Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 2209.1 1092 100.0
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1937.5 1079 88.2
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1919.8 1078 87.3
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1902.9 1084 86.9
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1747.3 1101 78.3
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1726.5 1081 78.3
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1686.0 1081 76.6
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1685.2 1087 76.3
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1673.3 1081 75.7
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1672.9 1081 75.8
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1672.9 1089 75.7
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1671.8 1081 75.6
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1669.8 1076 76.0
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1669.1 1075 76.0
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1664.8 1080 75.5
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1661.7 1081 75.3
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1659.4 1077 75.7
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1657.9 1077 75.6
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1657.1 1076 75.7
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1653.6 1077 75.5
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1650.6 1115 73.3
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1647.9 1090 74.8
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1647.5 1090 74.2
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1641.7 1089 74.4
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1629.0 1088 73.2
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1627.5 1089 74.1
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1623.6 1085 72.9
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1623.6 1092 73.2
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1621.3 1088 73.8
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1619.4 1095 73.3
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1617.1 1086 73.5
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1614.7 1082 72.9
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1614.7 1079 73.4
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1614.7 1104 72.9
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1613.2 1087 73.2
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1612.4 1090 72.5
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1607.0 1101 73.7
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1606.3 1078 73.2
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1603.6 1085 72.1
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1600.9 1084 72.1
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1596.6 1087 72.7
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1596.3 1086 71.9
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1594.7 1090 72.4
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1592.4 1085 72.9
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1591.6 1085 72.4
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1588.9 1078 72.6
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1586.6 1076 73.5
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1585.5 1085 72.0
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1585.1 1078 72.6
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1582.4 1080 72.1
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1580.1 1086 71.9
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1579.7 1081 71.4
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1579.3 1087 72.9
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1579.3 1091 72.0
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1578.1 1090 71.0
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1577.8 1073 72.5
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1575.8 1089 70.7
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1575.5 1078 71.5
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1572.4 1078 72.7
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1570.8 1089 70.6
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1567.0 1146 68.3
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1566.2 1075 71.5
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1565.8 1103 69.4
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1565.8 1089 70.3
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1565.4 1089 70.5
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1563.1 1086 69.9
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1559.3 1087 70.5
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1558.9 1086 71.1
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1557.0 996 76.4
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1555.0 1087 70.4
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1552.7 1086 70.6
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1552.0 1079 69.7
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1551.6 1168 67.1
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1548.9 1087 70.3
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1545.0 1086 70.4
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1543.1 1167 67.3
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1535.4 1079 70.3
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1534.2 1087 70.1
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1532.3 1088 69.9
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1529.6 1084 69.5
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1529.6 1084 69.5
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1528.8 1096 69.8
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1523.8 1079 68.7
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1514.6 1080 68.1
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1511.5 1076 70.5
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1508.0 1076 69.4
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1508.0 1076 69.6
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1506.9 1076 68.9
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1506.5 1076 68.9
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1504.6 1085 67.6
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1502.6 1077 69.3
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1502.6 1086 68.3
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1501.9 1077 69.3
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1501.5 1077 69.2
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1500.7 1073 69.2
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1500.0 1077 69.2
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1500.0 1077 69.2
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1498.0 1076 69.0
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1496.1 1077 68.9
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1495.7 1070 69.0
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1492.6 1017 72.4
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1481.5 1051 68.6
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1479.2 1107 66.5
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1461.4 1076 65.5
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1458.7 1087 67.4
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1446.0 1103 64.6
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1427.5 1115 62.6
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1426.4 1000 71.8
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1417.9 982 71.9
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1385.2 1015 69.5
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1344.7 1081 64.6
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1211.1 793 75.0
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1182.9 1076 54.1
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1172.9 693 83.3
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1162.5 1118 52.1
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1161.0 1081 53.6
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1151.0 1081 53.1
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1143.3 751 75.2
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1129.4 717 77.5
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1121.3 675 81.2
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1100.5 1083 50.8
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 1.9e-289 999.6 835 59.2
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 2.6e-270 936.0 819 59.2
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 9.1e-260 901.0 615 73.8
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 2.1e-256 889.8 951 48.9
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 7.5e-246 854.7 637 69.5
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 3.3e-241 839.3 501 81.2
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 6.4e-221 771.9 631 60.9
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 6.0e-211 738.8 967 45.7
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 1.5e-182 644.4 601 56.7
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 6.3e-168 595.9 429 69.9
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 1.2e-155 555.1 307 86.3
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.5e-132 477.6 313 73.8
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 6.4e-128 463.0 381 60.6
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 1.3e-72 279.3 289 50.2
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.2e-64 251.9 205 60.5
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 8.5e-64 250.0 136 82.4
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 1.6e-62 245.7 241 51.9
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 5.0e-48 197.6 140 65.7
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 7.5e-36 157.1 184 47.8
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 3.7e-35 154.8 133 59.4
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 8.6e-32 143.7 156 50.0
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 6.1e-30 137.5 73 86.3
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 1.5e-28 132.9 105 58.1
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 8.3e-27 127.1 97 66.0
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 1.6e-22 112.8 88 64.8
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 3.1e-13 82.0 49 71.4
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 4.0e-13 81.6 47 80.9
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 9.8e-12 77.0 147 36.1
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 3.5e-09 68.6 33 93.9
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 8.6e-08 63.9 39 76.9
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 2.1e-06 59.3 67 43.3


User provided reference genes

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