Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G2359 Erigeron canadensis HOM05D004179 ORTHO05D005248 3.9e-296 1020.8 538 100.0
Lsat_1_v5_gn_7_86320 Lactuca sativa HOM05D004179 ORTHO05D005248 3.1e-277 958.0 536 94.6
HanXRQChr16g0510101 Helianthus annuus HOM05D004179 ORTHO05D005248 2.7e-265 918.3 535 89.7
HanXRQChr04g0128091 Helianthus annuus HOM05D004179 ORTHO05D005248 2.6e-263 911.8 516 93.6
Hma1.2p1_0796F.1_g219140 Hydrangea macrophylla HOM05D004179 ORTHO05D005248 1.8e-248 862.4 537 83.6
PGR042G2277 Punica granatum HOM05D004179 ORTHO05D005248 5.2e-248 860.9 532 82.9
Lj5A213T83 Lonicera japonica HOM05D004179 ORTHO05D005248 4.4e-247 857.8 536 83.8
TWI79G0140 Tripterygium wilfordii HOM05D004179 ORTHO05D005248 4.8e-246 854.4 534 82.8
Lj5g0015320 Lotus japonicus HOM05D004179 ORTHO05D005248 1.1e-245 853.2 535 84.5
Prupe.8G134200 Prunus persica HOM05D004179 ORTHO05D005248 2.4e-245 852.0 535 82.4
arahy.Tifrunner.gnm1.ann1.T2YEM3 Arachis hypogaea HOM05D004179 ORTHO05D005248 3.1e-245 851.7 535 83.7
arahy.Tifrunner.gnm1.ann1.W9R5L5 Arachis hypogaea HOM05D004179 ORTHO05D005248 1.2e-244 849.7 535 83.7
Manes.07G069700 Manihot esculenta HOM05D004179 ORTHO05D005248 4.5e-244 847.8 535 82.8
Oeu037243.1 Olea europaea HOM05D004179 ORTHO05D005248 4.5e-244 847.8 553 81.2
Cfa004570 Carpinus fangiana HOM05D004179 ORTHO05D005248 1.3e-243 846.3 535 82.4
Psat6g219600 Pisum sativum HOM05D004179 ORTHO05D005248 5.0e-243 844.3 536 83.4
Ca_11083_v3 Cicer arietinum L. HOM05D004179 ORTHO05D005248 6.5e-243 844.0 536 83.2
Ciclev10028086m.g Citrus clementina HOM05D004179 ORTHO05D005248 6.5e-243 844.0 535 81.9
Potri.009G096700 Populus trichocarpa HOM05D004179 ORTHO05D005248 8.5e-243 843.6 541 82.8
Eucgr.G01360 Eucalyptus grandis HOM05D004179 ORTHO05D005248 5.5e-242 840.9 534 82.2
PGSC0003DMG400022932 Solanum tuberosum HOM05D004179 ORTHO05D005248 7.2e-242 840.5 533 82.7
Migut.B00382 Erythranthe guttata HOM05D004179 ORTHO05D005248 9.4e-242 840.1 534 83.1
BolC5t33281H Brassica oleracea HOM05D004179 ORTHO05D005248 1.6e-241 839.3 535 81.9
Haze_10162 Corylus avellana HOM05D004179 ORTHO05D005248 2.1e-241 839.0 551 80.9
BcaB06g26008 Brassica carinata HOM05D004179 ORTHO05D005248 2.7e-241 838.6 535 82.1
C05p45560 Brassica napus HOM05D004179 ORTHO05D005248 2.7e-241 838.6 535 81.9
Gohir.D02G207400 Gossypium hirsutum HOM05D004179 ORTHO05D005248 3.6e-241 838.2 535 81.7
FvH4_2g05320 Fragaria vesca HOM05D004179 ORTHO05D005248 4.7e-241 837.8 535 81.1
THA.LOC104812909 Tarenaya hassleriana HOM05D004179 ORTHO05D005248 4.7e-241 837.8 534 82.8
Gorai.005G235300 Gossypium raimondii HOM05D004179 ORTHO05D005248 1.0e-240 836.6 534 81.5
Solyc11g044540.2 Solanum lycopersicum HOM05D004179 ORTHO05D005248 1.0e-240 836.6 533 82.4
AL3G32890 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 1.4e-240 836.3 534 82.2
DCAR_001640 Daucus carota HOM05D004179 ORTHO05D005248 1.4e-240 836.3 532 83.1
