Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 0.0e+00 1582.0 771 100.0
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1092.0 823 67.6
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 2.1e-295 1018.8 874 61.7
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 7.3e-288 993.8 867 61.4
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 7.6e-285 983.8 867 60.3
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 2.4e-278 962.2 867 59.5
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 1.9e-272 942.6 864 57.6
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 8.1e-271 937.2 865 57.0
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 1.2e-269 933.3 850 58.2
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 1.7e-268 929.5 858 57.0
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 1.5e-261 906.4 861 55.6
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 1.0e-260 903.7 859 56.8
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 1.3e-260 903.3 860 56.7
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 6.5e-260 901.0 877 55.1
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 1.2e-258 896.7 849 55.8
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 1.0e-257 893.6 864 56.2
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 3.0e-257 892.1 840 56.7
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 6.7e-257 891.0 861 55.2
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 1.9e-256 889.4 866 54.8
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 3.7e-255 885.2 862 55.2
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 6.3e-255 884.4 848 56.0
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 1.1e-254 883.6 863 54.7
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 1.8e-254 882.9 863 55.4
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 3.1e-254 882.1 870 55.3
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 3.4e-253 878.6 812 57.1
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 7.6e-253 877.5 860 54.3
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 1.0e-252 877.1 862 55.3
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 1.0e-252 877.1 812 57.0
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.2e-252 875.9 864 54.6
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 2.9e-252 875.5 898 53.2
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 1.9e-251 872.8 864 54.6
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 1.9e-251 872.8 866 54.2
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 1.9e-251 872.8 841 56.5
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 5.5e-251 871.3 864 54.5
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 1.6e-250 869.8 859 54.6
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 2.1e-250 869.4 889 53.0
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 1.0e-249 867.1 875 54.3
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 1.1e-248 863.6 821 57.0
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 1.1e-248 863.6 826 55.1
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 3.3e-248 862.1 842 55.1
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 5.7e-248 861.3 877 52.6
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 2.2e-247 859.4 905 51.7
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 3.7e-247 858.6 835 55.6
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 4.8e-247 858.2 805 56.0
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 6.3e-247 857.8 866 53.5
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 1.4e-246 856.7 875 53.5
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 1.4e-246 856.7 865 53.9
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 1.4e-246 856.7 873 53.4
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 1.8e-246 856.3 860 54.3
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 1.2e-245 853.6 865 53.1
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 2.0e-245 852.8 876 53.4
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 3.4e-245 852.0 879 52.8
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 5.9e-245 851.3 849 54.5
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 1.3e-244 850.1 800 57.4
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 1.7e-244 849.7 871 54.2
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 3.8e-244 848.6 866 53.2
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 8.5e-244 847.4 907 52.7
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 1.1e-243 847.0 885 53.0
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 7.2e-243 844.3 801 56.8
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 9.4e-243 844.0 862 52.7
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 1.2e-242 843.6 862 53.2
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 1.6e-242 843.2 870 52.9
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 2.7e-242 842.4 872 53.3
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 2.7e-242 842.4 869 53.3
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 2.7e-242 842.4 857 54.8
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 3.6e-242 842.0 861 53.1
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 4.6e-242 841.6 863 52.8
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 6.1e-242 841.3 868 53.1
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 1.4e-241 840.1 865 53.1
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 1.4e-241 840.1 852 54.6
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 3.9e-241 838.6 884 52.9
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 5.1e-241 838.2 890 52.9
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 6.7e-241 837.8 798 56.8
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 1.5e-240 836.6 852 53.5
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 2.0e-240 836.3 849 53.4
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 2.0e-240 836.3 849 53.2
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 4.4e-240 835.1 866 52.5
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 9.7e-240 833.9 877 51.9
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 1.3e-239 833.6 899 51.9
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 2.8e-239 832.4 799 56.4
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 6.3e-239 831.2 890 52.0
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 8.2e-239 830.9 867 53.4
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 3.1e-238 828.9 785 55.9
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 9.1e-238 827.4 866 52.7
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 1.5e-237 826.6 888 52.8
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 4.5e-237 825.1 826 55.1
