Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G1160 Erigeron canadensis HOM05D000213 ORTHO05D000426 5.3e-73 278.1 198 100.0
HanXRQChr04g0116751 Helianthus annuus HOM05D000213 ORTHO05D000426 1.2e-45 187.2 189 70.9
Lsat_1_v5_gn_7_25760 Lactuca sativa HOM05D000213 ORTHO05D000426 1.4e-44 183.7 186 65.1
HanXRQChr15g0480811 Helianthus annuus HOM05D000213 ORTHO05D000426 6.5e-39 164.9 198 57.6
HanXRQChr16g0519151 Helianthus annuus HOM05D000213 ORTHO05D000426 1.7e-34 150.2 186 62.4
Lsat_1_v5_gn_4_48480 Lactuca sativa HOM05D000213 ORTHO05D000426 1.1e-25 120.9 187 65.8
ECA234G3662 Erigeron canadensis HOM05D000213 ORTHO05D000426 3.8e-23 112.5 170 53.5
Lj1A1175T52 Lonicera japonica HOM05D000213 ORTHO05D000426 1.5e-22 110.5 176 42.0
Dinv32342 Davidia involucrata HOM05D000213 ORTHO05D000426 2.5e-22 109.8 85 63.5
PGSC0003DMG400028469 Solanum tuberosum HOM05D000213 ORTHO05D000426 2.5e-22 109.8 187 36.4
Cc02_g15550 Coffea canephora HOM05D000213 ORTHO05D000426 5.5e-22 108.6 91 58.2
Sopen02g021170 Solanum pennellii HOM05D000213 ORTHO05D000426 2.7e-21 106.3 188 55.9
Nitab4.5_0000437g0130 Nicotiana tabacum HOM05D000213 ORTHO05D000426 6.1e-21 105.1 189 38.6
Nitab4.5_0007471g0010 Nicotiana tabacum HOM05D000213 ORTHO05D000426 8.0e-21 104.8 191 51.3
Solyc02g072190.4 Solanum lycopersicum HOM05D000213 ORTHO05D000426 1.0e-20 104.4 193 55.4
CSS0024614 Camellia sinensis var. sinensis HOM05D000213 ORTHO05D000426 2.3e-20 103.2 188 50.0
GSVIVG01021252001 Vitis vinifera HOM05D000213 ORTHO05D000426 3.0e-20 102.8 188 37.2
Hma1.2p1_0934F.1_g238530 Hydrangea macrophylla HOM05D000213 ORTHO05D000426 4.4e-19 99.0 190 53.2
Actinidia16776 Actinidia chinensis HOM05D000213 ORTHO05D000426 1.7e-18 97.1 86 62.8
TAR189G0003 Trochodendron aralioides HOM05D000213 ORTHO05D000426 3.7e-18 95.9 189 34.4
TAR624G0267 Trochodendron aralioides HOM05D000213 ORTHO05D000426 3.7e-18 95.9 189 34.4
Dinv12756 Davidia involucrata HOM05D000213 ORTHO05D000426 4.8e-18 95.5 187 47.6
TAR626G1584 Trochodendron aralioides HOM05D000213 ORTHO05D000426 6.3e-18 95.1 205 34.6
CAN.G411.54 Capsicum annuum HOM05D000213 ORTHO05D000426 1.1e-17 94.4 189 46.0
vmacro03943 Vaccinium macrocarpon HOM05D000213 ORTHO05D000426 1.1e-17 94.4 89 58.4
Haze_06179 Corylus avellana HOM05D000213 ORTHO05D000426 3.1e-17 92.8 169 37.3
TAR629G0775 Trochodendron aralioides HOM05D000213 ORTHO05D000426 5.4e-17 92.0 89 56.2
Actinidia35599 Actinidia chinensis HOM05D000213 ORTHO05D000426 7.0e-17 91.7 86 60.5
CSS0009850 Camellia sinensis var. sinensis HOM05D000213 ORTHO05D000426 1.2e-16 90.9 188 45.2
