Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G1505 Erigeron canadensis HOM05D003900 ORTHO05D005009 3.3e-171 605.9 596 100.0
HanXRQChr04g0120801 Helianthus annuus HOM05D003900 ORTHO05D005009 7.3e-102 375.6 594 77.6
Lsat_1_v5_gn_7_2720 Lactuca sativa HOM05D003900 ORTHO05D005009 2.1e-85 320.9 595 72.1
CSS0000093 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 3.0e-55 220.7 286 55.6
CSS0016355 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 3.0e-55 220.7 286 55.6
Dinv43863 Davidia involucrata HOM05D003900 ORTHO05D005009 9.7e-54 215.7 285 56.5
Lj7C507T1 Lonicera japonica HOM05D003900 ORTHO05D005009 5.9e-51 206.5 217 49.3
GSVIVG01026966001 Vitis vinifera HOM05D003900 ORTHO05D005009 1.3e-50 205.3 285 56.1
Rhsim07G0010500 Rhododendron simsii HOM05D003900 ORTHO05D005009 5.0e-50 203.4 215 49.3
Atru.chr5.581 Acer truncatum HOM05D003900 ORTHO05D005009 5.5e-49 199.9 285 53.0
Atru.chr5.563 Acer truncatum HOM05D003900 ORTHO05D005009 9.4e-49 199.1 285 52.6
AUR62004412 Chenopodium quinoa HOM05D003900 ORTHO05D005009 8.8e-47 192.6 398 52.5
Peaxi162Scf00020g00155 Petunia axillaris HOM05D003900 ORTHO05D005009 1.1e-46 192.2 216 45.4
TAR629G0263 Trochodendron aralioides HOM05D003900 ORTHO05D005009 1.1e-46 192.2 284 54.2
EL10Ac1g00355 Beta vulgaris HOM05D003900 ORTHO05D005009 1.7e-45 188.3 217 42.9
QL04p055515 Quercus lobata HOM05D003900 ORTHO05D005009 2.8e-45 187.6 215 46.0
Oeu015216.1 Olea europaea HOM05D003900 ORTHO05D005009 3.7e-45 187.2 196 48.5
Thecc.01G352500 Theobroma cacao HOM05D003900 ORTHO05D005009 3.7e-45 187.2 217 43.8
Duzib138G1643 Durio zibethinus HOM05D003900 ORTHO05D005009 4.8e-45 186.8 214 44.9
Nitab4.5_0010695g0010 Nicotiana tabacum HOM05D003900 ORTHO05D005009 1.4e-44 185.3 212 43.4
vmacro13229 Vaccinium macrocarpon HOM05D003900 ORTHO05D005009 1.4e-44 185.3 217 47.0
Ah.15g096610 Amaranthus hybridus HOM05D003900 ORTHO05D005009 1.8e-44 184.9 391 48.8
Sc01g0003220 Simmondsia chinensis HOM05D003900 ORTHO05D005009 1.8e-44 184.9 285 51.9
CAN.G78.130 Capsicum annuum HOM05D003900 ORTHO05D005009 2.4e-44 184.5 212 46.2
Lj4g0005982 Lotus japonicus HOM05D003900 ORTHO05D005009 3.1e-44 184.1 197 50.3
AUR62022618 Chenopodium quinoa HOM05D003900 ORTHO05D005009 1.2e-43 182.2 398 51.8
Nitab4.5_0000915g0110 Nicotiana tabacum HOM05D003900 ORTHO05D005009 1.2e-43 182.2 212 42.0
Dinv32521 Davidia involucrata HOM05D003900 ORTHO05D005009 2.0e-43 181.4 189 48.7
TWI23G0979 Tripterygium wilfordii HOM05D003900 ORTHO05D005009 2.0e-43 181.4 285 50.5
CiPaw.01G066600 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.0e-42 179.1 206 45.1
Cc02_g38560 Coffea canephora HOM05D003900 ORTHO05D005009 1.3e-42 178.7 212 41.0
FvH4_7g15360 Fragaria vesca HOM05D003900 ORTHO05D005009 1.7e-42 178.3 387 46.0
Phvul.002G326200 Phaseolus vulgaris HOM05D003900 ORTHO05D005009 1.7e-42 178.3 215 45.1
Nn1g01685 Nelumbo nucifera HOM05D003900 ORTHO05D005009 2.2e-42 177.9 285 51.2
PGSC0003DMG400000195 Solanum tuberosum HOM05D003900 ORTHO05D005009 2.2e-42 177.9 215 43.3