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 2.2e-236 822.8 823 54.9
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 6.5e-236 821.2 897 50.9
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 1.1e-235 820.5 871 52.6
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 1.1e-235 820.5 852 53.1
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 1.4e-235 820.1 874 52.5
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 1.9e-235 819.7 871 51.9
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 9.4e-235 817.4 864 52.8
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 9.4e-235 817.4 857 52.0
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 1.2e-234 817.0 859 52.3
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 1.8e-233 813.1 880 52.3
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 2.3e-233 812.8 850 51.9
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 6.7e-233 811.2 874 52.1
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 8.8e-233 810.8 869 52.4
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 2.0e-232 809.7 858 51.6
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 3.3e-232 808.9 871 50.3
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 5.7e-232 808.1 867 51.8
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 7.4e-232 807.7 847 53.7
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 1.7e-231 806.6 836 53.8
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 2.8e-231 805.8 849 53.4
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 8.2e-231 804.3 847 53.6
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 1.4e-230 803.5 747 56.0
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 2.4e-230 802.7 860 50.5
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 3.1e-230 802.4 840 53.3
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 4.1e-230 802.0 883 51.4
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 9.1e-230 800.8 840 53.0
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 1.2e-229 800.4 873 51.1
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 2.0e-229 799.7 817 53.7
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 3.5e-229 798.9 843 52.0
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 5.9e-229 798.1 855 50.8
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 6.7e-225 784.6 859 51.1
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 1.2e-224 783.9 767 55.4
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 6.3e-223 778.1 867 50.2
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 6.3e-223 778.1 807 53.0
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 4.5e-221 771.9 618 63.6
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 7.2e-219 764.6 588 65.3
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 2.7e-218 762.7 951 46.0
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 5.2e-217 758.4 801 51.6
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 1.3e-212 743.8 865 48.0
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 1.7e-207 726.9 942 45.0
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 2.2e-207 726.5 868 49.1
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 2.8e-207 726.1 828 48.4
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 7.8e-205 718.0 859 48.5
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 8.6e-204 714.5 810 48.9
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 2.0e-200 703.4 797 49.7
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 1.7e-199 700.3 815 50.3
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 6.8e-193 678.3 867 45.8
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 9.8e-192 674.5 624 54.6
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.7e-191 673.7 770 49.7
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 1.7e-191 673.7 808 46.2
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 2.4e-190 669.8 831 45.1
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 3.6e-186 656.0 624 53.8
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 2.0e-184 650.2 828 45.9
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 8.3e-183 644.8 793 45.4
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 2.7e-181 639.8 901 42.5
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 2.6e-176 623.2 780 45.8
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 6.9e-169 598.6 570 52.3
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 4.3e-163 579.3 840 40.5
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 6.9e-161 572.0 569 54.1
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 3.8e-159 566.2 842 39.7
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 2.3e-156 557.0 595 51.8
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 5.3e-153 545.8 851 38.4
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 1.5e-147 527.7 625 44.5
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 3.7e-146 523.1 742 42.3
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 1.2e-144 518.1 520 52.9
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 2.3e-132 477.2 570 48.9
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 6.5e-111 406.0 569 39.9
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 3.7e-90 337.0 578 33.9
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 4.0e-84 317.0 467 43.0
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 2.2e-82 311.2 264 56.8
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.5e-78 298.5 225 60.4
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.5e-75 288.5 383 44.4
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.7e-74 285.0 469 36.2
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 1.6e-72 278.5 401 43.6
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 8.6e-71 272.7 414 40.3
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 4.7e-69 266.9 695 27.9
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 3.1e-68 264.2 271 50.2
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 3.3e-62 244.2 175 64.0
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 2.5e-54 218.0 156 67.3
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 4.9e-50 203.8 495 27.7
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 3.6e-45 187.6 532 25.4
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 1.6e-29 135.6 174 47.7
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 1.8e-20 105.5 112 50.9
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 2.4e-20 105.1 74 68.9
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 5.3e-20 104.0 115 52.2
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 3.6e-16 91.3 71 63.4
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 2.2e-10 72.0 205 32.2


User provided reference genes

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