Aqoxy4G00251 Aquilegia oxysepala HOM05D000213 ORTHO05D000426 2.7e-16 89.7 188 39.9
Migut.M01011 Erythranthe guttata HOM05D000213 ORTHO05D000426 4.5e-16 89.0 182 61.0
CiPaw.09G072600 Carya illinoinensis HOM05D000213 ORTHO05D000426 5.9e-16 88.6 167 34.7
QL05p049757 Quercus lobata HOM05D000213 ORTHO05D000426 5.9e-16 88.6 172 34.3
Peaxi162Scf00202g00057 Petunia axillaris HOM05D000213 ORTHO05D000426 1.7e-15 87.0 188 54.8
Cfa000650 Carpinus fangiana HOM05D000213 ORTHO05D000426 2.2e-15 86.7 170 38.2
Gorai.011G037500 Gossypium raimondii HOM05D000213 ORTHO05D000426 2.9e-15 86.3 166 35.5
MSTRG.7427 Avicennia marina HOM05D000213 ORTHO05D000426 6.5e-15 85.1 175 54.9
DCAR_005143 Daucus carota HOM05D000213 ORTHO05D000426 6.5e-15 85.1 165 53.9
Gohir.D10G035600 Gossypium hirsutum HOM05D000213 ORTHO05D000426 6.5e-15 85.1 166 33.1
PSO170G0584 Papaver somniferum HOM05D000213 ORTHO05D000426 6.5e-15 85.1 209 41.6
PSO782G1009 Papaver somniferum HOM05D000213 ORTHO05D000426 8.5e-15 84.7 205 45.4
MSTRG.16168 Avicennia marina HOM05D000213 ORTHO05D000426 1.1e-14 84.3 176 56.8
CiPaw.10G061400 Carya illinoinensis HOM05D000213 ORTHO05D000426 1.1e-14 84.3 168 33.3
Duzib192G0201 Durio zibethinus HOM05D000213 ORTHO05D000426 1.1e-14 84.3 166 47.6
HanXRQChr10g0299711 Helianthus annuus HOM05D000213 ORTHO05D000426 1.5e-14 84.0 164 52.4
COL.COLO4_31241 Corchorus olitorius HOM05D000213 ORTHO05D000426 1.9e-14 83.6 166 53.6
Gohir.A10G034900 Gossypium hirsutum HOM05D000213 ORTHO05D000426 1.9e-14 83.6 166 32.5
Cpa.g.sc7.92 Carica papaya HOM05D000213 ORTHO05D000426 2.5e-14 83.2 168 37.5
Thecc.06G166100 Theobroma cacao HOM05D000213 ORTHO05D000426 3.2e-14 82.8 166 47.6
MBI06_g18685_MAGBIO Magnolia biondii HOM05D000213 ORTHO05D000426 5.5e-14 82.0 190 31.6
Nn3g21109 Nelumbo nucifera HOM05D000213 ORTHO05D000426 7.2e-14 81.6 186 33.9
Gohir.A05G153600 Gossypium hirsutum HOM05D000213 ORTHO05D000426 9.4e-14 81.3 166 41.0
Prupe.4G066400 Prunus persica HOM05D000213 ORTHO05D000426 9.4e-14 81.3 172 43.0
Phvul.002G240900 Phaseolus vulgaris HOM05D000213 ORTHO05D000426 1.2e-13 80.9 190 35.3
SalBow8G0158 Salvia bowleyana HOM05D000213 ORTHO05D000426 1.2e-13 80.9 177 41.8
Duzib235G0976 Durio zibethinus HOM05D000213 ORTHO05D000426 1.6e-13 80.5 167 41.9
THA.LOC104820607 Tarenaya hassleriana HOM05D000213 ORTHO05D000426 2.1e-13 80.1 169 36.7
Glyma.08G118200 Glycine max HOM05D000213 ORTHO05D000426 2.7e-13 79.7 186 30.6
Gohir.D05G156300 Gossypium hirsutum HOM05D000213 ORTHO05D000426 2.7e-13 79.7 167 41.9
