Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 8.0e-299 1029.6 512 100.0
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 1.1e-194 683.7 563 64.3
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 5.8e-164 581.6 539 57.3
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 3.2e-162 575.9 528 58.1
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 4.1e-154 548.9 467 61.2
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 1.9e-151 540.0 552 53.3
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 1.7e-147 526.9 550 52.2
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 3.2e-146 522.7 544 51.3
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 4.1e-146 522.3 550 51.1
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 7.1e-146 521.5 550 51.1
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.7e-145 519.6 549 50.6
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 2.7e-145 519.6 545 52.3
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 4.6e-145 518.8 549 51.4
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 7.8e-145 518.1 545 52.5
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 2.3e-144 516.5 559 51.7
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 1.9e-143 513.5 546 51.8
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 2.5e-143 513.1 544 51.3
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 2.1e-142 510.0 550 50.7
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 2.1e-142 510.0 548 50.7
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 2.1e-142 510.0 544 50.9
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 2.4e-141 506.5 534 50.9
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 3.1e-141 506.1 541 51.0
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 2.0e-140 503.4 534 50.6
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 9.9e-140 501.1 592 47.1
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 3.8e-139 499.2 549 50.3
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 3.8e-139 499.2 545 50.1
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 6.4e-139 498.4 562 49.5
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 8.4e-139 498.0 536 50.2
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 8.4e-139 498.0 559 51.0
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 1.1e-138 497.7 514 54.1
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 5.4e-138 495.4 496 53.8
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 1.2e-137 494.2 535 50.7
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 1.2e-137 494.2 535 49.2
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 1.6e-137 493.8 554 48.6
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 6.0e-137 491.9 581 47.3
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 6.0e-137 491.9 540 49.3
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 7.8e-137 491.5 546 48.9
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 1.7e-136 490.3 551 48.5
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 1.7e-136 490.3 535 49.3
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 3.0e-136 489.6 544 48.9
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 6.6e-136 488.4 557 49.2
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 8.7e-136 488.0 562 49.8
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 1.5e-135 487.3 594 46.5
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 4.3e-135 485.7 558 49.1
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 2.1e-134 483.4 559 49.0
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 2.8e-134 483.0 570 49.3
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 1.4e-133 480.7 531 49.3
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 2.0e-132 476.9 556 48.9
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 2.6e-132 476.5 539 48.8
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 1.3e-131 474.2 492 51.6
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 1.3e-131 474.2 540 48.9
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 1.7e-131 473.8 541 48.4
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 1.9e-130 470.3 588 46.9
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 1.9e-130 470.3 567 47.1
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 5.4e-130 468.8 500 50.8
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 9.3e-130 468.0 585 45.6
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 2.1e-129 466.8 595 46.1
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 1.8e-128 463.8 485 50.7
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 1.3e-126 457.6 524 48.5
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 2.8e-126 456.4 445 54.6
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 6.2e-126 455.3 547 47.2
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.1e-125 454.5 547 47.0
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 2.6e-124 449.9 495 49.7
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 9.9e-124 448.0 501 48.9
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 1.3e-123 447.6 444 56.3
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 1.3e-120 437.6 550 46.9
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 3.0e-120 436.4 438 53.2
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 3.9e-120 436.0 472 49.6
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 8.7e-120 434.9 547 45.3
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 1.6e-118 430.6 507 46.9
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 2.0e-116 423.7 536 46.3
