Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G1448 Erigeron canadensis HOM05D004548 ORTHO05D005402 2.3e-117 425.6 220 100.0
HanXRQChr04g0124971 Helianthus annuus HOM05D004548 ORTHO05D005402 1.5e-105 386.3 216 89.8
Lsat_1_v5_gn_5_6480 Lactuca sativa HOM05D004548 ORTHO05D005402 2.9e-96 355.5 217 81.6
Lsat_1_v5_gn_8_83161 Lactuca sativa HOM05D004548 ORTHO05D005402 2.9e-96 355.5 217 81.6
Lj1A1122T48 Lonicera japonica HOM05D004548 ORTHO05D005402 1.8e-90 336.3 216 73.1
SGA_v2.0_scaffold77G25307 Striga asiatica HOM05D004548 ORTHO05D005402 4.6e-86 321.6 216 71.3
Nitab4.5_0001348g0030 Nicotiana tabacum HOM05D004548 ORTHO05D005402 6.0e-86 321.2 217 70.5
Nitab4.5_0007144g0020 Nicotiana tabacum HOM05D004548 ORTHO05D005402 6.0e-86 321.2 217 70.5
TAR374G1650 Trochodendron aralioides HOM05D004548 ORTHO05D005402 1.0e-85 320.5 220 69.5
Peaxi162Scf01242g00029 Petunia axillaris HOM05D004548 ORTHO05D005402 2.3e-85 319.3 217 69.6
Aqoxy1G02233 Aquilegia oxysepala HOM05D004548 ORTHO05D005402 3.9e-85 318.5 216 69.4
Hma1.2p1_0738F.1_g210920 Hydrangea macrophylla HOM05D004548 ORTHO05D005402 8.7e-85 317.4 222 68.0
GSVIVG01025270001 Vitis vinifera HOM05D004548 ORTHO05D005402 2.5e-84 315.8 217 68.7
MSTRG.17963 Avicennia marina HOM05D004548 ORTHO05D005402 3.3e-84 315.5 214 69.6
CSS0047568 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 4.3e-84 315.1 216 70.8
Solyc06g082980.3 Solanum lycopersicum HOM05D004548 ORTHO05D005402 5.6e-84 314.7 217 66.8
Sopen06g034370 Solanum pennellii HOM05D004548 ORTHO05D005402 5.6e-84 314.7 217 66.8
CAN.G874.37 Capsicum annuum HOM05D004548 ORTHO05D005402 1.3e-83 313.5 217 67.7
PGSC0003DMG400027684 Solanum tuberosum HOM05D004548 ORTHO05D005402 2.1e-83 312.8 217 66.4
Migut.N00675 Erythranthe guttata HOM05D004548 ORTHO05D005402 2.8e-83 312.4 216 69.0
Peaxi162Scf00235g00217 Petunia axillaris HOM05D004548 ORTHO05D005402 1.1e-82 310.5 216 69.0
Atru.chr12.1469 Acer truncatum HOM05D004548 ORTHO05D005402 6.9e-82 307.8 217 69.1
Gohir.D09G002300 Gossypium hirsutum HOM05D004548 ORTHO05D005402 2.6e-81 305.8 216 69.0
Prupe.1G211800 Prunus persica HOM05D004548 ORTHO05D005402 3.4e-81 305.4 216 68.5
Gohir.A09G002500 Gossypium hirsutum HOM05D004548 ORTHO05D005402 4.5e-81 305.1 216 68.5
Gorai.006G002800 Gossypium raimondii HOM05D004548 ORTHO05D005402 5.8e-81 304.7 216 68.5
Oeu058204.1 Olea europaea HOM05D004548 ORTHO05D005402 7.6e-81 304.3 216 68.1
Duzib187G0077 Durio zibethinus HOM05D004548 ORTHO05D005402 1.0e-80 303.9 216 68.1
Oeu058206.1 Olea europaea HOM05D004548 ORTHO05D005402 1.0e-80 303.9 216 67.6
Rhsim12G0068000 Rhododendron simsii HOM05D004548 ORTHO05D005402 2.2e-80 302.8 216 68.1
