Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 4.3e-267 924.1 470 100.0
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 1.9e-209 732.6 476 77.3
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 2.9e-194 682.2 474 73.0
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 5.3e-156 555.1 482 60.4
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 7.2e-153 544.7 485 57.9
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 5.7e-150 535.0 487 56.7
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 5.7e-150 535.0 487 56.9
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 1.3e-146 523.9 484 55.8
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 3.2e-145 519.2 482 55.4
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 3.0e-143 512.7 485 55.5
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 1.5e-142 510.4 485 55.3
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 4.4e-142 508.8 484 54.1
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 2.2e-141 506.5 476 55.9
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 1.1e-140 504.2 483 54.9
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 5.3e-140 501.9 474 55.7
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 1.2e-139 500.7 475 55.8
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 3.5e-139 499.2 478 55.2
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 3.5e-139 499.2 481 53.6
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 3.5e-139 499.2 484 53.1
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 5.9e-139 498.4 484 53.1
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 2.9e-138 496.1 483 54.0
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 1.1e-137 494.2 476 54.0
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 3.2e-137 492.7 480 53.8
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 8.0e-136 488.0 478 53.8
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 3.9e-135 485.7 482 53.9
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 3.9e-135 485.7 481 51.8
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 6.7e-135 485.0 484 52.7
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 3.3e-134 482.6 481 52.2
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 4.4e-134 482.3 487 52.2
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 4.4e-134 482.3 485 51.8
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 1.3e-133 480.7 486 52.1
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 2.2e-133 479.9 483 52.6
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 1.4e-132 477.2 485 52.8
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 1.8e-132 476.9 484 51.4
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 2.4e-132 476.5 483 52.4
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 4.1e-132 475.7 487 51.1
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 4.1e-132 475.7 484 51.2
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.2e-131 474.2 483 51.6
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.6e-131 473.8 470 52.1
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.0e-131 473.4 483 51.3
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 2.0e-131 473.4 482 51.0
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 7.7e-131 471.5 483 51.1
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 1.0e-130 471.1 485 50.9
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 1.0e-130 471.1 483 51.3
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 2.2e-130 469.9 485 53.0
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 2.9e-130 469.5 482 50.6
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.9e-130 469.5 482 50.6
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 5.0e-130 468.8 482 51.9
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 5.0e-130 468.8 472 52.8
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.1e-129 467.6 483 50.7
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 1.5e-129 467.2 482 50.6
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.9e-129 466.8 482 50.0
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 1.9e-129 466.8 482 50.0
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 2.5e-129 466.5 480 51.7
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 3.2e-129 466.1 482 50.6
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 5.5e-129 465.3 477 52.0
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 9.4e-129 464.5 481 50.5
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 2.7e-128 463.0 483 50.7
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.7e-128 463.0 481 50.5
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 6.1e-128 461.8 481 50.3
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.0e-127 461.1 470 50.4
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 1.4e-127 460.7 485 50.3
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 1.8e-127 460.3 481 50.5
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 1.8e-127 460.3 477 50.5
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 3.0e-127 459.5 482 50.0
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 4.0e-127 459.1 476 50.2
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 5.2e-127 458.8 472 49.6
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 5.2e-127 458.8 478 50.8
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.5e-126 457.2 482 49.8
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 2.0e-126 456.8 483 49.7
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 4.8e-125 452.2 521 47.6
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 8.3e-125 451.4 478 50.0
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 1.2e-123 447.6 487 49.3
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 1.2e-123 447.6 487 49.3
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 4.5e-123 445.7 482 48.3
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 5.0e-122 442.2 488 49.0
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 6.5e-122 441.8 481 48.4
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 6.5e-122 441.8 482 48.3
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 2.5e-121 439.9 480 48.5
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 1.2e-120 437.6 478 48.3
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 1.2e-120 437.6 471 49.9
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 2.7e-120 436.4 488 49.6
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 1.0e-119 434.5 473 49.7
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 1.0e-119 434.5 371 59.0
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 1.0e-119 434.5 481 48.4
