Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 1.2e-59 233.0 125 100.0
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 2.1e-43 179.1 125 82.4
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 2.0e-41 172.6 127 80.3
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 2.8e-35 152.1 125 69.6
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.8e-35 152.1 125 69.6
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.7e-35 151.4 125 69.6
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 1.4e-34 149.8 124 72.6
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.8e-34 149.4 124 69.4
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.2e-34 147.9 126 69.8
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.2e-34 147.9 124 70.2
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 6.8e-34 147.5 125 68.8
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 8.9e-34 147.1 128 68.8
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 1.5e-33 146.4 124 68.5
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.5e-33 146.4 124 68.5
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 4.4e-33 144.8 124 68.5
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 7.5e-33 144.1 125 68.8
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.8e-33 143.7 125 68.8
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.8e-33 143.7 125 68.8
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 9.8e-33 143.7 126 67.5
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 2.8e-32 142.1 127 66.9
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.8e-32 142.1 125 68.0
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.8e-32 142.1 125 68.0
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 3.7e-32 141.7 125 67.2
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 6.3e-32 141.0 125 68.8
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 6.3e-32 141.0 127 66.1
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 6.3e-32 141.0 128 66.4
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.3e-32 140.6 125 68.0
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 8.3e-32 140.6 125 66.4
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.4e-31 139.8 128 67.2
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 1.8e-31 139.4 127 65.4
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 1.8e-31 139.4 128 65.6
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 2.4e-31 139.0 128 61.7
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 2.4e-31 139.0 124 62.9
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 3.1e-31 138.7 126 65.9
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 4.1e-31 138.3 128 64.1
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 4.1e-31 138.3 130 65.4
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 9.2e-31 137.1 128 67.2
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.2e-30 136.7 126 66.7
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 1.6e-30 136.3 125 68.0
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 1.6e-30 136.3 126 62.7
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.0e-30 136.0 126 67.5
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 2.7e-30 135.6 121 66.1
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 3.5e-30 135.2 126 64.3
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 3.5e-30 135.2 124 63.7
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 3.5e-30 135.2 124 63.7
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 3.5e-30 135.2 128 63.3
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 4.5e-30 134.8 130 63.8
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 4.5e-30 134.8 126 67.5
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 4.5e-30 134.8 127 66.9
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 5.9e-30 134.4 127 60.6
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 5.9e-30 134.4 121 65.3
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.3e-29 133.3 106 70.8
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 1.3e-29 133.3 127 62.2
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 1.3e-29 133.3 127 63.0
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 1.7e-29 132.9 127 63.8
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.7e-29 132.9 124 65.3
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 2.3e-29 132.5 124 61.3
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 2.3e-29 132.5 124 61.3
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 2.3e-29 132.5 124 61.3
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 2.3e-29 132.5 127 59.8
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 2.3e-29 132.5 127 62.2
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 2.3e-29 132.5 126 64.3
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 2.3e-29 132.5 123 63.4
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 2.9e-29 132.1 128 63.3
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 2.9e-29 132.1 128 63.3
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 2.9e-29 132.1 125 64.0
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 2.9e-29 132.1 127 64.6
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 5.0e-29 131.3 124 63.7
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 6.6e-29 131.0 123 65.0
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 6.6e-29 131.0 126 65.9
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 6.6e-29 131.0 127 64.6
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 8.6e-29 130.6 123 58.5
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 8.6e-29 130.6 128 63.3
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 8.6e-29 130.6 123 58.5
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 1.1e-28 130.2 122 63.9
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.1e-28 130.2 126 65.1
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 1.5e-28 129.8 125 62.4
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.5e-28 129.8 129 65.9
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 1.5e-28 129.8 128 64.8
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 1.5e-28 129.8 128 60.2
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.5e-28 129.8 129 62.8
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 1.9e-28 129.4 129 64.3