Thecc.01G240000 Theobroma cacao HOM05D004548 ORTHO05D005402 2.9e-80 302.4 216 68.5
Manes.12G130500 Manihot esculenta HOM05D004548 ORTHO05D005402 8.4e-80 300.8 216 67.1
Ciclev10029256m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.9e-79 299.7 217 67.7
Eucgr.J01653 Eucalyptus grandis HOM05D004548 ORTHO05D005402 1.9e-79 299.7 216 68.1
ClCG07G012080 Citrullus lanatus HOM05D004548 ORTHO05D005402 3.2e-79 298.9 216 66.2
PSO675G5153 Papaver somniferum HOM05D004548 ORTHO05D005402 9.3e-79 297.4 220 65.5
PGR119G2305 Punica granatum HOM05D004548 ORTHO05D005402 9.3e-79 297.4 218 66.1
CsaV3_4G002070 Cucumis sativus L. HOM05D004548 ORTHO05D005402 1.2e-78 297.0 217 65.4
Sed0003942 Sechium edule HOM05D004548 ORTHO05D005402 1.2e-78 297.0 214 67.3
RcHm_v2.0_Chr4g0428441 Rosa chinensis HOM05D004548 ORTHO05D005402 1.6e-78 296.6 216 66.7
FvH4_4g22210 Fragaria vesca HOM05D004548 ORTHO05D005402 2.1e-78 296.2 216 67.1
PSO541G3463 Papaver somniferum HOM05D004548 ORTHO05D005402 2.1e-78 296.2 220 65.0
FAN07G0049 Fragaria x ananassa HOM05D004548 ORTHO05D005402 2.7e-78 295.8 216 67.1
MBI07_g42009_MAGBIO Magnolia biondii HOM05D004548 ORTHO05D005402 3.5e-78 295.4 220 66.4
CiPaw.06G111100 Carya illinoinensis HOM05D004548 ORTHO05D005402 6.0e-78 294.7 216 65.7
SalBow3G2027 Salvia bowleyana HOM05D004548 ORTHO05D005402 6.0e-78 294.7 216 64.4
Nn4g22076 Nelumbo nucifera HOM05D004548 ORTHO05D005402 1.3e-77 293.5 214 66.8
MELO3C017829.2 Cucumis melo HOM05D004548 ORTHO05D005402 1.8e-77 293.1 217 64.5
FAN12G2246 Fragaria x ananassa HOM05D004548 ORTHO05D005402 3.0e-77 292.4 216 66.2
Cfa019955 Carpinus fangiana HOM05D004548 ORTHO05D005402 6.7e-77 291.2 216 66.7
COL.COLO4_06519 Corchorus olitorius HOM05D004548 ORTHO05D005402 2.5e-76 289.3 218 65.1
QL03p048368 Quercus lobata HOM05D004548 ORTHO05D005402 2.5e-76 289.3 215 66.5
Potri.003G160500 Populus trichocarpa HOM05D004548 ORTHO05D005402 1.3e-75 287.0 216 64.8
Cc01_g15960 Coffea canephora HOM05D004548 ORTHO05D005402 2.1e-75 286.2 214 61.7
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 6.3e-75 284.6 196 71.4
TWI18G0021 Tripterygium wilfordii HOM05D004548 ORTHO05D005402 6.3e-75 284.6 218 65.6
ATR0665G198 Amborella trichopoda HOM05D004548 ORTHO05D005402 1.1e-74 283.9 212 63.7
Sc17g0004750 Simmondsia chinensis HOM05D004548 ORTHO05D005402 2.4e-74 282.7 216 62.0
BraA07t29333Z Brassica rapa HOM05D004548 ORTHO05D005402 3.1e-74 282.3 216 64.4
CANSAT80G0994 Cannabis sativa HOM05D004548 ORTHO05D005402 3.1e-74 282.3 222 63.1
Hund23298 Selenicereus undatus HOM05D004548 ORTHO05D005402 3.1e-74 282.3 217 62.2
unitig_0.g417 Utricularia gibba HOM05D004548 ORTHO05D005402 5.3e-74 281.6 203 70.9
