Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G1068 Erigeron canadensis HOM05D005139 ORTHO05D006125 0.0e+00 1152.9 578 100.0
HanXRQChr11g0331031 Helianthus annuus HOM05D005139 ORTHO05D006125 4.4e-269 931.0 571 83.2
HanXRQChr15g0495211 Helianthus annuus HOM05D005139 ORTHO05D006125 2.4e-267 925.2 571 83.0
Lsat_1_v5_gn_7_102480 Lactuca sativa HOM05D005139 ORTHO05D006125 9.1e-267 923.3 570 83.3
Sopen12g006100 Solanum pennellii HOM05D005139 ORTHO05D006125 5.2e-262 907.5 576 79.2
Solyc12g014320.2 Solanum lycopersicum HOM05D005139 ORTHO05D006125 2.0e-261 905.6 576 79.0
CSS0042561 Camellia sinensis var. sinensis HOM05D005139 ORTHO05D006125 3.7e-260 901.4 571 79.5
Actinidia12584 Actinidia chinensis HOM05D005139 ORTHO05D006125 6.3e-260 900.6 568 79.2
Thecc.07G118200 Theobroma cacao HOM05D005139 ORTHO05D006125 7.0e-259 897.1 577 77.8
Dinv18369 Davidia involucrata HOM05D005139 ORTHO05D006125 9.1e-259 896.7 568 77.8
CAN.G443.5 Capsicum annuum HOM05D005139 ORTHO05D006125 5.9e-258 894.0 576 76.0
Atru.chr2.2128 Acer truncatum HOM05D005139 ORTHO05D006125 7.2e-256 887.1 577 75.0
Duzib213G0634 Durio zibethinus HOM05D005139 ORTHO05D006125 8.8e-254 880.2 577 76.6
TWI38G1771 Tripterygium wilfordii HOM05D005139 ORTHO05D006125 1.2e-253 879.8 569 75.4
MD11G1264600 Malus domestica HOM05D005139 ORTHO05D006125 1.5e-253 879.4 577 77.3
Manes.15G095700 Manihot esculenta HOM05D005139 ORTHO05D006125 2.6e-253 878.6 577 74.7
Aqoxy3G02037 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 4.4e-253 877.9 569 74.9
Eucgr.F01248 Eucalyptus grandis HOM05D005139 ORTHO05D006125 7.5e-253 877.1 577 74.4
Lj8A148G34 Lonicera japonica HOM05D005139 ORTHO05D006125 1.7e-252 875.9 589 77.4
Cc05_g10990 Coffea canephora HOM05D005139 ORTHO05D006125 3.7e-252 874.8 567 76.4
MELO3C008916.2 Cucumis melo HOM05D005139 ORTHO05D006125 1.8e-251 872.5 576 73.8
GSVIVG01014182001 Vitis vinifera HOM05D005139 ORTHO05D006125 2.4e-251 872.1 569 77.9
CsaV3_4G030530 Cucumis sativus L. HOM05D005139 ORTHO05D006125 4.1e-251 871.3 576 73.6
Peaxi162Scf00000g06812 Petunia axillaris HOM05D005139 ORTHO05D006125 1.6e-250 869.4 568 78.0
Potri.001G389300 Populus trichocarpa HOM05D005139 ORTHO05D006125 2.7e-250 868.6 577 73.8
Gohir.D01G042704 Gossypium hirsutum HOM05D005139 ORTHO05D006125 4.5e-250 867.8 577 75.6
Gorai.002G053800 Gossypium raimondii HOM05D005139 ORTHO05D006125 4.5e-250 867.8 577 75.6
CiPaw.11G159600 Carya illinoinensis HOM05D005139 ORTHO05D006125 1.0e-249 866.7 577 76.4
Aqoxy4G00276 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 1.3e-249 866.3 569 76.1
Gohir.A01G053400 Gossypium hirsutum HOM05D005139 ORTHO05D006125 2.3e-249 865.5 577 75.0
COL.COLO4_17530 Corchorus olitorius HOM05D005139 ORTHO05D006125 3.8e-249 864.8 568 77.1
Ciclev10019589m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.9e-248 862.4 577 75.9
A07p43980 Brassica napus HOM05D005139 ORTHO05D006125 1.6e-247 859.4 576 72.9
BraA07t31905Z Brassica rapa HOM05D005139 ORTHO05D006125 1.6e-247 859.4 576 72.9
SalBow7G0115 Salvia bowleyana HOM05D005139 ORTHO05D006125 1.6e-247 859.4 627 69.7
