HOM05D005179 ORTHO05D006225 1.2e-12 77.8 58 53.4
FAN20G2888 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.6e-12 77.4 52 57.7
FAN24G3244 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.6e-12 77.4 52 57.7
Lalb_Chr25g0290231 Lupinus albus HOM05D005179 ORTHO05D006225 1.6e-12 77.4 51 54.9
Sabra02G0167400 Salix brachista HOM05D005179 ORTHO05D006225 1.6e-12 77.4 49 57.1
CAN.G609.9 Capsicum annuum HOM05D005179 ORTHO05D006225 2.1e-12 77.0 54 55.6
Thecc.01G282700 Theobroma cacao HOM05D005179 ORTHO05D006225 2.1e-12 77.0 54 55.6
Aa31LG10G16940 Aethionema arabicum HOM05D005179 ORTHO05D006225 2.7e-12 76.6 53 52.8
A04p00290 Brassica napus HOM05D005179 ORTHO05D006225 2.7e-12 76.6 51 58.8
C04p30120 Brassica napus HOM05D005179 ORTHO05D006225 2.7e-12 76.6 51 58.8
BolC4t24544H Brassica oleracea HOM05D005179 ORTHO05D006225 2.7e-12 76.6 51 58.8
BraA04t15748Z Brassica rapa HOM05D005179 ORTHO05D006225 2.7e-12 76.6 51 58.8
FAN27G1844 Fragaria x ananassa HOM05D005179 ORTHO05D006225 2.7e-12 76.6 52 55.8
CiPaw.07G093600 Carya illinoinensis HOM05D005179 ORTHO05D006225 3.5e-12 76.3 196 44.4
Gohir.A11G121400 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.5e-12 76.3 56 53.6
A09p54910 Brassica napus HOM05D000257 ORTHO05D009070 4.6e-12 75.9 51 54.9
BraA09t40901Z Brassica rapa HOM05D000257 ORTHO05D009070 4.6e-12 75.9 51 54.9
CARHR173410 Cardamine hirsuta HOM05D005179 ORTHO05D006225 4.6e-12 75.9 51 56.9
CiPaw.08G103900 Carya illinoinensis HOM05D005179 ORTHO05D006225 4.6e-12 75.9 62 46.8
Gorai.007G135300 Gossypium raimondii HOM05D005179 ORTHO05D006225 4.6e-12 75.9 56 53.6
Actinidia21103 Actinidia chinensis HOM05D000756 ORTHO05D000604 6.0e-12 75.5 52 53.8
Ah.08g213000 Amaranthus hybridus HOM05D005179 ORTHO05D006225 6.0e-12 75.5 53 56.6
AL5G45930 Arabidopsis lyrata HOM05D005179 ORTHO05D006225 6.0e-12 75.5 51 54.9
AT3G63095 Arabidopsis thaliana HOM05D005179 ORTHO05D006225 6.0e-12 75.5 51 54.9
Carub.0005s2976 Capsella rubella HOM05D005179 ORTHO05D006225 6.0e-12 75.5 51 54.9
RcHm_v2.0_Chr6g0291441 Rosa chinensis HOM05D005179 ORTHO05D006225 6.0e-12 75.5 51 56.9
TPR.G1598 Trifolium pratense HOM05D005179 ORTHO05D006225 6.0e-12 75.5 49 55.1
C08p37810 Brassica napus HOM05D000257 ORTHO05D009070 7.8e-12 75.1 51 54.9
BolC8t51360H Brassica oleracea HOM05D000257 ORTHO05D009070 7.8e-12 75.1 51 54.9
SalBow6G3683 Salvia bowleyana HOM05D005179 ORTHO05D006225 7.8e-12 75.1 51 54.9
Manes.05G074000 Manihot esculenta HOM05D005179 ORTHO05D006225 1.0e-11 74.7 51 54.9
Glyma.02G148700 Glycine max HOM05D005179 ORTHO05D006225 1.3e-11 74.3 49 51.0
Gohir.A12G005800 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.3e-11 74.3 58 51.7
Gohir.D11G126500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.3e-11 74.3 52 55.8