CiPaw.01G067100 Carya illinoinensis HOM05D003900 ORTHO05D005009 2.9e-42 177.6 204 45.6
Haze_15564 Corylus avellana HOM05D003900 ORTHO05D005009 2.9e-42 177.6 206 45.6
Psat7g005640 Pisum sativum HOM05D003900 ORTHO05D005009 2.9e-42 177.6 200 47.0
CiPaw.01G067400 Carya illinoinensis HOM05D003900 ORTHO05D005009 3.8e-42 177.2 206 46.1
Medtr8g098755 Medicago truncatula HOM05D003900 ORTHO05D005009 3.8e-42 177.2 206 46.1
Solyc01g095110.4 Solanum lycopersicum HOM05D003900 ORTHO05D005009 3.8e-42 177.2 215 42.3
TPR.G2949 Trifolium pratense HOM05D003900 ORTHO05D005009 5.0e-42 176.8 197 48.7
CiPaw.01G067500 Carya illinoinensis HOM05D003900 ORTHO05D005009 8.5e-42 176.0 208 45.2
CiPaw.01G066800 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.1e-41 175.6 285 52.3
MD01G1071400 Malus domestica HOM05D003900 ORTHO05D005009 1.1e-41 175.6 286 50.3
MD07G1131300 Malus domestica HOM05D003900 ORTHO05D005009 1.1e-41 175.6 286 50.0
Actinidia20162 Actinidia chinensis HOM05D003900 ORTHO05D005009 1.4e-41 175.3 204 46.1
Duzib133G1046 Durio zibethinus HOM05D003900 ORTHO05D005009 1.9e-41 174.9 215 42.3
Prupe.2G177500 Prunus persica HOM05D003900 ORTHO05D005009 3.2e-41 174.1 213 43.2
RcHm_v2.0_Chr1g0357681 Rosa chinensis HOM05D003900 ORTHO05D005009 9.4e-41 172.6 285 48.4
Sopen01g038900 Solanum pennellii HOM05D003900 ORTHO05D005009 9.4e-41 172.6 215 41.9
BcaC08g45129 Brassica carinata HOM05D003900 ORTHO05D005009 1.6e-40 171.8 402 40.8
CiPaw.01G067200 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.6e-40 171.8 206 44.2
Gohir.D12G110200 Gossypium hirsutum HOM05D003900 ORTHO05D005009 2.7e-40 171.0 215 41.4
RcHm_v2.0_Chr7g0228211 Rosa chinensis HOM05D003900 ORTHO05D005009 2.7e-40 171.0 206 42.7
COL.COLO4_12777 Corchorus olitorius HOM05D003900 ORTHO05D005009 3.6e-40 170.6 217 42.4
PSO266G0010 Papaver somniferum HOM05D003900 ORTHO05D005009 3.6e-40 170.6 214 41.6
CiPaw.01G067300 Carya illinoinensis HOM05D003900 ORTHO05D005009 4.7e-40 170.2 204 44.1
Gorai.008G119500 Gossypium raimondii HOM05D003900 ORTHO05D005009 6.1e-40 169.9 215 41.4
VMungo0251G1173 Vigna mungo HOM05D003900 ORTHO05D005009 1.0e-39 169.1 213 43.7
FvH4_5g32150 Fragaria vesca HOM05D003900 ORTHO05D005009 1.4e-39 168.7 206 40.8
Lalb_Chr04g0259301 Lupinus albus HOM05D003900 ORTHO05D005009 1.4e-39 168.7 210 45.2
CsaV3_7G025780 Cucumis sativus L. HOM05D003900 ORTHO05D005009 1.8e-39 168.3 203 41.9
FAN06G0440 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.8e-39 168.3 205 41.5
FAN03G2211 Fragaria x ananassa HOM05D003900 ORTHO05D005009 3.9e-39 167.2 205 41.5
FAN04G0755 Fragaria x ananassa HOM05D003900 ORTHO05D005009 5.1e-39 166.8 206 40.8
Gohir.A12G106900 Gossypium hirsutum HOM05D003900 ORTHO05D005009 5.1e-39 166.8 215 40.9
MELO3C029134.2 Cucumis melo HOM05D003900 ORTHO05D005009 6.7e-39 166.4 215 39.1
FAN10G3614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 6.7e-39 166.4 205 42.0
FAN01G0431 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.0e-38 164.9 205 41.5
THA.LOC104817316 Tarenaya hassleriana HOM05D003900 ORTHO05D005009 2.0e-38 164.9 210 41.9