Gorai.009G160800 Gossypium raimondii HOM05D000213 ORTHO05D000426 2.7e-13 79.7 167 41.3
Oeu039883.1 Olea europaea HOM05D000213 ORTHO05D000426 2.7e-13 79.7 96 44.8
Duzib160G0748 Durio zibethinus HOM05D000213 ORTHO05D000426 8.0e-13 78.2 167 32.3
Glyma.05G160800 Glycine max HOM05D000213 ORTHO05D000426 1.4e-12 77.4 185 30.8
Sabra11G0054900 Salix brachista HOM05D000213 ORTHO05D000426 1.8e-12 77.0 176 35.2
arahy.Tifrunner.gnm1.ann1.7E4BRJ Arachis hypogaea HOM05D000213 ORTHO05D000426 4.0e-12 75.9 188 31.4
Ciclev10016229m.g Citrus clementina HOM05D000213 ORTHO05D000426 4.0e-12 75.9 93 44.1
THA.LOC104814262 Tarenaya hassleriana HOM05D000213 ORTHO05D000426 4.0e-12 75.9 88 47.7
Potri.011G070100 Populus trichocarpa HOM05D000213 ORTHO05D000426 5.2e-12 75.5 168 40.5
Sabra11G0058100 Salix brachista HOM05D000213 ORTHO05D000426 6.8e-12 75.1 176 32.4
CANSAT64G1064 Cannabis sativa HOM05D000213 ORTHO05D000426 8.8e-12 74.7 88 45.5
ClCG03G007470 Citrullus lanatus HOM05D000213 ORTHO05D000426 8.8e-12 74.7 201 32.8
PGR042G3699 Punica granatum HOM05D000213 ORTHO05D000426 8.8e-12 74.7 168 42.3
Atru.chr10.1574 Acer truncatum HOM05D000213 ORTHO05D000426 1.5e-11 73.9 169 41.4
MD05G1295700 Malus domestica HOM05D000213 ORTHO05D000426 1.5e-11 73.9 171 37.4
Rhsim02G0146200 Rhododendron simsii HOM05D000213 ORTHO05D000426 1.5e-11 73.9 86 44.2
TWI09G1630 Tripterygium wilfordii HOM05D000213 ORTHO05D000426 1.5e-11 73.9 171 31.0
CsaV3_1G033110 Cucumis sativus L. HOM05D000213 ORTHO05D000426 2.6e-11 73.2 199 36.2
MD10G1275800 Malus domestica HOM05D000213 ORTHO05D000426 2.6e-11 73.2 177 39.5
Rhsim13G0187900 Rhododendron simsii HOM05D000213 ORTHO05D000426 3.4e-11 72.8 88 50.0
MELO3C002675.2 Cucumis melo HOM05D000213 ORTHO05D000426 5.7e-11 72.0 199 35.2
FAN25G0605 Fragaria x ananassa HOM05D000213 ORTHO05D000426 5.7e-11 72.0 172 32.6
Hma1.2p1_2373F.1_g320830 Hydrangea macrophylla HOM05D000213 ORTHO05D000426 5.7e-11 72.0 164 45.1
VMungo0251G2719 Vigna mungo HOM05D000213 ORTHO05D000426 5.7e-11 72.0 196 32.7
SalBow7G4526 Salvia bowleyana HOM05D000213 ORTHO05D000426 7.5e-11 71.6 83 48.2
Eucgr.E02783 Eucalyptus grandis HOM05D000213 ORTHO05D000426 9.8e-11 71.2 175 33.7
Medtr8g087000 Medicago truncatula HOM05D000213 ORTHO05D000426 9.8e-11 71.2 84 47.6
RcHm_v2.0_Chr5g0011581 Rosa chinensis HOM05D000213 ORTHO05D000426 9.8e-11 71.2 174 29.9
DCAR_027985 Daucus carota HOM05D000213 ORTHO05D000426 2.2e-10 70.1 185 47.6
Sed0018885 Sechium edule HOM05D000213 ORTHO05D000426 2.2e-10 70.1 199 29.6