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 3.4e-116 422.9 550 45.8
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 7.6e-116 421.8 524 45.2
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.1e-114 417.9 539 44.9
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 2.5e-114 416.8 547 44.1
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 2.7e-113 413.3 526 44.3
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 4.6e-113 412.5 528 43.9
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 1.5e-111 407.5 542 44.5
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 9.6e-111 404.8 528 43.2
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 1.8e-109 400.6 537 42.5
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 3.4e-108 396.4 488 47.5
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 2.9e-107 393.3 548 42.3
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 2.9e-107 393.3 537 43.8
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 5.0e-107 392.5 544 42.5
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 5.0e-107 392.5 544 42.5
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 1.1e-106 391.3 541 43.6
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 3.6e-105 386.3 544 42.3
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 3.6e-105 386.3 544 42.3
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 1.9e-103 380.6 539 41.7
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 4.3e-103 379.4 414 50.2
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 7.4e-103 378.6 431 48.5
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 1.8e-101 374.0 545 40.7
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 9.1e-101 371.7 539 41.7
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 2.6e-100 370.2 508 43.1
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 1.4e-98 364.4 428 47.0
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 1.2e-97 361.3 457 45.3
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 1.4e-96 357.8 352 52.8
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 2.3e-96 357.1 481 43.7
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 8.8e-96 355.1 562 40.6
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 2.4e-93 347.1 459 45.8
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 1.7e-91 340.9 466 43.3
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 3.8e-91 339.7 442 44.1
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 5.0e-91 339.3 515 41.4
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 5.0e-91 339.3 503 39.0
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 6.5e-91 339.0 532 40.6
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 2.7e-89 333.6 431 45.0
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 5.7e-87 325.9 512 38.5
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 1.4e-85 321.2 451 42.6
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 1.8e-85 320.9 482 38.6
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 3.7e-78 296.6 411 41.6
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 6.3e-78 295.8 411 41.1
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 1.2e-76 291.6 555 35.0
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 1.7e-75 287.7 389 42.9
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 3.2e-74 283.5 559 33.8
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 3.6e-73 280.0 462 38.3
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 2.4e-69 267.3 263 54.0
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 2.3e-67 260.8 427 40.3
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 6.1e-65 252.7 426 39.7
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 8.0e-65 252.3 221 58.4
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 4.9e-62 243.0 272 48.2
vmacro21130 Vaccinium macrocarpon HOM05D005024 ORTHO05D006396 1.1e-58 231.9 311 44.4
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 1.1e-53 215.3 370 38.9
unitig_46.g18535 Utricularia gibba HOM05D005024 ORTHO05D006396 2.5e-50 204.1 353 38.8
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 2.3e-48 197.6 370 35.4
unitig_46.g18534 Utricularia gibba HOM05D005024 ORTHO05D006396 3.5e-44 183.7 161 60.2
Carub.0005s0971 Capsella rubella HOM05D005024 ORTHO05D006396 7.3e-42 176.0 192 47.4
CAN.G348.11 Capsicum annuum HOM05D005024 ORTHO05D006396 4.1e-37 160.2 298 35.2
TPR.G3563 Trifolium pratense HOM05D005024 ORTHO05D006396 2.1e-28 131.3 124 54.0
TPR.G26130 Trifolium pratense HOM05D005024 ORTHO05D006396 1.7e-27 128.3 97 60.8
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 2.0e-23 114.8 352 27.8
CBR_g899 Chara braunii HOM05D005024 ORTHO05D006396 1.0e-19 102.4 176 35.8
SHI08483 Sapria himalayana HOM05D005024 ORTHO05D006396 5.6e-18 96.7 208 32.7
PSO198G0133 Papaver somniferum HOM05D005024 ORTHO05D006396 2.4e-16 91.3 69 68.1
Cpa.g.sc82.17 Carica papaya HOM05D005024 ORTHO05D006396 4.5e-15 87.0 71 60.6
AUR62020278 Chenopodium quinoa HOM05D005024 ORTHO05D006396 3.2e-13 80.9 67 58.2
AUR62037727 Chenopodium quinoa HOM05D005024 ORTHO05D006396 9.3e-13 79.3 67 55.2
GSVIVG01035496001 Vitis vinifera HOM05D005024 ORTHO05D006396 3.3e-10 70.9 40 80.0
Carub.0004s0613 Capsella rubella HOM05D005024 ORTHO05D006396 1.6e-09 68.6 73 49.3
ATR0053G014 Amborella trichopoda HOM05D005024 ORTHO05D006396 2.1e-09 68.2 56 60.7
TPR.G26129 Trifolium pratense HOM05D005024 ORTHO05D006396 9.0e-08 62.8 81 46.9
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 6.4e-06 56.6 101 36.6


User provided reference genes

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