Gohir.D12G005300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.3e-11 74.3 58 51.7
Gorai.008G005200 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.3e-11 74.3 58 51.7
Gorai.009G014800 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.3e-11 74.3 58 51.7
Medtr7g094650 Medicago truncatula HOM05D005179 ORTHO05D006225 1.3e-11 74.3 49 53.1
Sopen09g026600 Solanum pennellii HOM05D005179 ORTHO05D006225 1.3e-11 74.3 50 58.0
FAN15G0349 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.7e-11 73.9 52 55.8
FAN15G1538 Fragaria x ananassa HOM05D005179 ORTHO05D006225 1.7e-11 73.9 52 55.8
Glyma.10G025200 Glycine max HOM05D005179 ORTHO05D006225 1.7e-11 73.9 49 51.0
Phvul.007G170000 Phaseolus vulgaris HOM05D005179 ORTHO05D006225 1.7e-11 73.9 50 46.0
SalBow4G1980 Salvia bowleyana HOM05D005179 ORTHO05D006225 1.7e-11 73.9 51 54.9
Sc24g0004150 Simmondsia chinensis HOM05D005179 ORTHO05D006225 1.7e-11 73.9 57 47.4
Solyc09g064900.1 Solanum lycopersicum HOM05D005179 ORTHO05D006225 2.3e-11 73.6 48 58.3
Rhsim13G0023300 Rhododendron simsii HOM05D005179 ORTHO05D006225 3.0e-11 73.2 57 52.6
Sed0002169 Sechium edule HOM05D005179 ORTHO05D006225 3.0e-11 73.2 58 48.3
ClCG09G006920 Citrullus lanatus HOM05D000257 ORTHO05D009070 3.9e-11 72.8 52 51.9
Haze_04736 Corylus avellana HOM05D005179 ORTHO05D006225 3.9e-11 72.8 55 52.7
DCAR_002746 Daucus carota HOM05D005179 ORTHO05D006225 3.9e-11 72.8 54 51.9
Sed0008634 Sechium edule HOM05D005179 ORTHO05D006225 3.9e-11 72.8 57 45.6
Psat3g065120 Pisum sativum HOM05D005179 ORTHO05D006225 5.1e-11 72.4 49 53.1
Psat6g061040 Pisum sativum HOM05D005179 ORTHO05D006225 5.1e-11 72.4 55 52.7
TAR636G3147 Trochodendron aralioides HOM05D005179 ORTHO05D006225 5.1e-11 72.4 54 53.7
DCAR_018411 Daucus carota HOM05D005179 ORTHO05D006225 6.6e-11 72.0 51 54.9
Zm00001eb329500 Zea mays HOM05D005179 ORTHO05D006225 6.6e-11 72.0 48 54.2
Ah.15g091740 Amaranthus hybridus HOM05D005179 ORTHO05D006225 8.6e-11 71.6 52 51.9
Migut.D00272 Erythranthe guttata HOM05D005179 ORTHO05D006225 8.6e-11 71.6 57 49.1
Os07g0655800 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 8.6e-11 71.6 48 54.2
Zm00001eb017420 Zea mays HOM05D005179 ORTHO05D006225 8.6e-11 71.6 48 58.3
VMungo0720G0860 Vigna mungo HOM05D005179 ORTHO05D006225 1.1e-10 71.2 48 47.9
Potri.004G022700 Populus trichocarpa HOM05D005179 ORTHO05D006225 1.5e-10 70.9 49 55.1
Rhsim01G0275800 Rhododendron simsii HOM05D000756 ORTHO05D000604 1.5e-10 70.9 61 47.5
Ca_09769_v3 Cicer arietinum L. HOM05D005179 ORTHO05D006225 1.9e-10 70.5 49 51.0
Cfa006114 Carpinus fangiana HOM05D005179 ORTHO05D006225 2.5e-10 70.1 54 51.9
Gohir.A08G069300 Gossypium hirsutum HOM05D005179 ORTHO05D006225 3.3e-10 69.7 57 43.9
Medtr1g032050 Medicago truncatula HOM05D005179 ORTHO05D006225 3.3e-10 69.7 49 53.1