AT1G29280 Arabidopsis thaliana HOM05D000213 ORTHO05D000426 3.7e-10 69.3 67 50.7
FAN11G2187 Fragaria x ananassa HOM05D000213 ORTHO05D000426 3.7e-10 69.3 178 36.0
Manes.17G058900 Manihot esculenta HOM05D000213 ORTHO05D000426 3.7e-10 69.3 70 48.6
FvH4_3g07360 Fragaria vesca HOM05D000213 ORTHO05D000426 4.9e-10 68.9 172 36.0
FAN16G3340 Fragaria x ananassa HOM05D000213 ORTHO05D000426 8.3e-10 68.2 172 35.5
Potri.004G060900 Populus trichocarpa HOM05D000213 ORTHO05D000426 8.3e-10 68.2 186 33.9
AL1G43070 Arabidopsis lyrata HOM05D000213 ORTHO05D000426 1.1e-09 67.8 67 49.3
AUR62039475 Chenopodium quinoa HOM05D000213 ORTHO05D000426 1.1e-09 67.8 91 44.0
Aa31LG6G6250 Aethionema arabicum HOM05D000213 ORTHO05D000426 1.4e-09 67.4 66 53.0
Sabra04G0040200 Salix brachista HOM05D000213 ORTHO05D000426 1.4e-09 67.4 66 48.5
Carub.0001s2749 Capsella rubella HOM05D000213 ORTHO05D000426 1.8e-09 67.0 70 48.6
Dinv24705 Davidia involucrata HOM05D000213 ORTHO05D000426 1.8e-09 67.0 93 44.1
Thhalv10008510m.g Eutrema salsugineum HOM05D000213 ORTHO05D000426 1.8e-09 67.0 72 47.2
Hma1.2p1_2373F.1_g320820 Hydrangea macrophylla HOM05D000213 ORTHO05D000426 1.8e-09 67.0 60 56.7
EL10Ac8g20562 Beta vulgaris HOM05D000213 ORTHO05D000426 2.4e-09 66.6 87 47.1
CARHR028600 Cardamine hirsuta HOM05D000213 ORTHO05D000426 3.1e-09 66.2 68 48.5
QL08p042333 Quercus lobata HOM05D000213 ORTHO05D000426 3.1e-09 66.2 75 48.0
Sp1g25210 Schrenkiella parvula HOM05D000213 ORTHO05D000426 3.1e-09 66.2 72 47.2
Oeu060167.1 Olea europaea HOM05D000213 ORTHO05D000426 5.4e-09 65.5 176 51.1
SGA_v2.0_scaffold16G07712 Striga asiatica HOM05D000213 ORTHO05D000426 5.4e-09 65.5 180 32.2
A09p37090 Brassica napus HOM05D000213 ORTHO05D000426 7.0e-09 65.1 68 48.5
BraA09t39224Z Brassica rapa HOM05D000213 ORTHO05D000426 7.0e-09 65.1 68 48.5
Lj4g0003872 Lotus japonicus HOM05D000213 ORTHO05D000426 9.2e-09 64.7 189 31.7
Hund00858 Selenicereus undatus HOM05D000213 ORTHO05D000426 9.2e-09 64.7 83 43.4
MSTRG.13231 Avicennia marina HOM05D000213 ORTHO05D000426 1.2e-08 64.3 165 48.5
Manes.16G043080 Manihot esculenta HOM05D000213 ORTHO05D000426 1.2e-08 64.3 69 47.8
SGA_v2.0_scaffold1G00078 Striga asiatica HOM05D000213 ORTHO05D000426 1.2e-08 64.3 168 34.5
AUR62041828 Chenopodium quinoa HOM05D000213 ORTHO05D000426 1.6e-08 63.9 91 42.9
Aqoxy1G01997 Aquilegia oxysepala HOM05D000213 ORTHO05D000426 2.0e-08 63.5 85 45.9
C05p28010 Brassica napus HOM05D000213 ORTHO05D000426 2.7e-08 63.2 72 45.8
BolC5t31528H Brassica oleracea HOM05D000213 ORTHO05D000426 2.7e-08 63.2 72 45.8
