Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 7.1e-273 943.3 484 100.0
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 4.8e-152 542.0 421 66.7
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 1.2e-139 500.7 390 66.4
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 1.3e-96 357.8 434 49.3
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 3.8e-93 346.3 426 50.5
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 3.8e-93 346.3 426 50.5
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.5e-92 344.4 438 47.5
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 7.0e-87 325.5 425 44.2
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 1.6e-86 324.3 416 45.2
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 7.8e-86 322.0 366 52.7
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.7e-85 320.9 424 44.6
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.3e-85 320.5 444 44.4
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.1e-84 318.2 418 46.2
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 1.1e-84 318.2 424 43.9
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 7.3e-84 315.5 436 42.7
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.2e-83 314.7 415 43.6
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 7.0e-79 298.9 413 43.6
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 5.1e-77 292.7 416 45.0
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 1.9e-76 290.8 417 41.2
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 6.2e-75 285.8 432 41.2
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.1e-71 275.0 413 41.9
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 3.2e-71 273.5 411 41.4
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 4.1e-71 273.1 419 39.4
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 4.1e-71 273.1 429 40.1
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 5.4e-71 272.7 413 40.2
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 9.2e-71 271.9 313 47.3
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 1.2e-70 271.6 409 42.5
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 3.5e-70 270.0 428 40.7
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 6.6e-69 265.8 424 38.2
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 6.6e-69 265.8 428 39.3
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.1e-68 265.0 423 38.3
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 1.1e-68 265.0 421 38.7
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 1.5e-68 264.6 411 40.6
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 1.2e-67 261.5 427 38.2
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.6e-67 261.2 418 40.7
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 2.8e-67 260.4 425 38.4
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 1.4e-66 258.1 412 40.5
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 3.1e-66 256.9 423 38.3
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 2.6e-65 253.8 373 43.4
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 4.4e-65 253.1 424 38.4
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 9.9e-65 251.9 377 40.3
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.9e-64 250.4 372 40.1
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 3.2e-63 246.9 394 42.9
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.6e-62 244.6 393 38.7
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 2.7e-62 243.8 330 42.7
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 4.6e-62 243.0 376 39.1
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 4.6e-62 243.0 419 36.8
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 4.6e-62 243.0 409 36.7
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 1.0e-61 241.9 354 39.8
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.3e-61 241.5 356 41.0
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 5.1e-61 239.6 421 37.3
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 8.7e-61 238.8 411 38.0
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.3e-60 236.9 416 38.2
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 2.1e-59 234.2 418 37.3
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 4.7e-59 233.0 421 35.9
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 9.0e-58 228.8 402 36.6
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 3.4e-57 226.9 432 34.5
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 5.8e-57 226.1 427 33.5
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 5.8e-57 226.1 283 46.3
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 2.9e-56 223.8 433 37.2
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 4.2e-55 219.9 405 37.8
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 5.4e-55 219.5 409 36.7
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 5.4e-55 219.5 386 37.3
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 7.8e-54 215.7 420 35.0
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 3.9e-53 213.4 411 36.7
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 2.5e-52 210.7 418 38.0
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.6e-51 208.0 408 35.8
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.8e-51 207.2 408 36.0
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 4.8e-51 206.5 383 34.7
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.1e-50 203.8 395 36.2
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 3.1e-50 203.8 369 33.6
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.2e-49 201.8 407 34.6
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.2e-49 201.8 386 35.5
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 7.6e-49 199.1 356 37.1
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 4.9e-48 196.4 414 35.3
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 6.4e-48 196.1 257 47.9
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 8.4e-48 195.7 270 43.3
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.2e-46 191.8 405 34.8
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 1.6e-46 191.4 398 34.2
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 2.1e-46 191.0 404 32.9
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 2.7e-46 190.7 382 34.3
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 3.5e-46 190.3 399 34.8
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 7.9e-46 189.1 385 34.5
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 1.0e-45 188.7 410 35.6
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 5.1e-45 186.4 384 34.6
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 1.5e-44 184.9 417 32.6
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 4.3e-44 183.3 404 30.9
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 1.3e-43 181.8 398 31.9