FAN15G2578 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.8e-240 835.9 534 81.3
CiPaw.05G010800 Carya illinoinensis HOM05D004179 ORTHO05D005248 3.0e-240 835.1 536 81.7
Thhalv10020369m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 4.0e-240 834.7 534 81.1
Nn5g30409 Nelumbo nucifera HOM05D004179 ORTHO05D005248 4.0e-240 834.7 532 82.9
Sopen11g020160 Solanum pennellii HOM05D004179 ORTHO05D005248 6.8e-240 833.9 533 82.2
Potri.001G301000 Populus trichocarpa HOM05D004179 ORTHO05D005248 8.8e-240 833.6 534 82.6
RcHm_v2.0_Chr6g0255511 Rosa chinensis HOM05D004179 ORTHO05D005248 8.8e-240 833.6 535 80.7
COL.COLO4_32603 Corchorus olitorius HOM05D004179 ORTHO05D005248 1.2e-239 833.2 562 79.7
Peaxi162Scf00152g00232 Petunia axillaris HOM05D004179 ORTHO05D005248 1.2e-239 833.2 494 86.8
A05p30130 Brassica napus HOM05D004179 ORTHO05D005248 1.5e-239 832.8 535 81.7
BraA05t21853Z Brassica rapa HOM05D004179 ORTHO05D005248 1.5e-239 832.8 535 81.7
FAN20G2197 Fragaria x ananassa HOM05D004179 ORTHO05D005248 1.5e-239 832.8 534 80.7
Medtr1g107485 Medicago truncatula HOM05D004179 ORTHO05D005248 3.4e-239 831.6 536 81.5
TAR628G1050 Trochodendron aralioides HOM05D004179 ORTHO05D005248 4.4e-239 831.2 532 82.3
Gohir.A03G186600 Gossypium hirsutum HOM05D004179 ORTHO05D005248 7.5e-239 830.5 535 80.9
MSTRG.20181 Avicennia marina HOM05D004179 ORTHO05D005248 9.8e-239 830.1 533 82.4
Thecc.02G107000 Theobroma cacao HOM05D004179 ORTHO05D005248 9.8e-239 830.1 513 84.4
CANSAT25G3047 Cannabis sativa HOM05D004179 ORTHO05D005248 1.3e-238 829.7 535 80.4
SalBow6G5260 Salvia bowleyana HOM05D004179 ORTHO05D005248 1.3e-238 829.7 503 84.3
TPR.G13858 Trifolium pratense HOM05D004179 ORTHO05D005248 1.3e-238 829.7 536 82.1
AT3G19490 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 1.7e-238 829.3 534 81.8
CANSAT25G1226 Cannabis sativa HOM05D004179 ORTHO05D005248 1.7e-238 829.3 535 80.4
Lalb_Chr06g0165491 Lupinus albus HOM05D004179 ORTHO05D005248 1.7e-238 829.3 532 80.8
GSVIVG01003166001 Vitis vinifera HOM05D004179 ORTHO05D005248 1.7e-238 829.3 528 83.5
Carub.0003s1929 Capsella rubella HOM05D004179 ORTHO05D005248 3.7e-238 828.2 534 81.1
CARHR094910 Cardamine hirsuta HOM05D004179 ORTHO05D005248 4.8e-238 827.8 534 81.5
SGA_v2.0_scaffold225G43075 Striga asiatica HOM05D004179 ORTHO05D005248 1.8e-237 825.9 537 81.2
Oeu044290.1 Olea europaea HOM05D004179 ORTHO05D005248 2.4e-237 825.5 535 80.7
QL11p033970 Quercus lobata HOM05D004179 ORTHO05D005248 5.4e-237 824.3 526 82.3
TAR376G0033 Trochodendron aralioides HOM05D004179 ORTHO05D005248 1.2e-236 823.2 532 81.2
MSTRG.5346 Avicennia marina HOM05D004179 ORTHO05D005248 1.6e-236 822.8 528 81.2
AUR62010284 Chenopodium quinoa HOM05D004179 ORTHO05D005248 1.6e-236 822.8 530 80.4
CAN.G621.5 Capsicum annuum HOM05D004179 ORTHO05D005248 2.0e-236 822.4 529 81.7
Sabra09G0074300 Salix brachista HOM05D004179 ORTHO05D005248 1.3e-235 819.7 570 78.2
A03p41230 Brassica napus HOM05D004179 ORTHO05D005248 1.7e-235 819.3 534 79.6