SalBow7G2844 Salvia bowleyana HOM05D005139 ORTHO05D006125 2.1e-247 859.0 627 69.5
Sed0024992 Sechium edule HOM05D005139 ORTHO05D006125 2.8e-247 858.6 566 76.3
Thhalv10018370m.g Eutrema salsugineum HOM05D005139 ORTHO05D006125 4.7e-247 857.8 576 74.7
Psat4g140160 Pisum sativum HOM05D005139 ORTHO05D006125 4.7e-247 857.8 568 74.5
Ciclev10023690m.g Citrus clementina HOM05D005139 ORTHO05D006125 6.1e-247 857.4 577 73.5
BcaB03g16034 Brassica carinata HOM05D005139 ORTHO05D006125 8.0e-247 857.1 576 74.1
C06p52650 Brassica napus HOM05D005139 ORTHO05D006125 1.4e-246 856.3 576 72.7
Cfa019555 Carpinus fangiana HOM05D005139 ORTHO05D006125 1.8e-246 855.9 577 73.7
Sp5g33790 Schrenkiella parvula HOM05D005139 ORTHO05D006125 4.0e-246 854.7 576 74.7
CANSAT35G0508 Cannabis sativa HOM05D005139 ORTHO05D006125 1.2e-245 853.2 574 75.6
BcaC08g47457 Brassica carinata HOM05D005139 ORTHO05D006125 2.6e-245 852.0 576 72.6
CARHR072310 Cardamine hirsuta HOM05D005139 ORTHO05D006125 4.4e-245 851.3 566 76.0
Potri.011G108800 Populus trichocarpa HOM05D005139 ORTHO05D006125 2.2e-244 849.0 577 74.9
PSO063G5899 Papaver somniferum HOM05D005139 ORTHO05D006125 2.9e-244 848.6 566 76.0
Glyma.06G228700 Glycine max HOM05D005139 ORTHO05D006125 6.4e-244 847.4 577 74.4
Aa31LG4G2260 Aethionema arabicum HOM05D005139 ORTHO05D006125 1.1e-243 846.7 566 75.8
Lj3g0013017 Lotus japonicus HOM05D005139 ORTHO05D006125 1.4e-243 846.3 572 75.5
PSO782G2705 Papaver somniferum HOM05D005139 ORTHO05D006125 1.4e-243 846.3 566 75.6
AL2G39160 Arabidopsis lyrata HOM05D005139 ORTHO05D006125 3.2e-243 845.1 576 72.7
Migut.H02003 Erythranthe guttata HOM05D005139 ORTHO05D006125 3.2e-243 845.1 576 75.9
Carub.0002s2560 Capsella rubella HOM05D005139 ORTHO05D006125 4.1e-243 844.7 566 75.4
Phvul.011G165500 Phaseolus vulgaris HOM05D005139 ORTHO05D006125 9.2e-243 843.6 566 75.8
AT1G78770 Arabidopsis thaliana HOM05D005139 ORTHO05D006125 5.9e-242 840.9 576 74.1
Lalb_Chr03g0031181 Lupinus albus HOM05D005139 ORTHO05D006125 5.9e-242 840.9 568 75.5
ATR0127G028 Amborella trichopoda HOM05D005139 ORTHO05D006125 1.3e-241 839.7 566 74.4
ClCG04G002160 Citrullus lanatus HOM05D005139 ORTHO05D006125 1.3e-241 839.7 566 75.3
RcHm_v2.0_Chr5g0030761 Rosa chinensis HOM05D005139 ORTHO05D006125 3.3e-240 835.1 566 72.1
THA.LOC104812316 Tarenaya hassleriana HOM05D005139 ORTHO05D006125 7.3e-240 833.9 566 75.1
Sabra11G0096100 Salix brachista HOM05D005139 ORTHO05D006125 1.6e-239 832.8 615 68.9
EL10Ac4g08361 Beta vulgaris HOM05D005139 ORTHO05D006125 2.8e-239 832.0 605 71.9
Glyma.12G156300 Glycine max HOM05D005139 ORTHO05D006125 1.2e-237 826.6 569 74.2
FAN25G1917 Fragaria x ananassa HOM05D005139 ORTHO05D006125 7.5e-237 823.9 566 73.7
FvH4_3g18210 Fragaria vesca HOM05D005139 ORTHO05D006125 9.8e-237 823.5 566 73.5
Medtr8g058380 Medicago truncatula HOM05D005139 ORTHO05D006125 3.7e-236 821.6 569 72.2
FAN21G0160 Fragaria x ananassa HOM05D005139 ORTHO05D006125 7.0e-235 817.4 565 72.9
QL08p026113 Quercus lobata HOM05D005139 ORTHO05D006125 9.2e-235 817.0 637 66.1
