Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G1157 Erigeron canadensis HOM05D006935 ORTHO05D008944 4.4e-178 627.9 320 100.0
Lsat_1_v5_gn_5_17180 Lactuca sativa HOM05D006935 ORTHO05D008944 5.1e-142 508.1 320 82.8
HanXRQChr16g0517271 Helianthus annuus HOM05D006935 ORTHO05D008944 6.4e-137 491.1 318 81.1
MSTRG.11442 Avicennia marina HOM05D006935 ORTHO05D008944 1.6e-119 433.3 320 70.9
PGSC0003DMG400024494 Solanum tuberosum HOM05D006935 ORTHO05D008944 1.0e-118 430.6 286 76.9
CSS0041391 Camellia sinensis var. sinensis HOM05D006935 ORTHO05D008944 1.3e-118 430.3 316 72.2
SGA_v2.0_scaffold90G27953 Striga asiatica HOM05D006935 ORTHO05D008944 5.1e-118 428.3 293 75.8
vmacro19376 Vaccinium macrocarpon HOM05D006935 ORTHO05D008944 2.5e-117 426.0 319 70.5
Sopen03g033350 Solanum pennellii HOM05D006935 ORTHO05D008944 3.3e-117 425.6 314 71.7
Actinidia19311 Actinidia chinensis HOM05D006935 ORTHO05D008944 4.3e-117 425.2 280 78.6
Eucgr.B00368 Eucalyptus grandis HOM05D006935 ORTHO05D008944 1.3e-116 423.7 285 77.2
CiPaw.11G027700 Carya illinoinensis HOM05D006935 ORTHO05D008944 2.1e-116 422.9 282 76.6
Solyc03g114250.4 Solanum lycopersicum HOM05D006935 ORTHO05D008944 2.1e-116 422.9 309 72.2
Rhsim08G0171100 Rhododendron simsii HOM05D006935 ORTHO05D008944 2.8e-116 422.5 316 71.5
Haze_07457 Corylus avellana HOM05D006935 ORTHO05D008944 6.2e-116 421.4 291 74.6
Nn4g22789 Nelumbo nucifera HOM05D006935 ORTHO05D008944 1.1e-115 420.6 289 74.0
Nitab4.5_0005862g0020 Nicotiana tabacum HOM05D006935 ORTHO05D008944 4.0e-115 418.7 322 68.9
Thecc.03G010500 Theobroma cacao HOM05D006935 ORTHO05D008944 4.0e-115 418.7 317 71.0
Cc04_g13740 Coffea canephora HOM05D006935 ORTHO05D008944 1.5e-114 416.8 328 68.3
Migut.I00022 Erythranthe guttata HOM05D006935 ORTHO05D008944 2.6e-114 416.0 325 68.9
GSVIVG01007766001 Vitis vinifera HOM05D006935 ORTHO05D008944 4.5e-114 415.2 323 67.5
Gorai.007G001900 Gossypium raimondii HOM05D006935 ORTHO05D008944 7.6e-114 414.5 279 75.3
Gohir.D11G001000 Gossypium hirsutum HOM05D006935 ORTHO05D008944 1.7e-113 413.3 277 75.8
COL.COLO4_04599 Corchorus olitorius HOM05D006935 ORTHO05D008944 3.8e-113 412.1 282 74.8
FvH4_5g05200 Fragaria vesca HOM05D006935 ORTHO05D008944 3.8e-113 412.1 281 75.4
Atru.chr9.2451 Acer truncatum HOM05D006935 ORTHO05D008944 6.4e-113 411.4 319 67.1
Gohir.A11G001400 Gossypium hirsutum HOM05D006935 ORTHO05D008944 1.9e-112 409.8 277 75.1
MD14G1182500 Malus domestica HOM05D006935 ORTHO05D008944 1.9e-112 409.8 280 75.4
Duzib068G1137 Durio zibethinus HOM05D006935 ORTHO05D008944 2.4e-112 409.5 324 67.9
Cpa.g.sc124.48 Carica papaya HOM05D006935 ORTHO05D008944 3.2e-112 409.1 302 71.2
RcHm_v2.0_Chr7g0193711 Rosa chinensis HOM05D006935 ORTHO05D008944 9.3e-112 407.5 280 74.6
Ciclev10021410m.g Citrus clementina HOM05D006935 ORTHO05D008944 1.2e-111 407.1 284 72.2
QL10p011920 Quercus lobata HOM05D006935 ORTHO05D008944 2.7e-111 406.0 318 68.9
Sc12g0005390 Simmondsia chinensis HOM05D006935 ORTHO05D008944 3.5e-111 405.6 291 71.5
Sabra15G0098700 Salix brachista HOM05D006935 ORTHO05D008944 4.6e-111 405.2 257 78.2
Nitab4.5_0000852g0050 Nicotiana tabacum HOM05D006935 ORTHO05D008944 6.0e-111 404.8 280 74.6
Aqoxy3G02966 Aquilegia oxysepala HOM05D006935 ORTHO05D008944 5.1e-110 401.7 298 70.1
CANSAT80G0279 Cannabis sativa HOM05D006935 ORTHO05D008944 1.1e-109 400.6 244 81.6
PGR083G2867 Punica granatum HOM05D006935 ORTHO05D008944 1.1e-109 400.6 283 72.4