PGSC0003DMG400020432 Solanum tuberosum HOM05D000213 ORTHO05D000426 3.5e-08 62.8 90 41.1
vmacro16042 Vaccinium macrocarpon HOM05D000213 ORTHO05D000426 4.5e-08 62.4 71 47.9
Gohir.A06G133100 Gossypium hirsutum HOM05D000213 ORTHO05D000426 5.9e-08 62.0 95 36.8
TWI59G1084 Tripterygium wilfordii HOM05D000213 ORTHO05D000426 5.9e-08 62.0 63 50.8
Lj3g0010596 Lotus japonicus HOM05D000213 ORTHO05D000426 7.7e-08 61.6 64 53.1
Sed0008537 Sechium edule HOM05D000213 ORTHO05D000426 7.7e-08 61.6 68 48.5
Gohir.D06G138500 Gossypium hirsutum HOM05D000213 ORTHO05D000426 1.0e-07 61.2 64 45.3
Gorai.010G161000 Gossypium raimondii HOM05D000213 ORTHO05D000426 1.0e-07 61.2 96 35.4
Solyc07g055280.4 Solanum lycopersicum HOM05D000213 ORTHO05D000426 1.0e-07 61.2 89 39.3
Sopen07g026940 Solanum pennellii HOM05D000213 ORTHO05D000426 1.0e-07 61.2 89 39.3
Ca_17899_v3 Cicer arietinum L. HOM05D000213 ORTHO05D000426 1.7e-07 60.5 63 54.0
SHI21851 Sapria himalayana HOM05D000213 ORTHO05D000426 1.7e-07 60.5 63 47.6
CAN.G1360.13 Capsicum annuum HOM05D000213 ORTHO05D000426 2.3e-07 60.1 93 37.6
Lalb_Chr12g0204961 Lupinus albus HOM05D000213 ORTHO05D000426 2.3e-07 60.1 91 38.5
Glyma.12G212300 Glycine max HOM05D000213 ORTHO05D000426 3.8e-07 59.3 64 51.6
Nitab4.5_0000249g0070 Nicotiana tabacum HOM05D000213 ORTHO05D000426 5.0e-07 58.9 89 38.2
Nitab4.5_0000628g0140 Nicotiana tabacum HOM05D000213 ORTHO05D000426 5.0e-07 58.9 89 38.2
Peaxi162Scf00469g00624 Petunia axillaris HOM05D000213 ORTHO05D000426 8.6e-07 58.2 83 38.6
Cc05_g08580 Coffea canephora HOM05D000213 ORTHO05D000426 1.1e-06 57.8 72 43.1
Psat7g069920 Pisum sativum HOM05D000213 ORTHO05D000426 1.1e-06 57.8 63 47.6
Glyma.13G289400 Glycine max HOM05D000213 ORTHO05D000426 1.9e-06 57.0 64 50.0
Lalb_Chr07g0186321 Lupinus albus HOM05D000213 ORTHO05D000426 1.9e-06 57.0 186 34.4
Medtr2g083870 Medicago truncatula HOM05D000213 ORTHO05D000426 1.9e-06 57.0 67 49.3
Psat5g250760 Pisum sativum HOM05D000213 ORTHO05D000426 1.9e-06 57.0 64 50.0
Ca_01721_v3 Cicer arietinum L. HOM05D000213 ORTHO05D000426 4.3e-06 55.8 64 48.4
ATR0012G033 Amborella trichopoda HOM05D000213 ORTHO05D000426 7.3e-06 55.1 190 26.3
BcaB07g32516 Brassica carinata HOM05D000213 ORTHO05D000426 7.3e-06 55.1 57 49.1
Sc17g0005650 Simmondsia chinensis HOM05D000213 ORTHO05D000426 7.3e-06 55.1 199 31.2
arahy.Tifrunner.gnm1.ann1.JRMF73 Arachis hypogaea HOM05D000213 ORTHO05D000426 9.5e-06 54.7 64 48.4


User provided reference genes

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