Phvul.007G039000 Phaseolus vulgaris HOM05D004179 ORTHO05D005248 1.7e-235 819.3 534 80.9
AUR62039105 Chenopodium quinoa HOM05D004179 ORTHO05D005248 2.9e-235 818.5 532 79.5
BraA03t13276Z Brassica rapa HOM05D004179 ORTHO05D005248 1.9e-234 815.8 534 79.6
BolC3t17326H Brassica oleracea HOM05D004179 ORTHO05D005248 2.5e-234 815.5 534 80.0
PSO541G5343 Papaver somniferum HOM05D004179 ORTHO05D005248 2.5e-234 815.5 533 80.7
Rhsim05G0087800 Rhododendron simsii HOM05D004179 ORTHO05D005248 2.5e-234 815.5 564 77.3
Sp3g17540 Schrenkiella parvula HOM05D004179 ORTHO05D005248 2.5e-234 815.5 534 79.2
unitig_37.g12803 Utricularia gibba HOM05D004179 ORTHO05D005248 2.5e-234 815.5 535 79.4
VMungo0720G2067 Vigna mungo HOM05D004179 ORTHO05D005248 3.3e-234 815.1 532 80.3
Atru.chr5.2582 Acer truncatum HOM05D004179 ORTHO05D005248 2.1e-233 812.4 534 79.8
C03p50340 Brassica napus HOM05D004179 ORTHO05D005248 6.1e-233 810.8 534 78.8
Aa31LG8G6240 Aethionema arabicum HOM05D004179 ORTHO05D005248 1.4e-232 809.7 545 78.5
PSO675G3501 Papaver somniferum HOM05D004179 ORTHO05D005248 1.4e-232 809.7 533 79.5
Cpa.g.sc106.85 Carica papaya HOM05D004179 ORTHO05D005248 1.8e-232 809.3 495 84.8
BcaC01g03629 Brassica carinata HOM05D004179 ORTHO05D005248 2.3e-232 808.9 534 78.7
BcaB04g19041 Brassica carinata HOM05D004179 ORTHO05D005248 3.0e-232 808.5 534 78.8
ClCG05G010240 Citrullus lanatus HOM05D004179 ORTHO05D005248 4.0e-232 808.1 540 78.0
Hund06333 Selenicereus undatus HOM05D004179 ORTHO05D005248 8.9e-232 807.0 531 80.0
Aqoxy6G02887 Aquilegia oxysepala HOM05D004179 ORTHO05D005248 2.0e-231 805.8 532 79.3
Sed0014414 Sechium edule HOM05D004179 ORTHO05D005248 2.6e-231 805.4 539 78.1
EL10Ac9g22290 Beta vulgaris HOM05D004179 ORTHO05D005248 2.2e-230 802.4 557 76.1
Actinidia17883 Actinidia chinensis HOM05D004179 ORTHO05D005248 6.3e-230 800.8 500 83.8
ATR0691G115 Amborella trichopoda HOM05D004179 ORTHO05D005248 1.0e-227 793.5 509 80.2
Sc17g0003000 Simmondsia chinensis HOM05D004179 ORTHO05D005248 5.0e-227 791.2 496 84.5
Cc02_g19190 Coffea canephora HOM05D004179 ORTHO05D005248 6.6e-227 790.8 537 79.3
Ah.01g018160 Amaranthus hybridus HOM05D004179 ORTHO05D005248 4.7e-225 784.6 533 76.7
vmacro19521 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 1.5e-223 779.6 528 78.2
FAN24G2682 Fragaria x ananassa HOM05D004179 ORTHO05D005248 9.8e-223 776.9 569 74.0
RcHm_v2.0_Chr6g0255521 Rosa chinensis HOM05D004179 ORTHO05D005248 4.1e-221 771.5 507 79.7
RcHm_v2.0_Chr6g0255491 Rosa chinensis HOM05D004179 ORTHO05D005248 1.2e-217 760.0 466 83.7
SEGI_32792 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 5.8e-215 751.1 489 78.3
HPP92_004767 Vanilla planifolia HOM05D004179 ORTHO05D005248 1.3e-214 750.0 536 74.3
Duzib052G0638 Durio zibethinus HOM05D004179 ORTHO05D005248 2.4e-213 745.7 488 79.9
Dinv15758 Davidia involucrata HOM05D004179 ORTHO05D005248 6.2e-209 731.1 435 87.6
Duzib132G1089 Durio zibethinus HOM05D004179 ORTHO05D005248 8.9e-208 727.2 495 77.0