Potri.015G074700 Populus trichocarpa HOM05D006935 ORTHO05D008944 1.5e-109 400.2 257 77.0
Manes.06G104000 Manihot esculenta HOM05D006935 ORTHO05D008944 1.9e-109 399.8 271 74.9
CsaV3_1G008420 Cucumis sativus L. HOM05D006935 ORTHO05D008944 4.3e-109 398.7 283 71.7
Lalb_Chr07g0182691 Lupinus albus HOM05D006935 ORTHO05D008944 9.6e-109 397.5 300 71.0
Cfa019105 Carpinus fangiana HOM05D006935 ORTHO05D004872 1.6e-108 396.7 289 73.4
SalBow5G1860 Salvia bowleyana HOM05D006935 ORTHO05D008944 1.6e-108 396.7 281 72.6
TWI81G0925 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 3.7e-108 395.6 279 73.1
TWI81G0947 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 3.7e-108 395.6 279 73.1
AL8G39840 Arabidopsis lyrata HOM05D006935 ORTHO05D008944 6.2e-108 394.8 294 68.7
Carub.0008s2355 Capsella rubella HOM05D006935 ORTHO05D008944 2.4e-107 392.9 261 74.3
BcaC01g02525 Brassica carinata HOM05D006935 ORTHO05D008944 4.0e-107 392.1 234 81.2
C03p63900 Brassica napus HOM05D006935 ORTHO05D008944 4.0e-107 392.1 234 81.2
BolC3t18645H Brassica oleracea HOM05D006935 ORTHO05D008944 4.0e-107 392.1 234 81.2
THA.LOC104798977 Tarenaya hassleriana HOM05D006935 ORTHO05D008944 4.0e-107 392.1 242 78.9
Sp2g25990 Schrenkiella parvula HOM05D006935 ORTHO05D008944 5.3e-107 391.7 234 79.9
Thhalv10004703m.g Eutrema salsugineum HOM05D006935 ORTHO05D008944 1.2e-106 390.6 236 80.1
unitig_749.g13472 Utricularia gibba HOM05D006935 ORTHO05D008944 1.5e-106 390.2 311 67.2
BcaB02g09696 Brassica carinata HOM05D006935 ORTHO05D008944 2.0e-106 389.8 234 79.9
AT5G62840 Arabidopsis thaliana HOM05D006935 ORTHO05D008944 2.6e-106 389.4 296 67.2
Aa31LG11G860 Aethionema arabicum HOM05D006935 ORTHO05D008944 4.5e-106 388.7 236 78.4
VMungo1215G2532 Vigna mungo HOM05D006935 ORTHO05D008944 5.8e-106 388.3 248 78.2
BraA06t25905Z Brassica rapa HOM05D006935 ORTHO05D008944 7.6e-106 387.9 234 79.5
A06p29590 Brassica napus HOM05D006935 ORTHO05D008944 1.0e-105 387.5 234 79.1
FAN04G2667 Fragaria x ananassa HOM05D006935 ORTHO05D008944 1.0e-105 387.5 269 75.1
CARHR276620 Cardamine hirsuta HOM05D006935 ORTHO05D008944 1.7e-105 386.7 236 77.5
Lj4g0026943 Lotus japonicus HOM05D006935 ORTHO05D008944 1.7e-105 386.7 270 73.3
TAR622G0425 Trochodendron aralioides HOM05D006935 ORTHO05D008944 2.2e-105 386.3 230 83.0
MBI16_g05651_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 2.9e-105 386.0 230 81.7
FAN18G4193 Fragaria x ananassa HOM05D006935 ORTHO05D004872 4.9e-105 385.2 270 74.1
TPR.G37522 Trifolium pratense HOM05D006935 ORTHO05D008944 4.9e-105 385.2 279 70.3
Glyma.05G036900 Glycine max HOM05D006935 ORTHO05D008944 6.5e-105 384.8 248 77.8
Oeu016368.1 Olea europaea HOM05D006935 ORTHO05D008944 6.5e-105 384.8 320 65.6
Hund09430 Selenicereus undatus HOM05D006935 ORTHO05D004872 1.1e-104 384.0 270 71.1
Medtr4g106970 Medicago truncatula HOM05D006935 ORTHO05D008944 1.9e-104 383.3 287 67.9
ClCG01G013080 Citrullus lanatus HOM05D006935 ORTHO05D008944 2.5e-104 382.9 280 70.7
Phvul.003G199600 Phaseolus vulgaris HOM05D006935 ORTHO05D008944 2.5e-104 382.9 248 77.0
Ah.02g110460 Amaranthus hybridus HOM05D006935 ORTHO05D008944 3.2e-104 382.5 240 76.2
MELO3C002259.2 Cucumis melo HOM05D006935 ORTHO05D008944 9.3e-104 380.9 280 70.7
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 4.6e-103 378.6 237 76.8
MBI16_g32800_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 6.0e-103 378.3 320 64.1