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 2.5e-28 129.0 123 57.7
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 2.5e-28 129.0 125 65.6
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 3.3e-28 128.6 127 57.5
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 3.3e-28 128.6 127 63.0
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 3.3e-28 128.6 127 63.0
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 9.5e-28 127.1 120 62.5
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 1.2e-27 126.7 129 58.9
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 2.1e-27 125.9 126 61.1
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 2.1e-27 125.9 122 62.3
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 4.7e-27 124.8 126 59.5
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 4.7e-27 124.8 106 66.0
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 6.1e-27 124.4 107 66.4
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 1.0e-26 123.6 124 58.9
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 1.8e-26 122.9 122 60.7
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 1.8e-26 122.9 127 58.3
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 3.0e-26 122.1 96 74.0
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 3.0e-26 122.1 127 62.2
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 3.0e-26 122.1 129 59.7
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 4.0e-26 121.7 125 60.8
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 4.0e-26 121.7 124 57.3
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 4.0e-26 121.7 115 62.6
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 4.0e-26 121.7 125 61.6
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 4.0e-26 121.7 127 55.9
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 6.8e-26 120.9 126 57.1
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 8.9e-26 120.6 115 61.7
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 1.5e-25 119.8 124 60.5
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 2.0e-25 119.4 127 59.1
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 2.0e-25 119.4 127 60.6
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 2.6e-25 119.0 99 67.7
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 2.6e-25 119.0 129 57.4
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 3.4e-25 118.6 128 57.0
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 3.4e-25 118.6 125 60.0
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 5.8e-25 117.9 126 60.3
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 5.8e-25 117.9 125 60.0
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 7.5e-25 117.5 124 60.5
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 1.3e-24 116.7 125 59.2
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.7e-24 116.3 127 57.5
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 2.2e-24 115.9 127 55.1
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 2.9e-24 115.5 116 62.9
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 2.9e-24 115.5 124 60.5
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 3.7e-24 115.2 126 58.7
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 4.9e-24 114.8 131 58.8
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 6.4e-24 114.4 123 59.3
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 6.4e-24 114.4 128 55.5
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 8.3e-24 114.0 120 57.5
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.9e-23 112.8 130 56.2
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 2.4e-23 112.5 125 55.2
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 3.2e-23 112.1 126 54.0
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 4.1e-23 111.7 126 56.3
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 1.2e-22 110.2 103 62.1
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 1.6e-22 109.8 130 55.4
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 3.5e-22 108.6 127 55.9
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 4.6e-22 108.2 126 54.0
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 7.8e-22 107.5 127 57.5
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 1.3e-21 106.7 109 58.7
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 6.6e-21 104.4 132 56.1
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 6.6e-21 104.4 124 59.7
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 2.5e-20 102.4 129 53.5
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 4.3e-20 101.7 126 55.6
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 1.2e-19 100.1 129 51.2
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 1.6e-19 99.8 127 55.9
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 8.0e-19 97.4 127 51.2
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 1.1e-18 97.1 125 52.8
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 2.3e-18 95.9 124 52.4
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 2.2e-16 89.4 125 47.2
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 4.9e-16 88.2 124 44.4
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 6.4e-16 87.8 125 48.0
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 3.2e-15 85.5 112 48.2
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 5.4e-15 84.7 74 63.5
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 7.0e-15 84.3 92 48.9
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 1.2e-14 83.6 49 91.8
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 1.6e-14 83.2 122 41.8
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 5.1e-13 78.2 126 41.3
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 5.1e-13 78.2 106 51.9
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 6.6e-13 77.8 124 44.4
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 8.6e-13 77.4 68 66.2
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 3.6e-11 72.0 124 41.1
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 8.1e-11 70.9 72 59.7
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 1.8e-10 69.7 82 54.9
Psat3g122680 Pisum sativum HOM05D004388 ORTHO05D005106 1.7e-08 63.2 113 46.0
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 1.4e-07 60.1 111 47.7


User provided reference genes

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