Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 1.4e-243 845.9 429 100.0
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 4.1e-179 631.7 438 76.9
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 1.7e-177 626.3 443 74.9
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 2.0e-130 469.9 285 78.9
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 2.3e-129 466.5 439 57.6
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 3.1e-126 456.1 444 56.5
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 5.2e-126 455.3 450 57.1
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 7.5e-125 451.4 450 56.9
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 6.4e-124 448.4 430 58.1
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 1.4e-123 447.2 436 56.9
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 2.4e-123 446.4 449 55.7
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 5.4e-123 445.3 445 56.4
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 7.0e-123 444.9 469 53.5
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 1.2e-122 444.1 433 58.4
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 1.2e-122 444.1 437 55.8
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 2.7e-122 443.0 471 54.4
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 2.7e-122 443.0 442 54.8
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 3.5e-122 442.6 428 56.3
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 3.5e-122 442.6 444 56.3
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 6.0e-122 441.8 432 56.5
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 7.8e-122 441.4 480 54.2
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 1.0e-121 441.0 477 53.7
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 1.3e-121 440.7 435 55.4
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 2.3e-121 439.9 430 56.0
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 3.9e-121 439.1 437 56.3
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 8.6e-121 438.0 432 56.5
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 8.6e-121 438.0 432 56.5
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 4.3e-120 435.6 440 55.7
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 1.2e-119 434.1 441 56.0
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 1.6e-119 433.7 432 55.8
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 4.7e-119 432.2 433 55.0
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 4.7e-119 432.2 442 55.2
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 8.1e-119 431.4 481 51.6
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 1.8e-118 430.3 439 56.0
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 2.3e-118 429.9 501 51.5
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 6.8e-118 428.3 438 52.3
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 6.8e-118 428.3 427 54.6
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 6.8e-118 428.3 462 49.4
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 1.2e-117 427.6 431 55.0
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 1.5e-117 427.2 434 56.0
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 3.4e-117 426.0 432 56.0
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 3.4e-117 426.0 429 56.9
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 5.8e-117 425.2 467 52.7
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 9.9e-117 424.5 443 56.4
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 9.9e-117 424.5 450 53.3
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 1.7e-116 423.7 441 56.9
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 2.2e-116 423.3 485 51.5
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 2.9e-116 422.9 441 52.6
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 3.7e-116 422.5 534 48.1
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 3.7e-116 422.5 467 53.3
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 1.1e-115 421.0 430 53.0
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 1.4e-115 420.6 439 54.9
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 1.4e-115 420.6 441 55.6
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 1.4e-115 420.6 479 50.7
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 1.4e-115 420.6 466 53.0
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 1.2e-114 417.5 434 54.4
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 3.5e-114 416.0 479 49.5
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 4.6e-114 415.6 445 55.1
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 6.0e-114 415.2 499 48.9
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 1.3e-113 414.1 432 56.0
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 3.0e-113 412.9 430 54.7
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 3.0e-113 412.9 443 56.0
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 3.9e-113 412.5 435 54.5
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 5.1e-113 412.1 433 55.9
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 5.1e-113 412.1 432 55.6
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 8.6e-113 411.4 433 53.8
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 8.6e-113 411.4 435 52.6
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 1.5e-112 410.6 435 55.2
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 2.5e-112 409.8 443 53.0
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 9.5e-112 407.9 430 53.7
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 2.1e-111 406.8 441 53.3
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 2.8e-111 406.4 435 51.5
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 6.2e-111 405.2 425 53.9
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 8.1e-111 404.8 439 52.4
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 1.4e-110 404.1 441 53.3
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 3.1e-110 402.9 536 46.1
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 7.6e-109 398.3 530 47.7
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 7.6e-109 398.3 450 49.1
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 6.4e-108 395.2 444 53.8
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 1.4e-107 394.0 430 50.5
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 5.4e-107 392.1 451 47.7
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 3.5e-106 389.4 472 48.9
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 4.6e-106 389.0 281 66.5
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 6.0e-106 388.7 497 46.7
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 7.8e-106 388.3 445 49.7
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 6.6e-105 385.2 305 62.3
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 2.1e-103 380.2 438 50.9
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 2.0e-101 373.6 297 61.3
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.6e-101 373.2 454 46.5
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 9.9e-101 371.3 318 60.4
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 1.7e-100 370.5 262 64.5
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 2.3e-97 360.1 267 62.9
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 3.3e-96 356.3 308 57.1
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 9.9e-93 344.7 264 62.5
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 2.9e-92 343.2 283 59.7
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 3.8e-92 342.8 529 43.3
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 1.6e-90 337.4 267 58.1
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 2.7e-90 336.7 264 60.6
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 6.0e-90 335.5 266 60.9
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 8.7e-89 331.6 425 47.5
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 1.9e-88 330.5 287 56.1
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 3.3e-88 329.7 330 49.1
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 7.4e-88 328.6 232 67.7
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 1.1e-86 324.7 306 53.6
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 3.1e-86 323.2 319 53.0
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 1.7e-84 317.4 267 58.8
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 3.9e-81 306.2 250 58.0
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 8.7e-81 305.1 308 50.6
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 1.1e-80 304.7 510 40.0
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 1.6e-79 300.8 291 53.3
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 1.0e-76 291.6 195 70.3
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.5e-72 277.7 266 53.0
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 3.3e-72 276.6 267 52.1
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.0e-69 267.3 276 51.1
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 2.5e-67 260.4 189 65.1
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 2.1e-66 257.3 177 66.7
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 6.1e-58 229.2 217 53.0
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 2.6e-53 213.8 274 44.5
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 5.0e-52 209.5 274 41.2
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.1e-48 198.4 274 42.0
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 2.4e-46 190.7 137 62.8
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 3.5e-45 186.8 174 54.0
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 1.6e-42 177.9 298 38.3
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 2.1e-42 177.6 253 43.5
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 2.3e-41 174.1 133 64.7
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 9.8e-40 168.7 136 59.6
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 1.3e-39 168.3 304 35.9
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 2.7e-37 160.6 237 47.3
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 3.5e-37 160.2 106 66.0
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 7.7e-37 159.1 225 47.6
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 2.9e-36 157.1 322 34.2
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 6.1e-34 149.4 240 44.6
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.2e-29 135.2 151 47.0
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 2.8e-26 124.0 122 50.0
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 1.4e-25 121.7 76 73.7
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 6.8e-25 119.4 96 56.2
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 2.6e-24 117.5 282 30.1
PRCOL_00006577 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 4.1e-22 110.2 301 29.6
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 3.3e-19 100.5 255 36.9
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 5.6e-11 73.2 54 57.4
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 2.1e-10 71.2 95 38.9
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 4.7e-10 70.1 61 57.4
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 2.3e-09 67.8 67 52.2
Atru.chr10.2244 Acer truncatum HOM05D004937 ORTHO05D006414 1.3e-07 62.0 123 41.5
FAN25G1168 Fragaria x ananassa HOM05D004937 ORTHO05D006414 2.2e-07 61.2 108 40.7
Os07g0510300 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 4.9e-07 60.1 102 33.3


User provided reference genes

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