Peaxi162Scf00017g02821 Petunia axillaris HOM05D006935 ORTHO05D008944 5.1e-102 375.2 249 77.9
Dinv09149 Davidia involucrata HOM05D006935 ORTHO05D008944 8.7e-102 374.4 275 72.7
EL10Ac5g10748 Beta vulgaris HOM05D006935 ORTHO05D008944 4.3e-101 372.1 228 78.9
PSO302G0172 Papaver somniferum HOM05D006935 ORTHO05D008944 1.3e-100 370.5 297 63.6
AUR62008221 Chenopodium quinoa HOM05D006935 ORTHO05D008944 1.6e-100 370.2 239 77.0
CAN.G781.17 Capsicum annuum HOM05D006935 ORTHO05D008944 4.8e-100 368.6 270 73.0
Zm00001eb359580 Zea mays HOM05D006935 ORTHO05D008944 8.2e-100 367.9 242 74.8
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 2.9e-97 359.4 269 68.8
SEGI_12501 Sequoiadendron giganteum HOM05D006935 ORTHO05D008944 1.6e-95 353.6 238 71.8
HPP92_024712 Vanilla planifolia HOM05D006935 ORTHO05D008944 4.6e-95 352.1 303 60.7
AUR62030975 Chenopodium quinoa HOM05D006935 ORTHO05D008944 9.7e-93 344.4 232 73.3
Pp3c16_7000 Physcomitrium patens HOM05D006935 ORTHO05D008944 1.4e-88 330.5 252 64.7
Psat4g057680 Pisum sativum HOM05D006935 ORTHO05D008944 2.7e-87 326.2 247 68.8
Ca_21910_v3 Cicer arietinum L. HOM05D006935 ORTHO05D008944 2.3e-86 323.2 237 70.5
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 5.3e-83 312.0 274 60.6
Peaxi162Scf00017g02830 Petunia axillaris HOM05D006935 ORTHO05D008944 4.5e-82 308.9 209 76.6
ATR0730G238 Amborella trichopoda HOM05D006935 ORTHO05D008944 5.2e-78 295.4 339 49.6
FAN08G3443 Fragaria x ananassa HOM05D006935 ORTHO05D004872 2.8e-76 289.7 216 70.8
AagrBONN_evm.TU.Sc2ySwM_117.38 Anthoceros agrestis HOM05D006935 ORTHO05D008944 5.0e-73 278.9 201 69.2
SMO141G0200 Selaginella moellendorffii HOM05D006935 ORTHO05D008944 8.5e-73 278.1 182 73.1
EL10Ac5g10761 Beta vulgaris HOM05D006935 ORTHO05D008944 2.3e-70 270.0 219 65.3
Prupe.5G175000 Prunus persica HOM05D006935 ORTHO05D008944 8.3e-60 235.0 320 46.9
Hma1.2p1_0176F.1_g077560 Hydrangea macrophylla HOM05D006935 ORTHO05D008944 1.4e-59 234.2 191 64.9
Sed0005822 Sechium edule HOM05D006935 ORTHO05D008944 1.2e-58 231.1 168 72.0
Cre06.g272300 Chlamydomonas reinhardtii HOM05D006935 ORTHO05D008944 1.4e-54 217.6 241 49.0
Actinidia20183 Actinidia chinensis HOM05D006935 ORTHO05D008944 1.1e-48 198.0 122 83.6
arahy.Tifrunner.gnm1.ann1.0F4FSZ Arachis hypogaea HOM05D006935 ORTHO05D008944 2.8e-47 193.4 113 82.3
arahy.Tifrunner.gnm1.ann1.209TGD Arachis hypogaea HOM05D006935 ORTHO05D008944 2.3e-46 190.3 115 79.1
Lj5C123T7 Lonicera japonica HOM05D006935 ORTHO05D008944 8.0e-39 165.2 107 76.6
Psat4g057640 Pisum sativum HOM05D006935 ORTHO05D008944 8.9e-38 161.8 218 44.5
Lj5C123T8 Lonicera japonica HOM05D006935 ORTHO05D008944 6.2e-31 139.0 77 85.7
MD06G1175700 Malus domestica HOM05D006935 ORTHO05D008944 2.3e-30 137.1 221 42.1
PRCOL_00001554 Prasinoderma coloniale HOM05D006935 ORTHO05D008944 4.7e-23 112.8 210 37.1
Actinidia01759 Actinidia chinensis HOM05D006935 ORTHO05D008944 4.6e-18 96.3 63 79.4
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 8.7e-17 92.0 227 32.6
Hund09427 Selenicereus undatus HOM05D006935 ORTHO05D008944 3.0e-09 67.0 43 74.4
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 5.6e-08 62.8 205 30.7
Nn4g24775 Nelumbo nucifera HOM05D006935 ORTHO05D008944 4.0e-06 56.6 33 72.7
DCAR_006105 Daucus carota HOM05D006935 ORTHO05D008944 9.0e-06 55.5 32 81.2


User provided reference genes

Program Settings