Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 2.0e-109 399.1 196 100.0
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 1.5e-83 313.2 190 79.5
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 1.0e-76 290.4 188 75.0
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 1.1e-75 287.0 192 71.9
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 2.5e-75 285.8 192 71.9
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 9.5e-75 283.9 185 74.1
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 1.6e-74 283.1 190 72.1
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 6.2e-74 281.2 189 72.0
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.4e-73 280.0 190 70.0
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 2.3e-73 279.3 190 70.5
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 2.3e-73 279.3 196 69.4
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 3.1e-73 278.9 192 70.8
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 4.0e-73 278.5 192 69.8
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 6.8e-73 277.7 193 71.0
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 8.9e-73 277.3 192 70.3
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 2.6e-72 275.8 192 71.4
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 5.8e-72 274.6 191 69.1
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 2.2e-71 272.7 192 69.3
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 2.9e-71 272.3 191 68.1
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 4.9e-71 271.6 190 68.4
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 4.9e-71 271.6 191 67.5
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 1.4e-70 270.0 191 68.1
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 1.4e-70 270.0 189 67.7
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 2.4e-70 269.2 193 71.0
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 3.2e-70 268.9 188 68.6
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 3.2e-70 268.9 189 70.4
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 5.4e-70 268.1 189 67.2
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 5.4e-70 268.1 189 65.6
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 5.4e-70 268.1 195 66.2
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 7.0e-70 267.7 189 69.8
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 1.2e-69 266.9 191 68.1
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 1.2e-69 266.9 187 67.9
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 1.6e-69 266.5 191 67.5
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 2.7e-69 265.8 181 70.7
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 1.3e-68 263.5 191 67.0
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 1.7e-68 263.1 192 66.7
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 2.3e-68 262.7 193 67.4
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 3.0e-68 262.3 193 67.4
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 3.0e-68 262.3 193 67.4
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 3.0e-68 262.3 195 66.7
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 3.9e-68 261.9 179 72.1
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 5.0e-68 261.5 194 66.5
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 6.6e-68 261.2 193 66.3
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 6.6e-68 261.2 165 75.8
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 6.6e-68 261.2 186 68.3
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 8.6e-68 260.8 193 64.8
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 1.1e-67 260.4 193 66.8
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 1.5e-67 260.0 203 64.0
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 1.9e-67 259.6 192 66.1
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 1.9e-67 259.6 195 67.7
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 2.5e-67 259.2 165 75.2
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 3.3e-67 258.8 193 66.3
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 3.3e-67 258.8 175 72.6
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 5.6e-67 258.1 195 66.2
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 1.6e-66 256.5 198 66.7
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 2.8e-66 255.8 202 64.9
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 3.6e-66 255.4 185 68.1
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 1.1e-65 253.8 187 65.8
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 1.4e-65 253.4 194 64.4
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 5.2e-65 251.5 190 63.7
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 6.8e-65 251.1 194 64.4
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 1.5e-64 250.0 188 67.6
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 2.0e-64 249.6 194 64.4
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 2.0e-64 249.6 194 64.4
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 2.0e-64 249.6 198 64.1
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 5.8e-64 248.1 194 62.4
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 7.5e-64 247.7 191 64.9
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 7.5e-64 247.7 185 64.9
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 9.9e-64 247.3 192 63.5
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 1.3e-63 246.9 193 64.2
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 1.3e-63 246.9 194 61.9
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 1.3e-63 246.9 194 63.9
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 1.7e-63 246.5 194 63.9
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 1.7e-63 246.5 194 63.9
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 2.9e-63 245.7 190 61.6
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 8.3e-63 244.2 190 62.6
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 1.1e-62 243.8 193 62.7
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 5.4e-62 241.5 190 62.1
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 7.1e-62 241.1 194 61.9
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 1.6e-61 240.0 191 63.4
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 2.7e-61 239.2 194 61.9
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 1.0e-60 237.3 191 63.9