Zm00001eb307330 Zea mays HOM05D004179 ORTHO05D005248 1.7e-206 723.0 464 78.4
Mapoly0030s0013 Marchantia polymorpha HOM05D004179 ORTHO05D005248 6.4e-206 721.1 538 71.0
QL11p034034 Quercus lobata HOM05D004179 ORTHO05D005248 4.6e-204 714.9 437 84.0
QL11p034002 Quercus lobata HOM05D004179 ORTHO05D005248 1.1e-200 703.7 437 82.4
Duzib052G0741 Durio zibethinus HOM05D004179 ORTHO05D005248 4.0e-200 701.8 531 71.6
AagrBONN_evm.TU.Sc2ySwM_117.488 Anthoceros agrestis HOM05D004179 ORTHO05D005248 4.4e-199 698.4 494 73.1
Rhsim05G0087900 Rhododendron simsii HOM05D004179 ORTHO05D005248 1.1e-197 693.7 435 82.8
Pp3c4_21490 Physcomitrium patens HOM05D004179 ORTHO05D005248 4.6e-196 688.3 502 70.3
MELO3C019541.2 Cucumis melo HOM05D004179 ORTHO05D005248 1.7e-195 686.4 697 57.8
Hund00144 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.5e-194 682.6 534 68.4
Pp3c12_4070 Physcomitrium patens HOM05D004179 ORTHO05D005248 3.6e-193 678.7 532 67.1
Nitab4.5_0001596g0010 Nicotiana tabacum HOM05D004179 ORTHO05D005248 2.3e-187 659.4 396 86.9
Glyma.20G129500 Glycine max HOM05D004179 ORTHO05D005248 9.0e-184 647.5 440 77.0
Os09g0109800 Oryza sativa ssp. japonica HOM05D004179 ORTHO05D005248 4.6e-180 635.2 409 79.7
SMO347G0195 Selaginella moellendorffii HOM05D004179 ORTHO05D005248 1.0e-179 634.0 424 76.7
Duzib132G1182 Durio zibethinus HOM05D004179 ORTHO05D005248 8.7e-179 630.9 397 81.1
VMungo0720G0258 Vigna mungo HOM05D004179 ORTHO05D005248 3.3e-178 629.0 417 77.7
Ciclev10030164m.g Citrus clementina HOM05D004179 ORTHO05D005248 1.8e-176 623.2 389 82.3
CSS0041442 Camellia sinensis var. sinensis HOM05D004179 ORTHO05D005248 2.4e-176 622.9 407 80.6
Thhalv10012248m.g Eutrema salsugineum HOM05D004179 ORTHO05D005248 1.5e-175 620.2 434 74.9
AT1G49810 Arabidopsis thaliana HOM05D004179 ORTHO05D005248 2.2e-174 616.3 418 75.8
AL1G57290 Arabidopsis lyrata HOM05D004179 ORTHO05D005248 1.8e-171 606.7 423 73.3
BcaC05g28472 Brassica carinata HOM05D004179 ORTHO05D005248 1.6e-164 583.6 535 62.4
MD05G1088200 Malus domestica HOM05D004179 ORTHO05D005248 8.7e-163 577.8 464 68.8
CDE04G0108 Ceratophyllum demersum HOM05D004179 ORTHO05D005248 2.2e-150 536.6 538 58.6
BcaB06g26006 Brassica carinata HOM05D004179 ORTHO05D005248 4.7e-148 528.9 316 85.8
vmacro23441 Vaccinium macrocarpon HOM05D004179 ORTHO05D005248 6.5e-142 508.4 442 65.4
Eucgr.H03221 Eucalyptus grandis HOM05D004179 ORTHO05D005248 6.1e-140 501.9 395 69.6
CsaV3_3G018250 Cucumis sativus L. HOM05D004179 ORTHO05D005248 1.8e-139 500.4 343 76.4
Carub.0001s3900 Capsella rubella HOM05D004179 ORTHO05D005248 7.2e-133 478.4 352 69.9
CiPaw.06G169900 Carya illinoinensis HOM05D004179 ORTHO05D005248 9.4e-133 478.0 299 82.3
Dinv42185 Davidia involucrata HOM05D004179 ORTHO05D005248 1.3e-129 467.6 297 84.8
Cre09.g395288 Chlamydomonas reinhardtii HOM05D004179 ORTHO05D005248 1.7e-118 430.6 544 45.4
RcHm_v2.0_Chr6g0255461 Rosa chinensis HOM05D004179 ORTHO05D005248 2.3e-118 430.3 285 78.6