A07p16050 Brassica napus HOM05D004548 ORTHO05D005402 6.9e-74 281.2 216 63.9
THA.LOC104807222 Tarenaya hassleriana HOM05D004548 ORTHO05D005402 6.9e-74 281.2 219 66.2
BcaB03g14416 Brassica carinata HOM05D004548 ORTHO05D005402 9.0e-74 280.8 216 63.4
BcaB03g14346 Brassica carinata HOM05D004548 ORTHO05D005402 1.2e-73 280.4 219 63.5
Carub.0001s1957 Capsella rubella HOM05D004548 ORTHO05D005402 2.0e-73 279.6 220 64.5
Lj2g0001774 Lotus japonicus HOM05D004548 ORTHO05D005402 2.0e-73 279.6 221 61.5
MD13G1133800 Malus domestica HOM05D004548 ORTHO05D005402 2.0e-73 279.6 222 62.2
C07p23420 Brassica napus HOM05D004548 ORTHO05D005402 4.5e-73 278.5 219 63.0
BolC7t42875H Brassica oleracea HOM05D004548 ORTHO05D005402 4.5e-73 278.5 219 63.0
Zm00001eb334120 Zea mays HOM05D004548 ORTHO05D005402 1.0e-72 277.3 207 63.3
Lalb_Chr14g0371281 Lupinus albus HOM05D004548 ORTHO05D005402 1.3e-72 276.9 218 61.9
Sp1g17810 Schrenkiella parvula HOM05D004548 ORTHO05D005402 2.2e-72 276.2 217 64.5
Glyma.09G186700 Glycine max HOM05D004548 ORTHO05D005402 2.9e-72 275.8 219 62.6
Phvul.004G160000 Phaseolus vulgaris HOM05D004548 ORTHO05D005402 2.9e-72 275.8 207 64.3
Thhalv10008732m.g Eutrema salsugineum HOM05D004548 ORTHO05D005402 6.5e-72 274.6 214 63.1
vmacro15975 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 6.5e-72 274.6 208 66.8
AL1G32850 Arabidopsis lyrata HOM05D004548 ORTHO05D005402 1.9e-71 273.1 216 61.1
CARHR020520 Cardamine hirsuta HOM05D004548 ORTHO05D005402 1.9e-71 273.1 217 62.7
Hund18283 Selenicereus undatus HOM05D004548 ORTHO05D005402 1.9e-71 273.1 209 63.2
BolC5t30565H Brassica oleracea HOM05D004548 ORTHO05D005402 2.5e-71 272.7 216 63.0
PGR119G0727 Punica granatum HOM05D004548 ORTHO05D005402 3.2e-71 272.3 218 61.0
HPP92_007022 Vanilla planifolia HOM05D004548 ORTHO05D005402 4.2e-71 271.9 211 61.1
AT1G20050 Arabidopsis thaliana HOM05D004548 ORTHO05D005402 1.2e-70 270.4 221 61.1
Aa31LG7G10030 Aethionema arabicum HOM05D004548 ORTHO05D005402 2.7e-70 269.2 215 61.9
HPP92_007039 Vanilla planifolia HOM05D004548 ORTHO05D005402 6.1e-70 268.1 212 60.4
VMungo0464G1792 Vigna mungo HOM05D004548 ORTHO05D005402 1.3e-69 266.9 215 59.5
BcaB07g32020 Brassica carinata HOM05D004548 ORTHO05D005402 2.3e-69 266.2 218 63.8
FAN17G2493 Fragaria x ananassa HOM05D004548 ORTHO05D005402 3.0e-69 265.8 273 52.4
CDE04G3258 Ceratophyllum demersum HOM05D004548 ORTHO05D005402 3.9e-69 265.4 204 61.3
BraA06t24724Z Brassica rapa HOM05D004548 ORTHO05D005402 5.1e-69 265.0 221 60.2
TPR.G38962 Trifolium pratense HOM05D004548 ORTHO05D005402 9.7e-68 260.8 217 60.4
SGA_v2.0_scaffold95G28703 Striga asiatica HOM05D004548 ORTHO05D005402 2.8e-67 259.2 194 63.9