Medtr1g032400 Medicago truncatula HOM05D005179 ORTHO05D006225 3.3e-10 69.7 49 53.1
Oeu015958.1 Olea europaea HOM05D005179 ORTHO05D006225 4.3e-10 69.3 58 46.6
Sc05g0004870 Simmondsia chinensis HOM05D005179 ORTHO05D006225 5.6e-10 68.9 51 49.0
Sed0008870 Sechium edule HOM05D005179 ORTHO05D006225 7.3e-10 68.6 55 50.9
SGA_v2.0_scaffold80G25940 Striga asiatica HOM05D005179 ORTHO05D006225 7.3e-10 68.6 53 50.9
Aqoxy5G00531 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 9.5e-10 68.2 50 54.0
Zm00001eb394420 Zea mays HOM05D005179 ORTHO05D006225 9.5e-10 68.2 48 54.2
PSO210G7214 Papaver somniferum HOM05D005179 ORTHO05D006225 1.2e-09 67.8 52 46.2
PSO832G0665 Papaver somniferum HOM05D005179 ORTHO05D006225 1.2e-09 67.8 52 46.2
Gohir.D08G077500 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.6e-09 67.4 55 45.5
Gorai.004G082400 Gossypium raimondii HOM05D005179 ORTHO05D006225 1.6e-09 67.4 55 45.5
Os03g0357500 Oryza sativa ssp. japonica HOM05D005179 ORTHO05D006225 1.6e-09 67.4 48 52.1
Manes.01G209200 Manihot esculenta HOM05D005179 ORTHO05D006225 2.1e-09 67.0 52 48.1
SGA_v2.0_scaffold11G05800 Striga asiatica HOM05D005179 ORTHO05D006225 2.1e-09 67.0 49 55.1
Oeu028081.1 Olea europaea HOM05D005179 ORTHO05D006225 4.7e-09 65.9 53 49.1
arahy.Tifrunner.gnm1.ann1.YN028F Arachis hypogaea HOM05D000257 ORTHO05D009070 8.1e-09 65.1 49 49.0
Manes.01G209300 Manihot esculenta HOM05D005179 ORTHO05D006225 8.1e-09 65.1 45 53.3
Gohir.D08G077600 Gossypium hirsutum HOM05D005179 ORTHO05D006225 1.1e-08 64.7 57 40.4
Aqoxy2G03259 Aquilegia oxysepala HOM05D005179 ORTHO05D006225 1.4e-08 64.3 52 50.0
PSO210G2426 Papaver somniferum HOM05D005179 ORTHO05D006225 1.4e-08 64.3 51 43.1
Migut.N02158 Erythranthe guttata HOM05D005179 ORTHO05D006225 1.8e-08 63.9 48 50.0
SGA_v2.0_scaffold258G45766 Striga asiatica HOM05D005179 ORTHO05D006225 1.8e-08 63.9 49 44.9
PSO447G0321 Papaver somniferum HOM05D005179 ORTHO05D006225 2.3e-08 63.5 48 43.8
Manes.05G074200 Manihot esculenta HOM05D005179 ORTHO05D006225 3.1e-08 63.2 52 44.2
Actinidia00740 Actinidia chinensis HOM05D005179 ORTHO05D006225 4.0e-08 62.8 49 53.1
Gorai.004G082500 Gossypium raimondii HOM05D005179 ORTHO05D006225 4.0e-08 62.8 57 40.4
arahy.Tifrunner.gnm1.ann1.AZF37F Arachis hypogaea HOM05D000257 ORTHO05D009070 5.2e-08 62.4 48 47.9
Cpa.g.sc64.166 Carica papaya HOM05D005179 ORTHO05D006225 5.2e-08 62.4 46 52.2
Gohir.A08G069200 Gossypium hirsutum HOM05D005179 ORTHO05D006225 8.9e-08 61.6 49 49.0
QL12p022365 Quercus lobata HOM05D005179 ORTHO05D006225 1.2e-07 61.2 45 55.6
Nn1g02158 Nelumbo nucifera HOM05D005179 ORTHO05D006225 1.5e-07 60.8 50 44.0
Nn4g26188 Nelumbo nucifera HOM05D005179 ORTHO05D006225 4.4e-07 59.3 46 47.8
HPP92_008197 Vanilla planifolia HOM05D024720 ORTHO05D006225 2.9e-06 56.6 50 42.0


User provided reference genes

Program Settings