Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 6.3e-175 617.5 342 100.0
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 1.2e-72 277.7 306 62.1
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 2.2e-63 246.9 284 56.7
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 1.6e-48 197.6 297 45.8
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 1.0e-47 194.9 318 43.1
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.0e-44 183.0 325 39.7
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 1.2e-40 171.4 334 43.7
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 6.0e-40 169.1 287 42.2
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 7.8e-40 168.7 331 40.8
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 1.0e-39 168.3 334 43.4
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 1.7e-39 167.5 308 43.5
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 2.3e-39 167.2 331 39.3
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 8.6e-39 165.2 283 44.9
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 1.9e-38 164.1 318 40.3
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 2.5e-38 163.7 318 40.3
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.5e-38 163.7 348 40.2
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 3.3e-38 163.3 314 42.4
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 4.3e-38 162.9 349 37.8
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 5.6e-38 162.5 339 43.4
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 9.5e-38 161.8 311 38.3
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.2e-37 161.4 295 42.7
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 3.6e-37 159.8 353 38.5
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 4.7e-37 159.5 305 41.0
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 4.7e-37 159.5 297 40.7
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 4.7e-37 159.5 321 43.0
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 6.2e-37 159.1 312 39.1
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 6.2e-37 159.1 315 38.7
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 6.2e-37 159.1 326 43.6
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 1.1e-36 158.3 279 43.0
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 1.4e-36 157.9 294 44.6
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 1.4e-36 157.9 311 44.7
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 1.4e-36 157.9 292 43.8
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 2.3e-36 157.1 311 42.1
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 4.0e-36 156.4 318 40.3
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 5.2e-36 156.0 320 40.6
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 5.2e-36 156.0 320 40.6
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 5.2e-36 156.0 320 40.6
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 5.2e-36 156.0 322 41.3
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 6.8e-36 155.6 329 38.6
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 1.2e-35 154.8 328 36.6
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 1.5e-35 154.5 323 43.3
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 3.4e-35 153.3 315 39.0
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 4.4e-35 152.9 264 42.4
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 4.4e-35 152.9 327 41.3
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 5.8e-35 152.5 324 38.0
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 7.5e-35 152.1 295 41.4
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 7.5e-35 152.1 340 40.6
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 7.5e-35 152.1 331 42.6
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 9.8e-35 151.8 321 37.1
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 1.3e-34 151.4 340 40.3
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 1.3e-34 151.4 291 40.5
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 2.2e-34 150.6 310 39.4
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 2.9e-34 150.2 324 46.0
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 3.7e-34 149.8 332 36.7
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 3.7e-34 149.8 312 40.7
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.7e-34 149.8 352 35.2
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 6.4e-34 149.1 321 36.8
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 1.4e-33 147.9 322 44.1
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 1.4e-33 147.9 311 39.5
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 1.9e-33 147.5 247 43.3
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 4.1e-33 146.4 317 36.6
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 5.4e-33 146.0 319 39.8
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 9.2e-33 145.2 329 42.2
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 9.2e-33 145.2 337 40.1
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 9.2e-33 145.2 193 52.8
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 1.2e-32 144.8 323 43.7
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.6e-32 144.4 343 39.4
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 2.1e-32 144.1 307 39.1
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 4.6e-32 142.9 338 35.2
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 6.0e-32 142.5 329 38.0
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 6.0e-32 142.5 316 40.2
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 6.0e-32 142.5 320 40.0
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 7.8e-32 142.1 322 40.7
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 1.0e-31 141.7 348 38.5
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 1.3e-31 141.4 259 39.0
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.7e-31 141.0 307 40.1
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 3.9e-31 139.8 307 40.4
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 5.1e-31 139.4 300 38.7
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 6.6e-31 139.0 291 47.4
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 8.6e-31 138.7 305 45.2
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 8.6e-31 138.7 326 41.7
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 8.6e-31 138.7 309 43.0
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 1.5e-30 137.9 330 37.6
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 1.9e-30 137.5 232 40.5
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 2.5e-30 137.1 340 37.9
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 5.6e-30 136.0 321 42.1
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 1.6e-29 134.4 330 37.3
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 2.1e-29 134.0 324 40.7
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 2.8e-29 133.7 320 35.6
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 8.1e-29 132.1 319 35.1
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 8.1e-29 132.1 336 37.5
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 1.1e-28 131.7 180 47.8
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 1.4e-28 131.3 283 39.9
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.8e-28 131.0 342 37.4
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.3e-28 130.6 333 41.7
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 2.3e-28 130.6 287 43.6
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 2.3e-28 130.6 327 38.2
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 4.0e-28 129.8 370 35.4
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 4.0e-28 129.8 287 36.6
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 5.2e-28 129.4 335 34.6
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 6.8e-28 129.0 354 33.3
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 6.8e-28 129.0 312 33.7
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 1.2e-27 128.3 317 37.9
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 1.5e-27 127.9 380 35.3
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 2.0e-27 127.5 292 38.4
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 2.0e-27 127.5 283 40.6
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.6e-27 127.1 283 40.6
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 4.4e-27 126.3 334 41.0
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 4.4e-27 126.3 310 33.5
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 7.5e-27 125.6 285 41.4
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 4.9e-26 122.9 323 34.4
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 1.1e-25 121.7 310 33.2
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 2.4e-25 120.6 331 39.3
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 3.2e-25 120.2 209 42.6
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 1.6e-24 117.9 277 36.1
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 2.1e-24 117.5 156 48.7
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 4.6e-24 116.3 318 40.9
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 4.6e-24 116.3 347 34.6
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.6e-24 116.3 154 43.5
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 4.6e-24 116.3 333 38.7
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 6.0e-24 115.9 253 41.9
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 7.8e-24 115.5 374 35.8
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 1.7e-23 114.4 245 39.6
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 5.1e-23 112.8 225 40.9
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 8.6e-23 112.1 304 33.9
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 1.1e-22 111.7 327 36.7
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.5e-22 111.3 342 33.6
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 1.5e-22 111.3 276 35.9
ECA240G3734 Erigeron canadensis HOM05D000049 ORTHO05D001680 2.5e-22 110.5 68 86.8
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 3.3e-22 110.2 324 32.7
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 4.3e-22 109.8 319 36.4
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 4.3e-22 109.8 143 46.9
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 4.3e-22 109.8 322 37.9
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 7.3e-22 109.0 292 33.9
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 6.2e-21 105.9 143 43.4
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 6.2e-21 105.9 332 35.8
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 1.1e-20 105.1 317 30.9
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.2e-18 97.4 213 46.5
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 1.9e-17 94.4 176 39.8
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 4.2e-17 93.2 314 29.9
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 5.4e-17 92.8 344 31.7
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.2e-16 91.7 241 34.4
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 1.6e-16 91.3 338 31.7
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.6e-16 91.3 338 37.3
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 1.6e-16 91.3 182 37.9
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.5e-14 84.7 339 36.6
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 3.3e-14 83.6 168 38.7
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.2e-13 81.6 112 42.0
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 1.2e-13 81.6 191 33.0
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 1.6e-13 81.3 297 32.3
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.8e-13 80.5 291 38.5
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 3.6e-13 80.1 340 32.4
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.4e-12 78.2 258 30.6
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 4.0e-12 76.6 338 30.8
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 2.1e-08 64.3 83 42.2
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 7.8e-08 62.4 192 38.5


User provided reference genes

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