Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 4.8e-153 544.7 316 100.0
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 6.1e-47 192.2 247 51.0
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 2.6e-37 160.2 233 50.6
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 1.7e-33 147.5 244 47.1
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 9.7e-29 131.7 237 42.6
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 8.2e-28 128.6 249 41.0
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 1.1e-24 118.2 234 43.2
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 1.9e-24 117.5 126 58.7
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 2.5e-24 117.1 247 40.5
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 2.5e-24 117.1 244 39.3
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 5.5e-24 115.9 248 39.1
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 9.4e-24 115.2 129 56.6
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 1.2e-23 114.8 243 40.7
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 2.1e-23 114.0 150 52.7
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 2.7e-23 113.6 126 55.6
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 3.6e-23 113.2 233 38.6
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 3.6e-23 113.2 248 41.1
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 6.1e-23 112.5 241 40.2
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 8.0e-23 112.1 136 53.7
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 8.0e-23 112.1 150 52.0
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 1.8e-22 110.9 246 38.2
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 4.0e-22 109.8 235 38.7
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 4.0e-22 109.8 130 52.3
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 4.0e-22 109.8 138 50.7
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 4.0e-22 109.8 238 39.1
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 4.0e-22 109.8 238 39.1
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 5.2e-22 109.4 237 38.8
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 6.8e-22 109.0 135 53.3
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 2.6e-21 107.1 256 35.5
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 3.4e-21 106.7 241 38.2
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 4.4e-21 106.3 141 50.4
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 4.4e-21 106.3 143 50.3
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 2.2e-20 104.0 154 46.8
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 2.2e-20 104.0 242 38.4
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 2.2e-20 104.0 148 50.7
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 2.8e-20 103.6 138 47.1
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 2.8e-20 103.6 123 53.7
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 4.8e-20 102.8 254 36.6
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 4.8e-20 102.8 253 35.2
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 4.8e-20 102.8 240 38.3
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 4.8e-20 102.8 250 37.6
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 6.3e-20 102.4 142 50.7
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 8.3e-20 102.1 259 36.3
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 8.3e-20 102.1 230 38.7
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 1.4e-19 101.3 154 50.0
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 1.4e-19 101.3 239 36.8
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 1.4e-19 101.3 151 51.7
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 1.4e-19 101.3 157 47.8
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 1.4e-19 101.3 153 48.4
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 1.4e-19 101.3 239 45.2
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 1.8e-19 100.9 129 47.3
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 1.8e-19 100.9 123 52.0
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 1.8e-19 100.9 191 41.9
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 1.8e-19 100.9 234 38.9
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 2.4e-19 100.5 252 35.3
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 4.1e-19 99.8 144 48.6
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 4.1e-19 99.8 230 38.3
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 5.4e-19 99.4 254 35.0
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 5.4e-19 99.4 143 49.7
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 5.4e-19 99.4 143 49.7
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 7.0e-19 99.0 248 36.7
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 9.1e-19 98.6 123 54.5
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 2.7e-18 97.1 253 35.2
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 4.5e-18 96.3 243 36.2
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 5.9e-18 95.9 137 46.0
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 5.9e-18 95.9 130 46.2
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 7.7e-18 95.5 231 37.7
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 1.7e-17 94.4 126 49.2
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 1.7e-17 94.4 253 38.3
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 2.2e-17 94.0 138 42.0
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.2e-17 94.0 123 52.8
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.2e-17 94.0 119 51.3
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 2.2e-17 94.0 123 52.8
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 2.2e-17 94.0 119 51.3
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.9e-17 93.6 119 51.3
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 3.8e-17 93.2 129 46.5
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 3.8e-17 93.2 219 36.5
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 5.0e-17 92.8 136 47.1
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 5.0e-17 92.8 138 48.6
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 5.0e-17 92.8 134 47.0