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 2.3e-119 433.3 485 47.0
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 3.0e-119 433.0 475 47.8
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 8.8e-119 431.4 473 49.5
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 1.2e-118 431.0 477 47.4
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 2.0e-118 430.3 487 48.3
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 2.6e-118 429.9 473 49.5
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 3.4e-118 429.5 491 47.0
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 7.5e-118 428.3 476 49.2
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 9.8e-118 427.9 484 47.5
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 3.7e-117 426.0 473 48.8
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 4.8e-117 425.6 476 47.7
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 4.8e-117 425.6 480 48.3
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 2.4e-116 423.3 488 48.8
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 2.7e-115 419.9 483 47.6
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 3.5e-115 419.5 420 51.2
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 1.0e-114 417.9 483 47.8
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 2.1e-112 410.2 481 48.2
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 4.4e-110 402.5 370 54.6
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 2.8e-109 399.8 476 45.6
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 7.8e-107 391.7 385 52.7
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 3.3e-105 386.3 476 45.2
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 4.4e-102 375.9 463 46.2
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.5e-97 360.9 472 44.9
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 2.4e-92 343.6 522 38.3
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 2.7e-91 340.1 484 38.4
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 3.5e-91 339.7 431 43.9
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 4.3e-89 332.8 462 40.5
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 2.8e-88 330.1 458 43.0
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 1.2e-86 324.7 365 47.7
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 2.7e-83 313.5 285 55.4
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 1.0e-82 311.6 400 43.0
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 1.3e-82 311.2 285 54.7
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 7.3e-81 305.4 327 50.5
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 9.6e-81 305.1 406 44.3
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 2.1e-80 303.9 483 40.0
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 1.4e-79 301.2 285 54.0
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 1.6e-75 287.7 244 57.0
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 3.3e-73 280.0 397 39.8
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.3e-72 278.1 466 36.9
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 5.3e-71 272.7 353 45.0
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 3.5e-59 233.4 282 45.7
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 6.0e-59 232.6 424 33.7
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 1.8e-58 231.1 242 52.1
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 2.1e-56 224.2 290 44.8
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 8.1e-56 222.2 183 60.7
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 8.1e-56 222.2 373 36.7
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 2.4e-55 220.7 342 37.7
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 6.9e-55 219.2 153 63.4
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 5.8e-54 216.1 529 30.1
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.7e-53 214.5 220 50.0
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 2.2e-53 214.2 592 29.2
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 6.5e-53 212.6 183 58.5
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 9.3e-52 208.8 311 41.2
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 1.6e-51 208.0 459 32.2
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 5.1e-50 203.0 230 45.2
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 2.1e-48 197.6 479 30.7
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 4.0e-47 193.4 171 56.1
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 9.0e-47 192.2 390 31.3
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.3e-42 178.3 408 29.4
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 1.8e-42 177.9 495 28.7
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 5.1e-42 176.4 272 40.1
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 9.7e-41 172.2 486 29.8
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 3.1e-39 167.2 317 36.0
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 3.4e-38 163.7 250 40.0
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 3.8e-37 160.2 404 29.2
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 1.8e-34 151.4 191 42.9
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 8.8e-34 149.1 291 35.4
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 1.5e-33 148.3 193 43.5
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 2.0e-33 147.9 460 29.3
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 5.7e-33 146.4 252 34.9
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 1.1e-31 142.1 136 53.7
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 7.2e-28 129.4 122 50.0
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 9.4e-28 129.0 97 57.7
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 9.4e-28 129.0 92 65.2
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 3.0e-26 124.0 123 51.2
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 4.8e-24 116.7 118 51.7
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 3.5e-22 110.5 127 44.9
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 1.3e-21 108.6 126 44.4
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 1.6e-19 101.7 151 42.4
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 2.3e-18 97.8 106 39.6
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 5.2e-18 96.7 119 43.7
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 3.1e-15 87.4 306 28.1
MCO07G121 Micromonas commoda HOM05D001952 ORTHO05D004913 2.2e-13 81.3 167 28.1
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.0e-10 70.9 72 48.6
arahy.Tifrunner.gnm1.ann1.6B0T5V Arachis hypogaea HOM05D001952 ORTHO05D004913 1.1e-07 62.4 136 30.9


User provided reference genes

Program Settings