Medtr6g084920 Medicago truncatula HOM05D004548 ORTHO05D005402 3.7e-67 258.8 219 62.1
Os01g0103600 Oryza sativa ssp. japonica HOM05D004548 ORTHO05D005402 5.3e-66 255.0 217 58.5
Glyma.09G186900 Glycine max HOM05D004548 ORTHO05D005402 2.6e-65 252.7 218 56.9
SEGI_00448 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 4.5e-65 251.9 212 57.1
CSS0047688 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 2.2e-64 249.6 209 55.5
CSS0003180 Camellia sinensis var. sinensis HOM05D004548 ORTHO05D005402 2.9e-64 249.2 209 55.5
AUR62013297 Chenopodium quinoa HOM05D004548 ORTHO05D005402 2.9e-64 249.2 205 59.0
Glyma.09G186800 Glycine max HOM05D004548 ORTHO05D005402 5.0e-64 248.4 203 59.6
BcaC05g25903 Brassica carinata HOM05D004548 ORTHO05D005402 8.5e-64 247.7 199 64.3
TPR.G38981 Trifolium pratense HOM05D004548 ORTHO05D005402 8.5e-64 247.7 217 59.4
BcaB03g14342 Brassica carinata HOM05D004548 ORTHO05D005402 2.5e-63 246.1 216 58.3
EL10Ac8g18737 Beta vulgaris HOM05D004548 ORTHO05D005402 3.2e-63 245.7 211 56.9
A06p16180 Brassica napus HOM05D004548 ORTHO05D005402 2.1e-62 243.0 200 62.0
Nn3g16208 Nelumbo nucifera HOM05D004548 ORTHO05D005402 4.6e-62 241.9 171 67.8
DCAR_019172 Daucus carota HOM05D004548 ORTHO05D005402 2.3e-61 239.6 167 68.9
BcaB03g14411 Brassica carinata HOM05D004548 ORTHO05D005402 3.9e-61 238.8 216 57.4
arahy.Tifrunner.gnm1.ann1.L8Q3U6 Arachis hypogaea HOM05D004548 ORTHO05D005402 2.6e-60 236.1 185 65.9
arahy.Tifrunner.gnm1.ann1.Y6E3CC Arachis hypogaea HOM05D004548 ORTHO05D005402 3.3e-60 235.7 177 67.8
SMO119G0501 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 2.6e-57 226.1 214 52.3
Pp3c9_19720 Physcomitrium patens HOM05D004548 ORTHO05D005402 4.5e-57 225.3 215 53.0
AUR62011188 Chenopodium quinoa HOM05D004548 ORTHO05D005402 7.7e-57 224.6 172 61.6
Zm00001eb126960 Zea mays HOM05D004548 ORTHO05D005402 1.3e-56 223.8 219 50.7
Ca_25508_v3 Cicer arietinum L. HOM05D004548 ORTHO05D005402 2.2e-56 223.0 184 63.0
BcaC05g25905 Brassica carinata HOM05D004548 ORTHO05D005402 3.8e-56 222.2 207 59.9
Mapoly0026s0030 Marchantia polymorpha HOM05D004548 ORTHO05D005402 1.4e-55 220.3 208 54.3
TPR.G21858 Trifolium pratense HOM05D004548 ORTHO05D005402 1.4e-55 220.3 175 64.6
AagrBONN_evm.TU.Sc2ySwM_228.5752 Anthoceros agrestis HOM05D004548 ORTHO05D005402 3.2e-55 219.2 205 51.2
Ciclev10002435m.g Citrus clementina HOM05D004548 ORTHO05D005402 7.2e-55 218.0 212 49.5
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 9.4e-55 217.6 171 61.4
Ciclev10029254m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.2e-54 217.2 212 50.0
Haze_12526 Corylus avellana HOM05D004548 ORTHO05D005402 2.1e-54 216.5 213 54.5
Psat1g039080 Pisum sativum HOM05D004548 ORTHO05D005402 4.8e-51 205.3 155 64.5