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 8.5e-17 92.0 241 35.7
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 8.5e-17 92.0 233 35.2
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 8.5e-17 92.0 137 43.1
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 8.5e-17 92.0 239 33.5
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.1e-16 91.7 142 43.7
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.1e-16 91.7 236 36.0
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 1.5e-16 91.3 133 44.4
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 1.5e-16 91.3 133 44.4
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 1.5e-16 91.3 133 44.4
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.5e-16 91.3 155 41.3
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 2.5e-16 90.5 130 49.2
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 2.5e-16 90.5 136 47.1
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 2.5e-16 90.5 121 50.4
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 3.2e-16 90.1 127 48.8
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 4.2e-16 89.7 136 44.9
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 5.5e-16 89.4 144 43.1
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 5.5e-16 89.4 134 50.0
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 7.2e-16 89.0 103 50.5
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 7.2e-16 89.0 144 45.1
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 7.2e-16 89.0 125 48.0
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 9.4e-16 88.6 119 53.8
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 1.2e-15 88.2 157 41.4
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 1.6e-15 87.8 136 44.1
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 1.6e-15 87.8 246 35.4
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 2.1e-15 87.4 123 48.0
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 2.1e-15 87.4 120 47.5
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 2.7e-15 87.0 136 44.1
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.7e-15 87.0 122 47.5
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 3.6e-15 86.7 122 47.5
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 6.1e-15 85.9 98 53.1
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 6.1e-15 85.9 122 45.9
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 8.0e-15 85.5 138 44.2
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 8.0e-15 85.5 132 44.7
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 8.0e-15 85.5 132 44.7
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 8.0e-15 85.5 130 46.2
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 1.0e-14 85.1 124 48.4
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 1.0e-14 85.1 229 39.7
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 1.8e-14 84.3 137 41.6
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 1.8e-14 84.3 139 42.4
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 1.8e-14 84.3 139 42.4
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 1.8e-14 84.3 139 42.4
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 1.8e-14 84.3 127 48.0
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 1.8e-14 84.3 127 48.8
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 2.3e-14 84.0 132 43.9
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 2.3e-14 84.0 132 43.9
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 2.3e-14 84.0 132 43.9
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 4.0e-14 83.2 132 40.9
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 6.8e-14 82.4 119 48.7
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 8.8e-14 82.0 154 44.2
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 1.2e-13 81.6 235 32.3
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 2.0e-13 80.9 92 53.3
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 2.6e-13 80.5 125 47.2
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 3.4e-13 80.1 130 44.6
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 4.4e-13 79.7 94 52.1
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 5.7e-13 79.3 133 41.4
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 5.7e-13 79.3 144 39.6
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 4.9e-12 76.3 128 40.6
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 1.4e-11 74.7 115 44.3
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 3.1e-11 73.6 82 53.7
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 4.1e-11 73.2 77 58.4
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 4.1e-11 73.2 112 45.5
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 5.4e-11 72.8 132 38.6
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 1.2e-10 71.6 119 45.4
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 1.6e-10 71.2 123 46.3
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 2.7e-10 70.5 113 48.7
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 4.5e-10 69.7 124 41.1
Os01g0278000 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 5.9e-10 69.3 82 45.1
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 1.3e-09 68.2 89 51.7
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 1.3e-09 68.2 121 43.0
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 1.7e-09 67.8 119 39.5
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 2.3e-09 67.4 84 46.4
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 2.9e-09 67.0 85 49.4
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 7.2e-08 62.4 85 42.4
SEGI_18240 Sequoiadendron giganteum HOM05D004369 ORTHO05D004907 9.5e-08 62.0 95 41.1
Os07g0686600 Oryza sativa ssp. japonica HOM05D015271 ORTHO05D020944 2.8e-07 60.5 123 35.0
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 4.7e-07 59.7 182 34.1
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 3.0e-06 57.0 103 41.7
Os12g0127800 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 6.8e-06 55.8 84 41.7
SMO201G0151 Selaginella moellendorffii HOM05D001711 ORTHO05D002211 6.8e-06 55.8 96 39.6


User provided reference genes

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