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 4.7e-58 228.4 189 58.7
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 4.0e-57 225.3 185 58.9
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 6.8e-57 224.6 175 64.0
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 9.9e-56 220.7 168 65.5
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 1.7e-55 219.9 178 56.7
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 4.9e-55 218.4 191 57.6
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 1.9e-54 216.5 149 68.5
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 5.4e-54 214.9 187 57.2
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 9.2e-54 214.2 186 55.4
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 1.1e-49 200.7 194 56.7
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 6.4e-47 191.4 160 60.0
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 1.2e-45 187.2 197 49.2
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 2.1e-45 186.4 191 51.8
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 8.1e-34 147.9 111 61.3
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 1.7e-31 140.2 90 74.4
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 1.4e-30 137.1 102 61.8
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 1.5e-27 127.1 81 75.3
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 1.9e-27 126.7 82 75.6
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 1.6e-26 123.6 78 76.9
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 3.5e-21 105.9 96 56.2
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 3.5e-21 105.9 89 59.6
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 5.7e-19 98.6 158 41.1
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 1.3e-18 97.4 79 59.5
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 1.3e-18 97.4 79 59.5
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 1.2e-16 90.9 75 58.7
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.2e-10 70.1 172 29.1
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 2.2e-10 70.1 179 30.2
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 3.7e-10 69.3 167 28.1
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 1.8e-09 67.0 172 29.1
Cfa021425 Carpinus fangiana HOM05D006499 ORTHO05D007874 2.4e-09 66.6 183 27.9
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 3.1e-09 66.2 178 28.7
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 3.1e-09 66.2 49 55.1
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 9.1e-09 64.7 194 26.8
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 1.2e-08 64.3 176 28.4
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 2.0e-08 63.5 173 29.5
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 2.0e-08 63.5 175 25.1
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 2.0e-08 63.5 206 23.8
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 2.6e-08 63.2 176 25.6
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 3.4e-08 62.8 179 28.5
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 4.5e-08 62.4 180 28.3
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 4.5e-08 62.4 167 26.3
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 4.5e-08 62.4 177 26.0
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 5.9e-08 62.0 172 28.5
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 7.7e-08 61.6 177 28.2
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 7.7e-08 61.6 177 26.6
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 1.0e-07 61.2 186 25.3
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 1.3e-07 60.8 175 28.0
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 1.3e-07 60.8 175 28.0
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.3e-07 60.8 164 29.3
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 2.2e-07 60.1 179 27.4
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 2.9e-07 59.7 179 29.1
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 2.9e-07 59.7 151 27.2
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 2.9e-07 59.7 170 25.3
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 2.9e-07 59.7 172 26.7
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 3.8e-07 59.3 167 23.4
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 5.0e-07 58.9 171 28.1
MCO09G247 Micromonas commoda HOM05D006499 ORTHO05D007874 5.0e-07 58.9 88 34.1
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 5.0e-07 58.9 177 28.2
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 5.0e-07 58.9 172 28.5
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 6.5e-07 58.5 176 27.8
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 6.5e-07 58.5 192 27.1
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 1.1e-06 57.8 197 26.4
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 1.1e-06 57.8 170 27.6
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 1.4e-06 57.4 179 27.9
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.4e-06 57.4 172 25.6
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 1.4e-06 57.4 179 27.9
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 1.9e-06 57.0 187 25.1
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 1.9e-06 57.0 177 22.6
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 2.5e-06 56.6 175 26.3
PRCOL_00004885 Prasinoderma coloniale HOM05D003579 ORTHO05D004266 2.5e-06 56.6 71 43.7
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 3.2e-06 56.2 174 27.6
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 3.2e-06 56.2 171 28.1
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 3.2e-06 56.2 173 27.7
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 5.5e-06 55.5 181 27.6
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 7.2e-06 55.1 147 26.5
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 7.2e-06 55.1 172 27.9
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 7.2e-06 55.1 172 27.9
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 9.4e-06 54.7 172 24.4
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 9.4e-06 54.7 172 24.4
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 9.4e-06 54.7 181 25.4
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 9.4e-06 54.7 181 25.4
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 9.4e-06 54.7 163 27.6


User provided reference genes

Program Settings