Thhalv10001319m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 3.3e-38 164.1 212 41.0
CANSAT56G3111 Cannabis sativa HOM05D003900 ORTHO05D005009 5.7e-38 163.3 191 42.4
FAN06G4981 Fragaria x ananassa HOM05D003900 ORTHO05D005009 5.7e-38 163.3 386 35.0
BcaB02g07375 Brassica carinata HOM05D003900 ORTHO05D005009 9.7e-38 162.5 214 42.5
ClCG09G009150 Citrullus lanatus HOM05D003900 ORTHO05D005009 9.7e-38 162.5 209 40.2
Manes.01G252300 Manihot esculenta HOM05D003900 ORTHO05D005009 1.3e-37 162.2 212 39.6
Sp4g28170 Schrenkiella parvula HOM05D003900 ORTHO05D005009 1.3e-37 162.2 215 41.4
C06p27530 Brassica napus HOM05D003900 ORTHO05D005009 1.7e-37 161.8 215 43.3
Sabra14G0065500 Salix brachista HOM05D003900 ORTHO05D005009 1.7e-37 161.8 215 38.1
A07p25540 Brassica napus HOM05D003900 ORTHO05D005009 2.2e-37 161.4 215 43.3
BolC6t37920H Brassica oleracea HOM05D003900 ORTHO05D005009 2.2e-37 161.4 215 42.8
PSO384G0446 Papaver somniferum HOM05D003900 ORTHO05D005009 2.8e-37 161.0 208 38.5
Potri.014G090400 Populus trichocarpa HOM05D003900 ORTHO05D005009 2.8e-37 161.0 205 38.5
Aa31LG1G27520 Aethionema arabicum HOM05D003900 ORTHO05D005009 4.8e-37 160.2 215 40.5
CARHR171850 Cardamine hirsuta HOM05D003900 ORTHO05D005009 6.3e-37 159.8 208 42.3
BraA07t30195Z Brassica rapa HOM05D003900 ORTHO05D005009 8.2e-37 159.5 215 42.8
Glyma.16G031800 Glycine max HOM05D003900 ORTHO05D005009 8.2e-37 159.5 201 44.3
PGR142G0969 Punica granatum HOM05D003900 ORTHO05D005009 1.1e-36 159.1 388 47.4
FvH4_5g03011 Fragaria vesca HOM05D003900 ORTHO05D005009 1.4e-36 158.7 203 39.9
Sed0017189 Sechium edule HOM05D003900 ORTHO05D005009 1.4e-36 158.7 190 42.6
Manes.05G029400 Manihot esculenta HOM05D003900 ORTHO05D005009 3.1e-36 157.5 212 36.8
Aa31LG10G15460 Aethionema arabicum HOM05D003900 ORTHO05D005009 4.1e-36 157.1 200 42.0
AL5G43880 Arabidopsis lyrata HOM05D003900 ORTHO05D005009 5.3e-36 156.8 214 41.1
arahy.Tifrunner.gnm1.ann1.U9H0N8 Arachis hypogaea HOM05D003900 ORTHO05D005009 5.3e-36 156.8 209 41.1
Carub.0005s2821 Capsella rubella HOM05D003900 ORTHO05D005009 7.0e-36 156.4 214 40.2
AT3G61520 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 1.2e-35 155.6 214 41.1
AT5G28370 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 2.0e-35 154.8 214 41.1
AT5G28460 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 2.0e-35 154.8 214 41.1
FAN10G1060 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.6e-35 154.5 186 45.7
Migut.B01798 Erythranthe guttata HOM05D003900 ORTHO05D005009 7.7e-35 152.9 209 38.8
MBI11_g19575_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 1.0e-34 152.5 204 40.2
SalBow3G3666 Salvia bowleyana HOM05D003900 ORTHO05D005009 2.2e-34 151.4 207 39.6
Thhalv10022571m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 1.1e-33 149.1 214 39.7
arahy.Tifrunner.gnm1.ann1.K45FBX Arachis hypogaea HOM05D003900 ORTHO05D005009 1.5e-33 148.7 209 39.7
SGA_v2.0_scaffold4G02283 Striga asiatica HOM05D003900 ORTHO05D005009 2.5e-33 147.9 207 34.3