MD16G1144400 Malus domestica HOM05D004548 ORTHO05D005402 1.6e-49 200.3 165 61.8
EL10Ac8g18743 Beta vulgaris HOM05D004548 ORTHO05D005402 2.0e-49 199.9 210 45.2
Cfa009469 Carpinus fangiana HOM05D004548 ORTHO05D005402 2.6e-49 199.5 150 66.7
vmacro04885 Vaccinium macrocarpon HOM05D004548 ORTHO05D005402 2.6e-49 199.5 216 50.9
SMO196G0274 Selaginella moellendorffii HOM05D004548 ORTHO05D005402 7.7e-49 198.0 198 47.5
C05p18540 Brassica napus HOM05D004548 ORTHO05D005402 9.4e-47 191.0 217 50.2
Sabra03G0116700 Salix brachista HOM05D004548 ORTHO05D005402 3.3e-44 182.6 216 48.1
SEGI_03556 Sequoiadendron giganteum HOM05D004548 ORTHO05D005402 1.4e-42 177.2 109 75.2
BcaC05g25899 Brassica carinata HOM05D004548 ORTHO05D005402 5.3e-42 175.3 217 47.9
Ciclev10006027m.g Citrus clementina HOM05D004548 ORTHO05D005402 1.7e-40 170.2 150 50.0
Actinidia09588 Actinidia chinensis HOM05D004548 ORTHO05D005402 4.2e-39 165.6 126 69.0
EL10Ac8g18745 Beta vulgaris HOM05D004548 ORTHO05D005402 8.0e-38 161.4 210 39.0
Oeu051508.1 Olea europaea HOM05D004548 ORTHO05D005402 3.0e-37 159.5 97 72.2
EL10Ac8g18747 Beta vulgaris HOM05D004548 ORTHO05D005402 9.8e-36 154.5 183 43.2
Ah.14g079290 Amaranthus hybridus HOM05D004548 ORTHO05D005402 4.8e-35 152.1 213 43.2
Sabra01G0049300 Salix brachista HOM05D004548 ORTHO05D000739 1.4e-34 150.6 103 71.8
Cre12.g557900 Chlamydomonas reinhardtii HOM05D004548 ORTHO05D005402 2.4e-34 149.8 214 36.4
Mapoly0072s0066 Marchantia polymorpha HOM05D004548 ORTHO05D005402 3.1e-34 149.4 202 40.1
Ah.09g224580 Amaranthus hybridus HOM05D004548 ORTHO05D005402 2.0e-33 146.7 210 42.4
Potri.001G070301 Populus trichocarpa HOM05D004548 ORTHO05D005402 6.1e-30 135.2 96 64.6
EL10Ac8g18746 Beta vulgaris HOM05D004548 ORTHO05D005402 2.8e-27 126.3 210 35.7
CBR_g55168 Chara braunii HOM05D004548 ORTHO05D005402 3.7e-27 125.9 128 46.1
EL10Ac8g18744 Beta vulgaris HOM05D004548 ORTHO05D005402 2.4e-26 123.2 210 34.8
FAN12G3080 Fragaria x ananassa HOM05D004548 ORTHO05D005402 1.0e-24 117.9 175 42.9
Nitab4.5_0000038g0240 Nicotiana tabacum HOM05D004548 ORTHO05D005402 3.8e-24 115.9 90 57.8
COL.COLO4_05696 Corchorus olitorius HOM05D004548 ORTHO05D005402 2.5e-23 113.2 88 64.8
Psat5g295440 Pisum sativum HOM05D004548 ORTHO05D005402 9.8e-20 101.3 82 56.1
Oeu018311.3 Olea europaea HOM05D004548 ORTHO05D005402 3.9e-16 89.4 196 36.7
MELO3C030902.2 Cucumis melo HOM05D004548 ORTHO05D005402 5.6e-15 85.5 86 52.3
Ah.16g106680 Amaranthus hybridus HOM05D004548 ORTHO05D005402 2.1e-14 83.6 68 61.8
Oeu018323.1 Olea europaea HOM05D004548 ORTHO05D005402 9.5e-07 58.2 65 47.7


User provided reference genes

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