FAN16G0871 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.0e-233 813.5 566 73.1
Sc03g0010570 Simmondsia chinensis HOM05D005139 ORTHO05D006125 1.7e-233 812.8 568 72.4
PGR083G0616 Punica granatum HOM05D005139 ORTHO05D006125 3.9e-233 811.6 590 70.0
MBI06_g15765_MAGBIO Magnolia biondii HOM05D005139 ORTHO05D006125 5.0e-233 811.2 561 74.3
FAN11G0516 Fragaria x ananassa HOM05D005139 ORTHO05D006125 8.6e-233 810.4 566 73.0
Ah.04g164210 Amaranthus hybridus HOM05D005139 ORTHO05D006125 2.3e-230 802.4 567 70.9
arahy.Tifrunner.gnm1.ann1.J0RB3X Arachis hypogaea HOM05D005139 ORTHO05D006125 2.2e-228 795.8 569 72.6
AUR62037557 Chenopodium quinoa HOM05D005139 ORTHO05D006125 1.8e-222 776.2 573 68.9
Nitab4.5_0000035g0250 Nicotiana tabacum HOM05D005139 ORTHO05D006125 2.9e-220 768.8 576 68.1
Prupe.4G161700 Prunus persica HOM05D005139 ORTHO05D006125 1.0e-217 760.4 583 69.5
arahy.Tifrunner.gnm1.ann1.405FF9 Arachis hypogaea HOM05D005139 ORTHO05D006125 1.1e-216 756.9 570 70.5
Haze_09316 Corylus avellana HOM05D005139 ORTHO05D006125 6.2e-215 751.1 566 68.9
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 2.4e-214 749.2 558 69.0
Os03g0236966 Oryza sativa ssp. japonica HOM05D005139 ORTHO05D006125 3.4e-213 745.3 563 67.0
Zm00001eb399210 Zea mays HOM05D005139 ORTHO05D006125 2.2e-212 742.7 563 64.8
SGA_v2.0_scaffold130G34288 Striga asiatica HOM05D005139 ORTHO05D006125 9.3e-211 737.3 576 66.7
Nitab4.5_0007851g0020 Nicotiana tabacum HOM05D005139 ORTHO05D006125 6.2e-207 724.5 587 64.4
Prupe.4G162300 Prunus persica HOM05D005139 ORTHO05D006125 2.2e-204 716.1 486 74.7
DCAR_013162 Daucus carota HOM05D005139 ORTHO05D006125 5.1e-193 678.3 571 65.5
Oeu005379.1 Olea europaea HOM05D005139 ORTHO05D006125 1.8e-190 669.8 786 49.6
SHI27616 Sapria himalayana HOM05D005139 ORTHO05D006125 3.4e-189 665.6 610 56.9
vmacro11947 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 1.1e-187 660.6 573 62.5
AUR62019588 Chenopodium quinoa HOM05D005139 ORTHO05D006125 3.5e-186 655.6 568 61.3
Hund10469 Selenicereus undatus HOM05D005139 ORTHO05D006125 1.5e-184 650.2 433 72.5
TAR626G0095 Trochodendron aralioides HOM05D005139 ORTHO05D006125 4.8e-183 645.2 409 77.8
VMungo1127G1423 Vigna mungo HOM05D005139 ORTHO05D006125 1.1e-182 644.0 410 77.3
Pp3c16_8790 Physcomitrium patens HOM05D005139 ORTHO05D006125 3.8e-180 635.6 567 54.3
C03p92750 Brassica napus HOM05D005139 ORTHO05D006125 1.0e-177 627.5 473 66.2
Mapoly0145s0019 Marchantia polymorpha HOM05D005139 ORTHO05D006125 2.0e-173 613.2 569 53.4
SMO244G0086 Selaginella moellendorffii HOM05D005139 ORTHO05D006125 9.7e-160 567.8 563 50.8
Ca_19229_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 4.1e-158 562.4 403 67.7
Dinv15003 Davidia involucrata HOM05D005139 ORTHO05D006125 1.0e-148 531.2 422 65.9
AagrBONN_evm.TU.Sc2ySwM_368.2003 Anthoceros agrestis HOM05D005139 ORTHO05D006125 1.5e-139 500.7 529 48.2
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 1.2e-133 481.1 523 50.3
Zm00001eb010020 Zea mays HOM05D005139 ORTHO05D006125 1.3e-132 477.6 400 59.5
SEGI_23856 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 1.6e-130 470.7 375 60.8