FAN06G2614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 5.5e-33 146.7 196 38.3
DCAR_025213 Daucus carota HOM05D003900 ORTHO05D005009 8.0e-32 142.9 215 36.7
Eucgr.E00097 Eucalyptus grandis HOM05D003900 ORTHO05D005009 3.0e-31 141.0 217 34.1
RcHm_v2.0_Chr5g0017031 Rosa chinensis HOM05D003900 ORTHO05D005009 3.0e-31 141.0 152 48.0
Aqoxy7G01955 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 6.7e-31 139.8 370 33.2
Ca_17228_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005009 2.0e-27 128.3 192 41.1
Ciclev10019067m.g Citrus clementina HOM05D003900 ORTHO05D005009 6.5e-26 123.2 208 35.6
CDE10G0308 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 3.2e-25 120.9 174 36.2
ATR0721G158 Amborella trichopoda HOM05D003900 ORTHO05D005009 1.6e-24 118.6 202 37.1
HPP92_011504 Vanilla planifolia HOM05D003900 ORTHO05D005009 1.8e-23 115.2 205 32.7
RcHm_v2.0_Chr3g0468501 Rosa chinensis HOM05D003900 ORTHO05D005009 1.5e-22 112.1 205 33.7
VMungo0251G0997 Vigna mungo HOM05D003900 ORTHO05D005009 2.4e-20 104.8 163 37.4
FAN18G1403 Fragaria x ananassa HOM05D003900 ORTHO05D005009 2.7e-19 101.3 99 49.5
Cfa003873 Carpinus fangiana HOM05D003900 ORTHO05D005009 3.5e-19 100.9 215 31.6
Medtr3g088810 Medicago truncatula HOM05D003900 ORTHO05D005009 1.0e-18 99.4 131 39.7
Aqoxy4G00899 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 3.2e-17 94.4 180 34.4
FAN18G4460 Fragaria x ananassa HOM05D003900 ORTHO05D005009 3.6e-16 90.9 206 30.6
RcHm_v2.0_Chr7g0228291 Rosa chinensis HOM05D003900 ORTHO05D005009 4.0e-15 87.4 81 51.9
CARHR141390 Cardamine hirsuta HOM05D003900 ORTHO05D005009 5.2e-15 87.0 118 39.0
MBI11_g19576_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 4.4e-14 84.0 135 34.1
SEGI_36951 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 4.1e-12 77.4 140 30.0
Aqoxy7G01324 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 2.3e-10 71.6 176 32.4
Aqoxy2G02642 Aquilegia oxysepala HOM05D003900 ORTHO05D016547 5.0e-10 70.5 173 31.2
CAN.G609.3 Capsicum annuum HOM05D003900 ORTHO05D005009 1.1e-09 69.3 152 34.2
CAN.G1005.2 Capsicum annuum HOM05D003900 ORTHO05D005009 1.5e-09 68.9 56 58.9
SEGI_22559 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 1.5e-09 68.9 85 40.0
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 2.5e-09 68.2 177 27.7
Haze_09312 Corylus avellana HOM05D002453 ORTHO05D008746 3.3e-09 67.8 155 29.7
HanXRQChr05g0140981 Helianthus annuus HOM05D003900 ORTHO05D005009 4.3e-09 67.4 48 66.7
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 7.2e-09 66.6 51 62.7
QL08p056726 Quercus lobata HOM05D002453 ORTHO05D008746 1.2e-08 65.9 155 27.1
SEGI_08205 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 3.6e-08 64.3 88 36.4
SEGI_03438 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 4.7e-08 63.9 89 37.1
Aqoxy7G03291 Aquilegia oxysepala HOM05D003900 ORTHO05D016547 6.1e-08 63.5 113 32.7
Cfa019553 Carpinus fangiana HOM05D002453 ORTHO05D008746 6.1e-08 63.5 155 28.4
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 8.0e-08 63.2 137 25.5
