Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 2.0e-164 582.4 302 100.0
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 3.0e-128 462.2 303 80.9
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 3.9e-128 461.8 298 81.5
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 2.6e-124 449.1 297 80.8
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 2.2e-110 402.9 308 68.8
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 6.3e-110 401.4 288 72.2
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 5.3e-109 398.3 301 68.1
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 2.6e-108 396.0 302 67.9
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 3.5e-108 395.6 256 75.4
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 7.7e-108 394.4 308 69.2
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 1.1e-106 390.6 264 73.9
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 1.9e-106 389.8 298 68.8
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 2.5e-106 389.4 306 67.6
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 2.5e-106 389.4 264 73.9
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 3.2e-106 389.0 302 67.5
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 7.2e-106 387.9 303 66.3
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 7.2e-106 387.9 303 67.0
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 1.2e-105 387.1 282 69.1
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 2.1e-105 386.3 301 68.1
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 2.7e-105 386.0 306 66.3
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 4.7e-105 385.2 290 67.2
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 1.0e-104 384.0 302 65.9
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 4.0e-104 382.1 256 75.4
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 6.7e-104 381.3 302 65.9
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 8.8e-104 380.9 252 73.8
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 4.4e-103 378.6 301 66.1
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 9.7e-103 377.5 256 75.8
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 1.3e-102 377.1 302 65.6
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 2.2e-102 376.3 300 66.0
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 2.2e-102 376.3 256 73.4
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 2.8e-102 375.9 270 72.6
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 6.3e-102 374.8 302 66.6
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 4.1e-101 372.1 302 64.6
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 5.3e-101 371.7 304 63.2
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 7.0e-101 371.3 255 73.7
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 7.0e-101 371.3 304 65.1
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 2.6e-100 369.4 303 64.7
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 2.6e-100 369.4 303 64.7
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 4.5e-100 368.6 303 65.3
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.0e-99 367.5 317 63.4
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.0e-99 367.5 317 63.4
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 1.0e-99 367.5 303 65.3
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 1.3e-99 367.1 300 65.0
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 1.7e-99 366.7 313 62.9
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 2.2e-99 366.3 312 63.1
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 2.2e-99 366.3 330 61.5
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 5.0e-99 365.2 299 65.6
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 8.5e-99 364.4 308 64.0
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 1.1e-98 364.0 287 63.8
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 1.5e-98 363.6 303 64.4
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 1.9e-98 363.2 255 71.8
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 2.5e-98 362.8 297 64.3
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 5.5e-98 361.7 311 62.4
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 7.2e-98 361.3 302 62.9
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 1.6e-97 360.1 252 71.4
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 2.7e-97 359.4 262 67.2
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 2.7e-97 359.4 244 73.0
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 3.6e-97 359.0 255 71.4
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 1.0e-96 357.5 255 69.4
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 1.0e-96 357.5 264 67.8
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 3.0e-96 355.9 264 67.4
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 3.0e-96 355.9 294 65.3
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 4.0e-96 355.5 290 64.1
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 5.2e-96 355.1 252 70.6
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 8.8e-96 354.4 300 62.3
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 2.0e-95 353.2 310 61.0
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 2.0e-95 353.2 254 66.9
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 7.5e-95 351.3 254 68.1
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 9.8e-95 350.9 262 64.9
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.3e-94 350.5 303 59.7
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 1.3e-94 350.5 264 65.9
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 1.3e-94 350.5 260 66.5
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 2.2e-94 349.7 315 59.7
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 2.8e-94 349.4 258 67.8
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 3.7e-94 349.0 300 59.7
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 4.8e-94 348.6 289 61.9
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 6.3e-94 348.2 256 66.8
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 6.3e-94 348.2 290 63.4
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 8.3e-94 347.8 288 60.1
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.1e-93 347.4 251 67.3
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 1.1e-93 347.4 297 60.3
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 1.1e-93 347.4 306 60.5
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 3.1e-93 345.9 293 60.8
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 3.1e-93 345.9 293 60.8
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 3.1e-93 345.9 291 61.2
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 3.1e-93 345.9 291 62.9