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 1.3e-43 181.8 405 32.6
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 2.8e-43 180.6 400 33.8
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 3.7e-43 180.3 420 33.1
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 4.0e-42 176.8 408 32.4
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 6.9e-42 176.0 411 34.1
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 2.0e-41 174.5 378 32.5
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 3.4e-41 173.7 264 39.8
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 3.4e-41 173.7 253 41.5
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 5.8e-41 172.9 436 33.9
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 9.9e-41 172.2 262 40.8
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 9.9e-41 172.2 418 31.3
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 1.3e-40 171.8 372 31.7
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.7e-40 171.4 266 40.2
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 1.2e-38 165.2 299 34.8
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 2.7e-38 164.1 377 30.2
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 2.7e-38 164.1 388 30.7
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 7.9e-38 162.5 396 30.8
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 2.3e-37 161.0 378 30.7
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 2.3e-37 161.0 390 30.0
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 3.0e-37 160.6 382 34.8
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 3.0e-37 160.6 379 30.9
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 5.1e-37 159.8 374 30.2
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 1.5e-36 158.3 371 32.3
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 3.3e-36 157.1 421 30.2
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 7.4e-36 156.0 379 32.5
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 9.6e-36 155.6 393 31.0
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 1.3e-35 155.2 368 31.5
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 2.1e-35 154.5 269 37.5
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 6.2e-35 152.9 380 31.6
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 6.2e-35 152.9 380 31.6
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 6.2e-35 152.9 444 31.8
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 8.2e-35 152.5 430 28.6
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 4.0e-34 150.2 152 48.7
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 3.4e-33 147.1 275 34.9
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 1.0e-32 145.6 410 30.7
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 1.7e-32 144.8 294 32.7
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 6.5e-32 142.9 258 37.6
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 4.2e-31 140.2 415 29.9
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 9.3e-31 139.0 389 30.3
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 1.2e-30 138.7 382 30.6
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 1.6e-30 138.3 312 33.3
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.6e-30 138.3 398 29.9
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 2.7e-30 137.5 304 32.6
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 6.1e-30 136.3 301 33.2
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 6.1e-30 136.3 352 29.8
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 2.3e-29 134.4 278 33.5
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 3.9e-29 133.7 296 31.4
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 1.5e-28 131.7 402 29.1
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 2.5e-28 131.0 316 30.7
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 4.3e-28 130.2 404 27.2
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 4.3e-28 130.2 162 44.4
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 4.3e-28 130.2 234 36.3
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 5.7e-28 129.8 162 44.4
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 7.4e-28 129.4 272 33.8
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 1.6e-27 128.3 403 28.3
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 2.8e-27 127.5 181 38.7
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 1.4e-26 125.2 167 46.1
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.4e-26 124.4 422 25.6
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 6.5e-24 116.3 425 27.5
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 8.5e-24 115.9 270 34.1
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 1.9e-23 114.8 244 34.8
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.9e-23 114.8 142 45.1
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 1.6e-22 111.7 453 25.6
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 6.1e-22 109.8 410 28.0
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 1.4e-21 108.6 159 37.7
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 1.8e-21 108.2 410 27.6
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 3.0e-21 107.5 409 27.9
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 5.1e-21 106.7 411 29.2
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 8.8e-21 105.9 438 26.5
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 1.3e-19 102.1 410 28.5
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 3.7e-19 100.5 273 32.2
ECA191G0006 Erigeron canadensis HOM05D000003 ORTHO05D000004 4.1e-18 97.1 77 64.9
Oeu021470.1 Olea europaea HOM05D003538 ORTHO05D004376 6.9e-18 96.3 118 43.2
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 9.1e-18 95.9 130 40.8
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 1.5e-17 95.1 150 35.3
Sc18g0001870 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.3e-16 92.0 196 35.2
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 4.7e-14 83.6 149 34.2
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 7.4e-12 76.3 137 31.4
Mapoly0075s0033 Marchantia polymorpha HOM05D003538 ORTHO05D004376 1.4e-10 72.0 443 22.6
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 1.8e-10 71.6 286 26.2
ECA174G0001 Erigeron canadensis HOM05D000003 ORTHO05D004376 4.1e-10 70.5 54 66.7
ECA233G5799 Erigeron canadensis HOM05D007313 ORTHO05D005299 3.5e-09 67.4 39 82.1
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 4.5e-09 67.0 236 27.5
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 1.5e-07 62.0 175 25.7
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 2.1e-06 58.2 93 30.1
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 2.1e-06 58.2 93 30.1


User provided reference genes

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