Migut.B00504 Erythranthe guttata HOM05D005362 ORTHO05D006895 1.0e-07 62.8 200 29.0
Aqoxy3G00090 Aquilegia oxysepala HOM05D006707 ORTHO05D008243 1.4e-07 62.4 94 36.2
HPP92_026675 Vanilla planifolia HOM05D000424 ORTHO05D000355 1.4e-07 62.4 175 25.7
SEGI_28461 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 1.8e-07 62.0 86 34.9
HPP92_018012 Vanilla planifolia HOM05D000424 ORTHO05D000355 1.8e-07 62.0 175 25.7
Migut.E01794 Erythranthe guttata HOM05D006556 ORTHO05D008146 3.0e-07 61.2 175 28.0
Atru.BG.208.p Acer truncatum HOM05D000424 ORTHO05D000355 4.0e-07 60.8 128 28.9
A05p18370 Brassica napus HOM05D002753 ORTHO05D003097 4.0e-07 60.8 86 36.0
BraA05t20727Z Brassica rapa HOM05D002753 ORTHO05D003097 4.0e-07 60.8 86 36.0
MSTRG.11331 Avicennia marina HOM05D005362 ORTHO05D006895 5.2e-07 60.5 177 28.8
SEGI_05946 Sequoiadendron giganteum HOM05D003900 ORTHO05D050885 6.8e-07 60.1 106 34.0
SGA_v2.0_scaffold73G24233 Striga asiatica HOM05D000424 ORTHO05D000355 6.8e-07 60.1 179 26.3
SEGI_07919 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 8.9e-07 59.7 71 42.3
SEGI_18390 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 8.9e-07 59.7 84 36.9
THA.LOC104810436 Tarenaya hassleriana HOM05D002453 ORTHO05D008746 2.0e-06 58.5 89 36.0
Gohir.A12G183600 Gossypium hirsutum HOM05D005362 ORTHO05D006895 2.6e-06 58.2 156 29.5
Zm00001eb373330 Zea mays HOM05D000424 ORTHO05D000355 2.6e-06 58.2 127 28.3
Atru.BG.229.p Acer truncatum HOM05D006218 ORTHO05D007338 3.4e-06 57.8 179 26.3
RcHm_v2.0_Chr7g0184831 Rosa chinensis HOM05D002453 ORTHO05D008746 3.4e-06 57.8 160 24.4
Nitab4.5_0003706g0010 Nicotiana tabacum HOM05D002453 ORTHO05D008746 4.4e-06 57.4 157 25.5
PSO017G2639 Papaver somniferum HOM05D005362 ORTHO05D006895 4.4e-06 57.4 184 29.3
PSO478G3079 Papaver somniferum HOM05D005362 ORTHO05D006895 4.4e-06 57.4 184 28.8
MD06G1203500 Malus domestica HOM05D005362 ORTHO05D006895 5.7e-06 57.0 144 31.9
Nitab4.5_0000939g0040 Nicotiana tabacum HOM05D005362 ORTHO05D006895 5.7e-06 57.0 143 31.5
Os01g0505500 Oryza sativa ssp. japonica HOM05D000424 ORTHO05D000355 5.7e-06 57.0 124 28.2
FvH4_5g29994 Fragaria vesca HOM05D005362 ORTHO05D006895 7.5e-06 56.6 146 30.1
FAN13G2767 Fragaria x ananassa HOM05D005362 ORTHO05D006895 7.5e-06 56.6 146 30.1
FAN18G1237 Fragaria x ananassa HOM05D005362 ORTHO05D006895 7.5e-06 56.6 146 30.1
Nitab4.5_0006134g0060 Nicotiana tabacum HOM05D000424 ORTHO05D000355 7.5e-06 56.6 178 23.0
CARHR011930 Cardamine hirsuta HOM05D000891 ORTHO05D000761 9.8e-06 56.2 184 23.9
ECA236G5119 Erigeron canadensis HOM05D000744 ORTHO05D000332 9.8e-06 56.2 126 28.6
Gohir.D12G186500 Gossypium hirsutum HOM05D005362 ORTHO05D006895 9.8e-06 56.2 156 28.8
Gorai.008G199900 Gossypium raimondii HOM05D005362 ORTHO05D006895 9.8e-06 56.2 156 28.8
Medtr2g100200 Medicago truncatula HOM05D006218 ORTHO05D007338 9.8e-06 56.2 152 27.0
Solyc12g014330.1 Solanum lycopersicum HOM05D002453 ORTHO05D008746 9.8e-06 56.2 156 23.7


User provided reference genes

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