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 4.1e-93 345.5 290 60.7
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 4.1e-93 345.5 302 59.3
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 5.4e-93 345.1 260 63.5
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 7.0e-93 344.7 277 61.4
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 9.1e-93 344.4 289 61.2
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 1.6e-92 343.6 300 61.0
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 2.0e-92 343.2 305 61.0
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 1.3e-91 340.5 268 64.2
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 3.8e-91 339.0 283 60.1
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 5.0e-91 338.6 291 59.1
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 5.0e-91 338.6 291 59.1
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 5.0e-91 338.6 236 70.8
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 6.5e-91 338.2 283 60.1
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 6.5e-91 338.2 292 61.0
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 8.5e-91 337.8 236 70.3
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.9e-90 336.7 303 59.4
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 4.2e-90 335.5 291 58.8
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 5.5e-90 335.1 358 51.7
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 1.6e-89 333.6 303 59.1
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 1.0e-88 330.9 285 59.3
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 1.0e-88 330.9 303 58.4
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 1.8e-88 330.1 258 67.1
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 4.0e-88 328.9 273 62.6
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 1.2e-87 327.4 217 75.1
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.5e-87 327.0 276 65.2
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 1.5e-87 327.0 236 66.9
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.7e-87 325.1 259 64.5
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 2.2e-86 323.2 246 65.9
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 2.8e-86 322.8 268 63.1
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 4.9e-86 322.0 300 56.7
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 4.1e-85 318.9 252 66.7
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 1.3e-83 313.9 374 48.7
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 1.5e-82 310.5 240 63.8
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 3.3e-82 309.3 333 54.4
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 1.2e-81 307.4 300 55.7
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.6e-81 307.0 335 54.0
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 1.6e-81 307.0 239 64.0
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 8.0e-81 304.7 260 56.2
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.8e-80 303.5 309 56.0
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 1.2e-79 300.8 306 56.2
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 6.4e-78 295.0 246 59.3
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 4.3e-74 282.3 261 61.7
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 5.8e-71 271.9 292 49.7
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 1.3e-70 270.8 226 61.1
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 2.7e-68 263.1 288 47.2
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 5.6e-66 255.4 259 47.9
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 2.2e-62 243.4 221 55.7
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 2.9e-62 243.0 253 49.4
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 6.4e-62 241.9 226 58.0
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 1.1e-58 231.1 163 68.1
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.9e-58 230.3 410 36.8
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 1.6e-57 227.3 237 48.5
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 1.5e-55 220.7 234 47.9
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 3.4e-55 219.5 186 64.0
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 2.1e-52 210.3 240 44.2
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 2.5e-50 203.4 294 43.2
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 3.3e-50 203.0 136 73.5
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 1.2e-47 194.5 141 70.9
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 1.3e-46 191.0 143 67.1
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 4.2e-45 186.0 172 51.2
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 4.9e-30 136.0 144 50.7
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 3.4e-23 113.2 73 75.3
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 7.6e-23 112.1 107 50.5
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 2.2e-22 110.5 69 81.2
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 9.6e-18 95.1 79 58.2
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.3e-14 84.7 184 37.0
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 1.3e-14 84.7 72 56.9
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 2.3e-11 73.9 71 43.7
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 2.5e-10 70.5 52 65.4
Hund21439 Selenicereus undatus HOM05D002234 ORTHO05D002254 5.7e-10 69.3 198 28.3
CANSAT21G1663 Cannabis sativa HOM05D002234 ORTHO05D002254 1.1e-08 65.1 204 27.9
DCAR_027858 Daucus carota HOM05D002234 ORTHO05D002254 1.4e-08 64.7 292 26.7
Lj2P366T41 Lonicera japonica HOM05D004474 ORTHO05D005538 1.8e-08 64.3 80 57.5
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 3.1e-08 63.5 52 69.2
ATR0624G044 Amborella trichopoda HOM05D002234 ORTHO05D002254 5.3e-08 62.8 201 26.4
HPP92_003058 Vanilla planifolia HOM05D002234 ORTHO05D002254 5.3e-08 62.8 282 25.5
CiPaw.09G099600 Carya illinoinensis HOM05D002234 ORTHO05D002254 9.0e-08 62.0 202 27.2
TWI81G0224 Tripterygium wilfordii HOM05D002234 ORTHO05D002254 1.5e-07 61.2 210 27.6
unitig_744.g24517 Utricularia gibba HOM05D002234 ORTHO05D002254 1.5e-07 61.2 243 26.7
Zm00001eb024700 Zea mays HOM05D002234 ORTHO05D002254 3.4e-07 60.1 207 26.1
Lsat_1_v5_gn_3_19641 Lactuca sativa HOM05D002234 ORTHO05D001491 4.5e-07 59.7 164 26.8
SMO367G0795 Selaginella moellendorffii HOM05D002234 ORTHO05D002254 5.9e-07 59.3 242 25.6
ECA246G1777 Erigeron canadensis HOM05D002234 ORTHO05D002254 1.0e-06 58.5 206 24.3
EL10Ac5g12026 Beta vulgaris HOM05D002234 ORTHO05D002254 3.8e-06 56.6 210 25.7
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 3.8e-06 56.6 103 35.0


User provided reference genes

Program Settings