TPR.G5772 Trifolium pratense HOM05D005139 ORTHO05D006125 3.5e-125 453.0 269 82.9
TPR.G5739 Trifolium pratense HOM05D005139 ORTHO05D006125 8.9e-113 411.8 309 65.4
MD00G1077100 Malus domestica HOM05D005139 ORTHO05D006125 2.7e-109 400.2 325 65.8
MCO01G684 Micromonas commoda HOM05D005139 ORTHO05D006125 1.5e-107 394.4 658 35.9
Cpa.g.sc77.24 Carica papaya HOM05D005139 ORTHO05D006125 4.3e-107 392.9 418 55.3
RcHm_v2.0_Chr1g0337671 Rosa chinensis HOM05D005139 ORTHO05D006125 7.8e-93 345.5 253 66.8
RcHm_v2.0_Chr3g0469831 Rosa chinensis HOM05D005139 ORTHO05D006125 7.6e-88 328.9 305 57.0
CBR_g50377 Chara braunii HOM05D005139 ORTHO05D006125 1.5e-75 288.1 434 38.5
MD03G1275700 Malus domestica HOM05D005139 ORTHO05D006125 9.3e-70 268.9 192 70.8
Ca_28352_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 2.1e-69 267.7 152 88.8
Potri.001G389500 Populus trichocarpa HOM05D005139 ORTHO05D006125 1.6e-66 258.1 156 78.2
PRCOL_00005307 Prasinoderma coloniale HOM05D005139 ORTHO05D006125 1.2e-64 251.9 634 28.5
Cfa023795 Carpinus fangiana HOM05D005139 ORTHO05D006125 2.0e-64 251.1 579 29.2
HPP92_004205 Vanilla planifolia HOM05D005139 ORTHO05D006125 2.0e-64 251.1 164 74.4
HPP92_004206 Vanilla planifolia HOM05D005139 ORTHO05D006125 4.5e-64 250.0 152 79.6
Ciclev10023408m.g Citrus clementina HOM05D005139 ORTHO05D006125 6.5e-63 246.1 240 56.2
BolC6t40284H Brassica oleracea HOM05D005139 ORTHO05D006125 1.8e-60 238.0 139 84.2
VMungo1127G2083 Vigna mungo HOM05D005139 ORTHO05D006125 2.9e-55 220.7 170 65.9
Ciclev10023736m.g Citrus clementina HOM05D005139 ORTHO05D006125 6.1e-53 213.0 152 73.0
Ciclev10023923m.g Citrus clementina HOM05D005139 ORTHO05D006125 2.3e-52 211.1 152 72.4
Ciclev10024516m.g Citrus clementina HOM05D005139 ORTHO05D006125 6.3e-50 203.0 244 49.2
CBR_g50375 Chara braunii HOM05D005139 ORTHO05D006125 2.2e-47 194.5 163 56.4
Aqoxy256s002 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 2.9e-47 194.1 109 85.3
Cpa.g.sc77.22 Carica papaya HOM05D005139 ORTHO05D006125 3.0e-44 184.1 142 63.4
Hund10473 Selenicereus undatus HOM05D005139 ORTHO05D006125 3.9e-44 183.7 131 66.4
Haze_27412 Corylus avellana HOM05D005139 ORTHO05D006125 6.3e-42 176.4 273 36.6
Cre13.g562950 Chlamydomonas reinhardtii HOM05D005139 ORTHO05D006125 7.0e-41 172.9 887 23.3
Sabra16G0255500 Salix brachista HOM05D005139 ORTHO05D006125 1.6e-37 161.8 189 48.7
MD03G1275800 Malus domestica HOM05D005139 ORTHO05D006125 4.4e-35 153.7 85 89.4
vmacro11946 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 1.3e-34 152.1 111 75.7
Rhsim12G0175500 Rhododendron simsii HOM05D005139 ORTHO05D006125 2.9e-10 71.2 106 41.5
Rhsim02G0051300 Rhododendron simsii HOM05D005139 ORTHO05D006125 1.9e-09 68.6 63 50.8
ClCG05G009350 Citrullus lanatus HOM05D005139 ORTHO05D006125 3.5e-08 64.3 51 62.7
SEGI_13361 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 6.6e-07 60.1 76 43.4
CBR_g34498 Chara braunii HOM05D003088 ORTHO05D006665 1.5e-06 58.9 74 41.9


User provided reference genes

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