MBI16_g34668_MAGBIO Magnolia biondii HOM05D004179 ORTHO05D005248 2.9e-118 429.9 276 80.1
Nitab4.5_0001539g0020 Nicotiana tabacum HOM05D004179 ORTHO05D005248 3.8e-118 429.5 259 85.3
Actinidia27968 Actinidia chinensis HOM05D004179 ORTHO05D005248 1.6e-84 317.8 505 43.8
SEGI_35862 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 9.3e-80 302.0 213 71.8
Sabra16G0189200 Salix brachista HOM05D004179 ORTHO05D005248 6.9e-75 285.8 522 41.0
Glyma.20G127600 Glycine max HOM05D004179 ORTHO05D005248 5.8e-74 282.7 199 78.4
Glyma.10G261350 Glycine max HOM05D004179 ORTHO05D005248 2.9e-73 280.4 186 75.8
CBR_g29563 Chara braunii HOM05D004179 ORTHO05D005248 2.8e-68 263.8 262 56.5
HanXRQChr02g0055551 Helianthus annuus HOM05D004179 ORTHO05D005248 1.5e-61 241.5 144 86.8
SEGI_39751 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 8.7e-54 215.7 169 66.9
CBR_g39138 Chara braunii HOM05D004179 ORTHO05D005248 1.9e-53 214.5 194 60.3
RcHm_v2.0_Chr6g0255471 Rosa chinensis HOM05D004179 ORTHO05D005248 3.8e-49 200.3 119 85.7
TPR.G27121 Trifolium pratense HOM05D004179 ORTHO05D005248 2.4e-43 181.0 127 73.2
Hund13342 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.8e-36 157.5 120 71.7
Hund09393 Selenicereus undatus HOM05D004179 ORTHO05D005248 2.2e-33 147.9 145 60.7
arahy.Tifrunner.gnm1.ann1.38ITRC Arachis hypogaea HOM05D000846 ORTHO05D021490 1.1e-32 145.6 109 76.1
BcaB01g01792 Brassica carinata HOM05D002587 ORTHO05D002778 1.4e-30 138.7 101 77.2
SEGI_40595 Sequoiadendron giganteum HOM05D004179 ORTHO05D005248 6.7e-30 136.3 94 68.1
HanXRQChr02g0055561 Helianthus annuus HOM05D004179 ORTHO05D021490 4.8e-28 130.2 78 88.5
Manes.04G059624 Manihot esculenta HOM05D004179 ORTHO05D021490 7.0e-27 126.3 69 91.3
PSO832G1539 Papaver somniferum HOM05D000003 ORTHO05D000004 2.0e-26 124.8 97 70.1
TPR.G23074 Trifolium pratense HOM05D001509 ORTHO05D001361 2.2e-25 121.3 79 77.2
arahy.Tifrunner.gnm1.ann1.38IWEY Arachis hypogaea HOM05D004179 ORTHO05D005248 2.0e-21 108.2 61 86.9
CBR_g29562 Chara braunii HOM05D004179 ORTHO05D005248 2.6e-21 107.8 88 60.2
MD05G1088300 Malus domestica HOM05D004179 ORTHO05D005248 1.7e-17 95.1 70 72.9
arahy.Tifrunner.gnm1.ann1.JR6IQW Arachis hypogaea HOM05D004179 ORTHO05D021490 4.2e-16 90.5 53 88.7
HanXRQChr04g0106691 Helianthus annuus HOM05D004179 ORTHO05D020814 2.3e-14 84.7 51 82.4
CARHR039870 Cardamine hirsuta HOM05D004179 ORTHO05D021490 5.7e-13 80.1 58 70.7
BcaC02g11330 Brassica carinata HOM05D004179 ORTHO05D092784 2.2e-12 78.2 141 36.9
VMungo1215G0907 Vigna mungo HOM05D004179 ORTHO05D020814 4.5e-10 70.5 61 62.3
VMungo0720G0416 Vigna mungo HOM05D004179 ORTHO05D020814 7.7e-10 69.7 46 71.7
SMO199G0121 Selaginella moellendorffii HOM05D004179 ORTHO05D374621 8.5e-09 66.2 93 48.4
Hund25982 Selenicereus undatus HOM05D004179 ORTHO05D021490 2.5e-08 64.7 39 87.2


User provided reference genes

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